Wall clock time and date at job start Tue Mar 31 2020 12:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47120 * 2 1 4 4 N 1.46499 * 109.47283 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99589 * 274.24243 * 4 3 2 6 6 H 1.07995 * 120.00470 * 320.47614 * 5 4 3 7 7 C 1.38821 * 119.99785 * 140.47429 * 5 4 3 8 8 N 1.31616 * 120.00069 * 157.41412 * 7 5 4 9 9 Si 1.86801 * 119.99743 * 337.41425 * 7 5 4 10 10 H 1.48498 * 109.47359 * 95.30865 * 9 7 5 11 11 H 1.48506 * 109.46876 * 215.30445 * 9 7 5 12 12 H 1.48492 * 109.47352 * 335.30496 * 9 7 5 13 13 C 1.46494 * 120.00367 * 94.24555 * 4 3 2 14 14 C 1.50703 * 109.47236 * 89.99909 * 13 4 3 15 15 O 1.21288 * 119.99905 * 0.02562 * 14 13 4 16 16 N 1.34780 * 119.99902 * 180.02562 * 14 13 4 17 17 C 1.40105 * 119.99717 * 185.44427 * 16 14 13 18 18 C 1.38845 * 120.01767 * 324.57089 * 17 16 14 19 19 C 1.38124 * 120.03629 * 180.09992 * 18 17 16 20 20 C 1.38712 * 120.16219 * 359.94416 * 19 18 17 21 21 C 1.38990 * 119.93346 * 359.96179 * 20 19 18 22 22 C 1.38645 * 119.88459 * 0.11525 * 21 20 19 23 23 O 1.36112 * 120.78344 * 180.39076 * 21 20 19 24 24 C 1.43170 * 116.70499 * 342.55736 * 23 21 20 25 25 C 1.53471 * 108.23580 * 46.31602 * 24 23 21 26 26 O 1.36207 * 119.31856 * 179.79927 * 20 19 18 27 27 H 1.08994 * 109.47208 * 60.00179 * 1 2 3 28 28 H 1.09005 * 109.46636 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46741 * 299.99496 * 1 2 3 30 30 H 1.08996 * 109.46753 * 240.00108 * 2 1 3 31 31 H 1.08997 * 109.47310 * 120.00328 * 2 1 3 32 32 H 1.09003 * 109.47518 * 60.00161 * 3 2 1 33 33 H 1.08997 * 109.47296 * 300.00336 * 3 2 1 34 34 H 0.96999 * 120.00078 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47215 * 330.00344 * 13 4 3 36 36 H 1.08996 * 109.47608 * 210.00063 * 13 4 3 37 37 H 0.97003 * 120.00120 * 5.43228 * 16 14 13 38 38 H 1.08006 * 119.97702 * 0.11954 * 18 17 16 39 39 H 1.08001 * 119.91606 * 179.97438 * 19 18 17 40 40 H 1.08003 * 119.98866 * 180.17949 * 22 21 20 41 41 H 1.08998 * 109.71132 * 286.63530 * 24 23 21 42 42 H 1.09003 * 109.70980 * 166.00172 * 24 23 21 43 43 H 1.09007 * 109.70572 * 180.57265 * 25 24 23 44 44 H 1.08998 * 109.74114 * 59.97440 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3546 1.1818 6 1 3.8357 1.8867 2.0521 7 6 5.3403 0.5814 1.2617 8 7 6.2314 0.8223 2.1999 9 14 5.6233 -0.8010 0.0376 10 1 6.4669 -0.3073 -1.0804 11 1 6.3107 -1.9294 0.7155 12 1 4.3174 -1.2653 -0.4954 13 6 4.2370 1.5366 -1.2661 14 6 4.4881 2.9858 -1.5946 15 8 4.0946 3.8545 -0.8452 16 7 5.1498 3.3165 -2.7213 17 6 5.4833 4.6542 -2.9707 18 6 4.6209 5.6697 -2.5796 19 6 4.9484 6.9885 -2.8271 20 6 6.1392 7.3029 -3.4654 21 6 7.0054 6.2887 -3.8563 22 6 6.6755 4.9650 -3.6091 23 8 8.1819 6.5780 -4.4766 24 6 8.3060 7.8873 -5.0423 25 6 7.8102 8.9065 -4.0076 26 8 6.4430 8.6090 -3.7045 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 7.0352 0.2823 2.2555 35 1 3.6477 1.0806 -2.0615 36 1 5.1895 1.0146 -1.1746 37 1 5.3952 2.6284 -3.3594 38 1 3.6936 5.4281 -2.0813 39 1 4.2760 7.7768 -2.5224 40 1 7.3487 4.1757 -3.9095 41 1 7.7001 7.9564 -5.9458 42 1 9.3503 8.0863 -5.2832 43 1 7.8849 9.9135 -4.4184 44 1 8.4119 8.8338 -3.1016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122988293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:04 Heat of formation + Delta-G solvation = -50.534939 kcal Electronic energy + Delta-G solvation = -27011.195516 eV Core-core repulsion = 23123.513952 eV Total energy + Delta-G solvation = -3887.681564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26623 -39.69611 -37.45450 -37.27109 -35.95958 -34.01085 -32.89004 -31.36721 -30.97248 -30.20209 -28.42171 -26.92314 -25.75702 -24.75131 -22.82722 -22.37201 -21.42878 -20.24943 -19.75190 -18.78473 -17.75477 -17.43199 -17.02788 -16.35850 -15.83179 -15.56148 -15.24467 -14.99689 -14.57525 -14.46492 -14.28140 -14.05126 -13.84521 -13.67370 -13.52052 -13.10608 -12.86939 -12.68174 -12.48878 -12.38460 -11.93114 -11.75144 -11.35991 -11.21420 -11.20845 -10.84733 -10.76523 -10.58749 -10.57212 -10.24648 -9.88222 -9.64338 -9.58482 -9.18083 -8.56372 -8.45419 -7.57791 -6.90032 -6.03991 -3.47020 1.33050 1.41123 2.87203 3.07657 3.17716 3.25796 3.40340 3.43952 3.55951 3.87936 4.08278 4.43605 4.59775 4.63028 4.69556 4.89346 5.02373 5.18467 5.23851 5.26730 5.37145 5.41881 5.59429 5.62423 5.73802 5.77898 5.87104 5.97523 6.01839 6.10768 6.13807 6.18065 6.38285 6.46473 6.51563 6.52909 6.55274 6.85403 6.89096 7.04869 7.07364 7.41888 7.76734 8.00918 8.39521 8.74028 8.93948 9.63533 10.02166 11.11398 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.003245 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.913088 B = 8625.391424 C = 9414.100812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.155 3.845 4 N -0.577 5.577 5 C -0.262 4.262 6 H 0.080 0.920 7 C 0.037 3.963 8 N -0.892 5.892 9 Si 0.865 3.135 10 H -0.286 1.286 11 H -0.297 1.297 12 H -0.261 1.261 13 C 0.120 3.880 14 C 0.485 3.515 15 O -0.496 6.496 16 N -0.687 5.687 17 C 0.168 3.832 18 C -0.116 4.116 19 C -0.093 4.093 20 C 0.023 3.977 21 C 0.067 3.933 22 C -0.149 4.149 23 O -0.308 6.308 24 C 0.022 3.978 25 C 0.020 3.980 26 O -0.310 6.310 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.406 0.594 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.103 9.775 -16.722 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.030 3.970 4 N -0.296 5.296 5 C -0.391 4.391 6 H 0.097 0.903 7 C -0.164 4.164 8 N -0.532 5.532 9 Si 0.694 3.306 10 H -0.214 1.214 11 H -0.224 1.224 12 H -0.186 1.186 13 C -0.011 4.011 14 C 0.271 3.729 15 O -0.367 6.367 16 N -0.335 5.335 17 C 0.072 3.928 18 C -0.136 4.136 19 C -0.112 4.112 20 C -0.022 4.022 21 C 0.022 3.978 22 C -0.171 4.171 23 O -0.223 6.223 24 C -0.054 4.054 25 C -0.055 4.055 26 O -0.225 6.225 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.241 0.759 38 H 0.168 0.832 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.256 10.307 -15.963 19.003 hybrid contribution 0.941 -0.945 -1.022 1.680 sum 0.684 9.362 -16.986 19.407 Atomic orbital electron populations 1.21725 0.97078 1.00566 1.01100 1.22116 0.93889 1.00431 1.02041 1.20933 0.83077 0.93489 0.99519 1.43767 1.00787 1.83280 1.01750 1.18766 1.07394 1.24007 0.88889 0.90253 1.25533 0.96679 0.97748 0.96489 1.69895 1.08734 1.39128 1.35425 0.87092 0.78273 0.84194 0.81021 1.21419 1.22438 1.18551 1.21427 0.98942 0.89809 0.90934 1.23402 0.76033 0.94908 0.78592 1.90610 1.47810 1.50677 1.47603 1.44192 1.59449 1.06012 1.23885 1.17501 0.92282 0.85424 0.97566 1.21152 1.00908 0.90424 1.01132 1.20322 0.95439 0.96854 0.98629 1.18810 0.97366 0.82439 1.03604 1.18457 0.87498 0.92967 0.98920 1.20059 0.96364 0.93841 1.06812 1.86296 1.32794 1.32906 1.70277 1.23585 1.04056 0.81869 0.95875 1.23568 0.82407 1.00210 0.99355 1.86304 1.27133 1.22548 1.86472 0.93497 0.93661 0.92994 0.93224 0.91463 0.92881 0.94271 0.92617 0.90860 0.89800 0.75938 0.83235 0.84682 0.84675 0.90668 0.86334 0.86391 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.15 -2.56 6.24 -26.73 -0.17 -2.73 16 3 C 0.16 3.07 5.67 -4.05 -0.02 3.05 16 4 N -0.58 -13.43 1.53 -174.62 -0.27 -13.70 16 5 C -0.26 -7.29 9.89 -15.06 -0.15 -7.44 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 7 C 0.04 1.03 5.28 -17.43 -0.09 0.94 16 8 N -0.89 -27.13 13.97 55.49 0.78 -26.35 16 9 Si 0.87 20.75 25.17 -169.99 -4.28 16.47 16 10 H -0.29 -6.50 6.67 56.52 0.38 -6.12 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.26 -5.95 7.11 56.52 0.40 -5.54 16 13 C 0.12 2.44 4.97 -5.20 -0.03 2.41 16 14 C 0.48 9.75 7.75 -10.98 -0.09 9.66 16 15 O -0.50 -11.73 13.86 5.55 0.08 -11.65 16 16 N -0.69 -11.05 5.34 -9.85 -0.05 -11.10 16 17 C 0.17 2.74 6.30 -83.66 -0.53 2.21 16 18 C -0.12 -1.92 8.70 -39.40 -0.34 -2.26 16 19 C -0.09 -1.39 9.95 -39.45 -0.39 -1.78 16 20 C 0.02 0.34 6.50 -39.13 -0.25 0.08 16 21 C 0.07 0.98 6.49 -39.15 -0.25 0.73 16 22 C -0.15 -2.23 9.88 -39.24 -0.39 -2.62 16 23 O -0.31 -4.00 10.42 -32.88 -0.34 -4.34 16 24 C 0.02 0.19 7.26 37.40 0.27 0.46 16 25 C 0.02 0.18 7.26 37.40 0.27 0.45 16 26 O -0.31 -4.01 10.42 -33.19 -0.35 -4.35 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.04 0.70 8.04 -51.93 -0.42 0.28 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.08 1.83 3.55 -51.93 -0.18 1.64 16 37 H 0.41 5.03 8.83 -40.82 -0.36 4.67 16 38 H 0.15 2.66 6.21 -52.48 -0.33 2.33 16 39 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.14 1.79 8.06 -52.48 -0.42 1.36 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -34.41 362.19 -7.12 -41.53 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.36 Total: 6.55 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.79 Total: 1.48 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.46 Total: -51.15 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.61 Total: -20.35 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.28 Total: 16.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.41 -7.12 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122988293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.002 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds