Wall clock time and date at job start Tue Mar 31 2020 12:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47120 * 2 1 4 4 N 1.46499 * 109.47283 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99589 * 274.24243 * 4 3 2 6 6 H 1.07995 * 120.00470 * 320.47614 * 5 4 3 7 7 C 1.38821 * 119.99785 * 140.47429 * 5 4 3 8 8 N 1.31616 * 120.00069 * 157.41412 * 7 5 4 9 9 Si 1.86801 * 119.99743 * 337.41425 * 7 5 4 10 10 H 1.48498 * 109.47359 * 95.30865 * 9 7 5 11 11 H 1.48506 * 109.46876 * 215.30445 * 9 7 5 12 12 H 1.48492 * 109.47352 * 335.30496 * 9 7 5 13 13 C 1.46494 * 120.00367 * 94.24555 * 4 3 2 14 14 C 1.50703 * 109.47236 * 89.99909 * 13 4 3 15 15 O 1.21288 * 119.99905 * 0.02562 * 14 13 4 16 16 N 1.34780 * 119.99902 * 180.02562 * 14 13 4 17 17 C 1.40105 * 119.99717 * 185.44427 * 16 14 13 18 18 C 1.38845 * 120.01767 * 324.57089 * 17 16 14 19 19 C 1.38124 * 120.03629 * 180.09992 * 18 17 16 20 20 C 1.38712 * 120.16219 * 359.94416 * 19 18 17 21 21 C 1.38990 * 119.93346 * 359.96179 * 20 19 18 22 22 C 1.38645 * 119.88459 * 0.11525 * 21 20 19 23 23 O 1.36112 * 120.78344 * 180.39076 * 21 20 19 24 24 C 1.43170 * 116.70499 * 342.55736 * 23 21 20 25 25 C 1.53471 * 108.23580 * 46.31602 * 24 23 21 26 26 O 1.36207 * 119.31856 * 179.79927 * 20 19 18 27 27 H 1.08994 * 109.47208 * 60.00179 * 1 2 3 28 28 H 1.09005 * 109.46636 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46741 * 299.99496 * 1 2 3 30 30 H 1.08996 * 109.46753 * 240.00108 * 2 1 3 31 31 H 1.08997 * 109.47310 * 120.00328 * 2 1 3 32 32 H 1.09003 * 109.47518 * 60.00161 * 3 2 1 33 33 H 1.08997 * 109.47296 * 300.00336 * 3 2 1 34 34 H 0.96999 * 120.00078 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47215 * 330.00344 * 13 4 3 36 36 H 1.08996 * 109.47608 * 210.00063 * 13 4 3 37 37 H 0.97003 * 120.00120 * 5.43228 * 16 14 13 38 38 H 1.08006 * 119.97702 * 0.11954 * 18 17 16 39 39 H 1.08001 * 119.91606 * 179.97438 * 19 18 17 40 40 H 1.08003 * 119.98866 * 180.17949 * 22 21 20 41 41 H 1.08998 * 109.71132 * 286.63530 * 24 23 21 42 42 H 1.09003 * 109.70980 * 166.00172 * 24 23 21 43 43 H 1.09007 * 109.70572 * 180.57265 * 25 24 23 44 44 H 1.08998 * 109.74114 * 59.97440 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3546 1.1818 6 1 3.8357 1.8867 2.0521 7 6 5.3403 0.5814 1.2617 8 7 6.2314 0.8223 2.1999 9 14 5.6233 -0.8010 0.0376 10 1 6.4669 -0.3073 -1.0804 11 1 6.3107 -1.9294 0.7155 12 1 4.3174 -1.2653 -0.4954 13 6 4.2370 1.5366 -1.2661 14 6 4.4881 2.9858 -1.5946 15 8 4.0946 3.8545 -0.8452 16 7 5.1498 3.3165 -2.7213 17 6 5.4833 4.6542 -2.9707 18 6 4.6209 5.6697 -2.5796 19 6 4.9484 6.9885 -2.8271 20 6 6.1392 7.3029 -3.4654 21 6 7.0054 6.2887 -3.8563 22 6 6.6755 4.9650 -3.6091 23 8 8.1819 6.5780 -4.4766 24 6 8.3060 7.8873 -5.0423 25 6 7.8102 8.9065 -4.0076 26 8 6.4430 8.6090 -3.7045 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 7.0352 0.2823 2.2555 35 1 3.6477 1.0806 -2.0615 36 1 5.1895 1.0146 -1.1746 37 1 5.3952 2.6284 -3.3594 38 1 3.6936 5.4281 -2.0813 39 1 4.2760 7.7768 -2.5224 40 1 7.3487 4.1757 -3.9095 41 1 7.7001 7.9564 -5.9458 42 1 9.3503 8.0863 -5.2832 43 1 7.8849 9.9135 -4.4184 44 1 8.4119 8.8338 -3.1016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122988293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:03 Heat of formation + Delta-G solvation = -74.249243 kcal Electronic energy + Delta-G solvation = -27012.223845 eV Core-core repulsion = 23123.513952 eV Total energy + Delta-G solvation = -3888.709893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.28946 -41.11119 -38.78897 -38.23725 -37.58203 -35.39525 -34.58282 -33.20735 -31.95902 -31.34617 -29.68266 -28.26550 -27.53758 -25.73463 -24.13158 -23.82564 -22.70628 -21.63667 -21.20245 -19.87233 -19.21213 -18.69626 -18.26617 -17.89863 -17.26414 -16.91288 -16.47335 -16.18947 -15.89517 -15.81425 -15.48424 -15.37946 -15.11153 -14.91834 -14.85329 -14.51242 -14.35340 -14.21908 -14.04904 -13.63597 -13.31400 -12.95084 -12.79318 -12.55327 -12.46365 -12.28365 -12.15321 -12.02525 -11.98673 -11.57335 -11.51896 -11.34808 -10.99804 -10.72948 -10.57742 -9.60034 -8.83633 -8.73591 -8.19931 -5.62678 0.14043 0.24153 1.28684 1.44682 1.55357 1.67313 1.94605 2.10052 2.40872 2.43237 2.67833 3.05054 3.28923 3.33184 3.65618 3.88973 3.96959 4.05992 4.15191 4.24997 4.28019 4.34717 4.36635 4.39684 4.50592 4.53066 4.58754 4.67850 4.70881 4.77932 4.86654 4.96288 5.04400 5.19802 5.24957 5.29089 5.33992 5.44968 5.61877 5.78374 5.87103 5.92529 6.20073 6.38252 6.50219 6.93443 7.30429 7.58192 7.98065 9.00350 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.003245 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.913088 B = 8625.391424 C = 9414.100812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C 0.153 3.847 4 N -0.590 5.590 5 C -0.258 4.258 6 H 0.022 0.978 7 C -0.023 4.023 8 N -0.951 5.951 9 Si 0.940 3.060 10 H -0.259 1.259 11 H -0.308 1.308 12 H -0.236 1.236 13 C 0.115 3.885 14 C 0.485 3.515 15 O -0.543 6.543 16 N -0.668 5.668 17 C 0.148 3.852 18 C -0.131 4.131 19 C -0.101 4.101 20 C 0.024 3.976 21 C 0.064 3.936 22 C -0.148 4.148 23 O -0.320 6.320 24 C 0.015 3.985 25 C 0.012 3.988 26 O -0.321 6.321 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.264 0.736 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.425 0.575 38 H 0.131 0.869 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.085 0.915 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 9.541 -20.666 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 C 0.028 3.972 4 N -0.310 5.310 5 C -0.388 4.388 6 H 0.039 0.961 7 C -0.220 4.220 8 N -0.594 5.594 9 Si 0.765 3.235 10 H -0.186 1.186 11 H -0.237 1.237 12 H -0.159 1.159 13 C -0.014 4.014 14 C 0.272 3.728 15 O -0.418 6.418 16 N -0.317 5.317 17 C 0.052 3.948 18 C -0.151 4.151 19 C -0.120 4.120 20 C -0.022 4.022 21 C 0.018 3.982 22 C -0.169 4.169 23 O -0.235 6.235 24 C -0.059 4.059 25 C -0.063 4.063 26 O -0.236 6.236 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.264 0.736 38 H 0.149 0.851 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.104 0.896 42 H 0.173 0.827 43 H 0.175 0.825 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.163 10.087 -19.998 22.398 hybrid contribution 0.865 -0.590 0.160 1.059 sum 1.028 9.497 -19.838 22.018 Atomic orbital electron populations 1.21664 0.94119 1.02008 1.01960 1.21985 0.96451 0.98083 1.01124 1.21038 0.81332 0.95251 0.99546 1.43814 1.02040 1.83812 1.01292 1.18487 1.07660 1.23121 0.89495 0.96052 1.26256 0.96123 1.00172 0.99404 1.70062 1.09735 1.40678 1.38889 0.85900 0.79507 0.79253 0.78795 1.18570 1.23660 1.15862 1.21559 0.99057 0.90045 0.90780 1.23195 0.76049 0.94492 0.79087 1.90609 1.50027 1.51698 1.49446 1.43774 1.58144 1.06777 1.23049 1.17581 0.93181 0.85111 0.98893 1.21069 1.00727 0.91488 1.01855 1.20450 0.96163 0.96597 0.98760 1.18893 0.97015 0.83475 1.02791 1.18556 0.88029 0.92860 0.98723 1.20203 0.95930 0.94725 1.06073 1.86277 1.31663 1.35438 1.70094 1.23999 1.06604 0.79658 0.95656 1.23974 0.80276 1.02365 0.99683 1.86289 1.29728 1.21347 1.86264 0.91590 0.91908 0.93260 0.92100 0.94287 0.95223 0.91915 0.92755 0.85931 0.90711 0.73636 0.85131 0.83478 0.82931 0.89643 0.82695 0.82509 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.86 16 2 C -0.14 -4.62 6.24 30.59 0.19 -4.43 16 3 C 0.15 6.02 5.67 86.38 0.49 6.51 16 4 N -0.59 -27.58 1.53 -706.37 -1.08 -28.66 16 5 C -0.26 -15.02 9.89 84.04 0.83 -14.19 16 6 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 7 C -0.02 -1.35 5.28 84.86 0.45 -0.91 16 8 N -0.95 -60.50 13.97 21.65 0.30 -60.20 16 9 Si 0.94 42.75 25.17 68.60 1.73 44.48 16 10 H -0.26 -10.61 6.67 99.48 0.66 -9.95 16 11 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 12 H -0.24 -9.67 7.11 99.48 0.71 -8.96 16 13 C 0.12 4.49 4.97 85.64 0.43 4.91 16 14 C 0.49 19.31 7.75 87.66 0.68 19.98 16 15 O -0.54 -26.49 13.86 -3.06 -0.04 -26.53 16 16 N -0.67 -20.62 5.34 -303.46 -1.62 -22.24 16 17 C 0.15 4.73 6.30 38.09 0.24 4.97 16 18 C -0.13 -4.41 8.70 22.39 0.19 -4.22 16 19 C -0.10 -3.01 9.95 22.36 0.22 -2.79 16 20 C 0.02 0.67 6.50 22.56 0.15 0.82 16 21 C 0.06 1.79 6.49 22.55 0.15 1.94 16 22 C -0.15 -4.22 9.88 22.49 0.22 -4.00 16 23 O -0.32 -7.51 10.42 -82.60 -0.86 -8.37 16 24 C 0.02 0.21 7.26 72.14 0.52 0.73 16 25 C 0.01 0.17 7.26 72.14 0.52 0.70 16 26 O -0.32 -7.72 10.42 -83.69 -0.87 -8.59 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 1.27 8.07 -2.39 -0.02 1.25 16 33 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 34 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.12 3.53 8.07 -2.39 -0.02 3.51 16 36 H 0.08 3.07 3.55 -2.39 -0.01 3.06 16 37 H 0.43 9.43 8.83 -92.71 -0.82 8.61 16 38 H 0.13 4.88 6.21 -2.91 -0.02 4.86 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.16 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -80.44 362.19 3.71 -76.73 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.16 Total: 26.22 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.00 Total: 7.17 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -2.40 Total: -111.11 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.77 Total: -43.49 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.73 Total: 44.48 kcal Total: -80.44 3.71 -76.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122988293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.483 kcal (2) G-P(sol) polarization free energy of solvation -80.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds