Wall clock time and date at job start Tue Mar 31 2020 12:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46966 * 2 1 4 4 N 1.46504 * 109.46654 * 180.02562 * 3 2 1 5 5 C 1.46504 * 119.99869 * 90.00693 * 4 3 2 6 6 C 1.50696 * 109.47122 * 89.99823 * 5 4 3 7 7 O 1.21293 * 120.00474 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99981 * 180.02562 * 6 5 4 9 9 C 1.40123 * 119.99977 * 185.53224 * 8 6 5 10 10 C 1.38716 * 120.09299 * 24.79350 * 9 8 6 11 11 C 1.38195 * 119.98776 * 179.97438 * 10 9 8 12 12 C 1.38272 * 120.16392 * 0.02562 * 11 10 9 13 13 C 1.38248 * 120.18082 * 359.97438 * 12 11 10 14 14 C 1.38551 * 120.01175 * 359.97438 * 13 12 11 15 15 O 1.35971 * 120.08315 * 180.02562 * 14 13 12 16 16 C 1.42902 * 117.00036 * 0.02562 * 15 14 13 17 17 C 1.34773 * 119.99976 * 269.99940 * 4 3 2 18 18 O 1.21688 * 120.00271 * 180.02562 * 17 4 3 19 19 C 1.46374 * 120.00066 * 0.02562 * 17 4 3 20 20 H 1.08004 * 120.00312 * 0.02562 * 19 17 4 21 21 C 1.40056 * 119.99936 * 179.97438 * 19 17 4 22 22 N 1.30670 * 120.00042 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 119.99727 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47169 * 60.00365 * 23 21 19 25 25 H 1.48497 * 109.46689 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47238 * 299.99740 * 23 21 19 27 27 H 1.08999 * 109.46979 * 59.99498 * 1 2 3 28 28 H 1.08994 * 109.47278 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46611 * 299.99781 * 1 2 3 30 30 H 1.09006 * 109.46865 * 240.00809 * 2 1 3 31 31 H 1.08990 * 109.47551 * 120.00495 * 2 1 3 32 32 H 1.08997 * 109.46771 * 60.00746 * 3 2 1 33 33 H 1.08999 * 109.47682 * 300.00071 * 3 2 1 34 34 H 1.09000 * 109.46722 * 329.99447 * 5 4 3 35 35 H 1.09007 * 109.46631 * 209.99555 * 5 4 3 36 36 H 0.96999 * 119.99611 * 5.52701 * 8 6 5 37 37 H 1.08005 * 120.00710 * 0.25035 * 10 9 8 38 38 H 1.08006 * 119.91897 * 179.97438 * 11 10 9 39 39 H 1.07996 * 119.91450 * 179.97438 * 12 11 10 40 40 H 1.07999 * 119.99743 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.46718 * 299.99498 * 16 15 14 42 42 H 1.08992 * 109.47130 * 59.99670 * 16 15 14 43 43 H 1.08998 * 109.47200 * 179.97438 * 16 15 14 44 44 H 0.96997 * 119.99799 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2370 1.4427 -1.2697 6 6 4.4880 2.8636 -1.7045 7 8 4.0938 3.7855 -1.0218 8 7 5.1496 3.1102 -2.8526 9 6 5.4849 4.4258 -3.1993 10 6 5.6227 5.3914 -2.2130 11 6 5.9539 6.6881 -2.5574 12 6 6.1482 7.0267 -3.8839 13 6 6.0125 6.0698 -4.8724 14 6 5.6817 4.7673 -4.5354 15 8 5.5485 3.8248 -5.5064 16 6 5.7645 4.2472 -6.8544 17 6 4.1794 1.4422 1.1663 18 8 5.3963 1.4427 1.1658 19 6 3.4480 1.4415 2.4342 20 1 2.3680 1.4408 2.4347 21 6 4.1489 1.4408 3.6468 22 7 5.4556 1.4412 3.6463 23 14 3.2155 1.4392 5.2649 24 1 2.3623 0.2263 5.3430 25 1 4.1810 1.4392 6.3932 26 1 2.3614 2.6513 5.3450 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.6475 0.9291 -2.0292 35 1 5.1895 0.9289 -1.1398 36 1 5.3937 2.3769 -3.4387 37 1 5.4755 5.1289 -1.1758 38 1 6.0606 7.4392 -1.7886 39 1 6.4065 8.0413 -4.1485 40 1 6.1645 6.3375 -5.9076 41 1 5.0516 5.0318 -7.1080 42 1 6.7793 4.6315 -6.9565 43 1 5.6277 3.4003 -7.5269 44 1 5.9409 1.4411 4.4861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122838447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:06 Heat of formation + Delta-G solvation = -101.534317 kcal Electronic energy + Delta-G solvation = -27116.298163 eV Core-core repulsion = 23226.405100 eV Total energy + Delta-G solvation = -3889.893062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84433 -40.58103 -39.39688 -38.14205 -36.54346 -35.77962 -34.73282 -33.50563 -31.40600 -31.01037 -29.56565 -28.09217 -27.64670 -26.31180 -24.02239 -23.18408 -22.51424 -21.89083 -20.81285 -19.43454 -18.55997 -18.21605 -18.12398 -17.79293 -16.88309 -16.55852 -16.50720 -16.27207 -15.88720 -15.66200 -15.41152 -15.25255 -15.00291 -14.45172 -14.43759 -14.28221 -13.82896 -13.76077 -13.24759 -13.10906 -12.96480 -12.84361 -12.76065 -12.69661 -12.61359 -12.18842 -12.13416 -12.05306 -12.00810 -11.97173 -11.57479 -11.44882 -10.95211 -10.85180 -9.83351 -9.61259 -9.15786 -8.79620 -8.28180 -6.81439 0.23897 0.38707 1.37494 1.41354 1.52255 1.61596 1.91600 2.24116 2.30688 2.50373 2.79827 2.82343 3.58680 3.79527 3.90109 4.00133 4.13037 4.18993 4.25972 4.35883 4.40844 4.45459 4.45820 4.48983 4.55171 4.59863 4.68699 4.78593 4.80427 4.87916 5.11023 5.13679 5.23692 5.28462 5.35619 5.40583 5.47634 5.54429 5.58189 5.77884 5.80493 6.10426 6.26000 6.40962 6.49582 6.89075 7.16269 7.37935 8.47318 8.68184 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.003442 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.871110 B = 8132.580816 C = 9215.458146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C 0.131 3.869 4 N -0.625 5.625 5 C 0.111 3.889 6 C 0.491 3.509 7 O -0.550 6.550 8 N -0.656 5.656 9 C 0.102 3.898 10 C -0.127 4.127 11 C -0.144 4.144 12 C -0.096 4.096 13 C -0.183 4.183 14 C 0.094 3.906 15 O -0.333 6.333 16 C 0.019 3.981 17 C 0.548 3.452 18 O -0.629 6.629 19 C -0.561 4.561 20 H 0.089 0.911 21 C 0.028 3.972 22 N -0.821 5.821 23 Si 0.991 3.009 24 H -0.249 1.249 25 H -0.274 1.274 26 H -0.259 1.259 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.424 0.576 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 4.591 -20.745 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.008 3.992 4 N -0.359 5.359 5 C -0.017 4.017 6 C 0.279 3.721 7 O -0.427 6.427 8 N -0.303 5.303 9 C 0.007 3.993 10 C -0.148 4.148 11 C -0.163 4.163 12 C -0.114 4.114 13 C -0.202 4.202 14 C 0.046 3.954 15 O -0.247 6.247 16 C -0.075 4.075 17 C 0.355 3.645 18 O -0.517 6.517 19 C -0.598 4.598 20 H 0.107 0.893 21 C -0.187 4.187 22 N -0.451 5.451 23 Si 0.810 3.190 24 H -0.173 1.173 25 H -0.199 1.199 26 H -0.183 1.183 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.111 0.889 36 H 0.262 0.738 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.138 0.862 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.480 4.948 -20.120 21.010 hybrid contribution 0.246 -0.107 0.713 0.762 sum -3.234 4.841 -19.407 20.262 Atomic orbital electron populations 1.21647 0.93588 1.02391 1.02140 1.21862 0.97114 0.96362 1.01765 1.21395 0.79089 0.97119 1.01605 1.47605 1.06514 1.77996 1.03793 1.21091 1.00503 0.91126 0.89011 1.22299 0.76213 0.93798 0.79787 1.90631 1.50810 1.47178 1.54068 1.43357 1.56372 1.07381 1.23147 1.17404 1.04911 0.86084 0.90946 1.21227 1.00419 0.94309 0.98833 1.21201 1.01795 0.95116 0.98156 1.21285 0.98174 1.00714 0.91242 1.21437 1.05727 0.90923 1.02090 1.18693 1.00726 0.89696 0.86270 1.85987 1.86078 1.35760 1.16843 1.23375 1.02042 1.03529 0.78504 1.18543 0.86477 0.75428 0.84073 1.90536 1.16203 1.57496 1.87418 1.21419 0.94649 1.53917 0.89781 0.89324 1.26971 0.95502 0.91349 1.04865 1.70190 1.09426 1.36672 1.28778 0.85174 0.78373 0.80329 0.75103 1.17262 1.19873 1.18311 0.91540 0.91454 0.93070 0.91328 0.93673 0.92190 0.91249 0.84447 0.88899 0.73764 0.87363 0.84732 0.82151 0.81547 0.91539 0.91364 0.86232 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.13 -4.20 6.26 30.60 0.19 -4.01 16 3 C 0.13 5.05 5.12 86.38 0.44 5.49 16 4 N -0.63 -29.44 1.96 -831.24 -1.63 -31.07 16 5 C 0.11 4.29 5.89 85.63 0.50 4.80 16 6 C 0.49 20.21 7.70 87.66 0.68 20.88 16 7 O -0.55 -27.75 13.61 -3.07 -0.04 -27.79 16 8 N -0.66 -21.76 5.29 -303.13 -1.60 -23.36 16 9 C 0.10 3.40 6.45 38.19 0.25 3.65 16 10 C -0.13 -4.71 8.71 22.37 0.19 -4.51 16 11 C -0.14 -4.10 10.04 22.27 0.22 -3.88 16 12 C -0.10 -2.01 10.04 22.28 0.22 -1.79 16 13 C -0.18 -3.66 9.04 22.35 0.20 -3.46 16 14 C 0.09 2.40 6.70 22.60 0.15 2.55 16 15 O -0.33 -7.00 9.91 -93.23 -0.92 -7.93 16 16 C 0.02 0.21 9.81 113.37 1.11 1.32 16 17 C 0.55 32.96 7.61 86.36 0.66 33.61 16 18 O -0.63 -43.31 14.60 -4.31 -0.06 -43.37 16 19 C -0.56 -32.98 8.74 24.83 0.22 -32.76 16 20 H 0.09 4.73 6.00 -2.91 -0.02 4.71 16 21 C 0.03 1.62 5.50 85.31 0.47 2.09 16 22 N -0.82 -52.01 11.83 21.84 0.26 -51.75 16 23 Si 0.99 42.71 29.56 68.60 2.03 44.73 16 24 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 2.56 6.10 -2.39 -0.01 2.54 16 33 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 34 H 0.14 3.79 8.07 -2.39 -0.02 3.77 16 35 H 0.09 3.86 7.42 -2.38 -0.02 3.85 16 36 H 0.42 11.06 8.35 -92.71 -0.77 10.29 16 37 H 0.11 5.01 5.80 -2.91 -0.02 5.00 16 38 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.17 1.99 6.30 -2.91 -0.02 1.97 16 41 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 42 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 43 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.27 15.72 8.29 -92.71 -0.77 14.95 16 Total: -1.00 -89.18 370.27 4.50 -84.67 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.25 Total: 34.55 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 6.22 Total: 21.31 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -2.97 Total: -106.18 kcal Atomic # 8 Polarization: -78.05 SS G_CDS: -1.03 Total: -79.08 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -89.18 4.50 -84.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122838447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.860 kcal (2) G-P(sol) polarization free energy of solvation -89.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds