Wall clock time and date at job start Tue Mar 31 2020 12:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46975 * 2 1 4 4 C 1.35956 * 116.99768 * 179.97438 * 3 2 1 5 5 C 1.38750 * 119.97999 * 359.72726 * 4 3 2 6 6 C 1.38055 * 120.01840 * 179.76390 * 5 4 3 7 7 C 1.38918 * 119.97987 * 0.52559 * 6 5 4 8 8 N 1.39867 * 120.02168 * 179.69733 * 7 6 5 9 9 C 1.34783 * 119.99715 * 33.37563 * 8 7 6 10 10 O 1.21388 * 119.99971 * 5.27910 * 9 8 7 11 11 C 1.49336 * 119.99827 * 185.26970 * 9 8 7 12 12 O 1.21358 * 120.00252 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99603 * 179.97438 * 11 9 8 14 14 C 1.46507 * 119.99777 * 180.02562 * 13 11 9 15 15 H 1.08998 * 109.46949 * 325.00064 * 14 13 11 16 16 C 1.50701 * 109.46968 * 205.00111 * 14 13 11 17 17 H 1.07994 * 120.00137 * 0.02562 * 16 14 13 18 18 C 1.37876 * 119.99613 * 180.02562 * 16 14 13 19 19 N 1.31517 * 120.00056 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99839 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47628 * 119.99883 * 20 18 16 23 23 H 1.48497 * 109.47007 * 239.99870 * 20 18 16 24 24 C 1.52998 * 109.46991 * 85.00195 * 14 13 11 25 25 C 1.53005 * 109.47187 * 295.00149 * 24 14 13 26 26 C 1.38917 * 119.95699 * 359.73210 * 7 6 5 27 27 C 1.38057 * 119.98431 * 359.97438 * 26 7 6 28 28 H 1.09003 * 109.47355 * 59.99409 * 1 2 3 29 29 H 1.08998 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46841 * 300.00028 * 1 2 3 31 31 H 1.09000 * 109.47173 * 240.00181 * 2 1 3 32 32 H 1.08993 * 109.47180 * 119.99801 * 2 1 3 33 33 H 1.08001 * 119.98858 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.00998 * 180.23712 * 6 5 4 35 35 H 0.97003 * 120.00234 * 213.37414 * 8 7 6 36 36 H 0.96993 * 120.00435 * 0.02562 * 13 11 9 37 37 H 0.97006 * 119.99514 * 179.97438 * 19 18 16 38 38 H 1.09003 * 109.47154 * 54.99995 * 24 14 13 39 39 H 1.09001 * 109.47284 * 175.00243 * 24 14 13 40 40 H 1.09003 * 109.46948 * 299.99973 * 25 24 14 41 41 H 1.08997 * 109.47374 * 59.99672 * 25 24 14 42 42 H 1.08999 * 109.46920 * 180.02562 * 25 24 14 43 43 H 1.08012 * 120.00918 * 179.97438 * 26 7 6 44 44 H 1.07996 * 119.99126 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1990 0.4248 0.0068 6 6 5.5677 0.6047 0.0024 7 6 6.0992 1.8883 0.0028 8 7 7.4858 2.0715 0.0048 9 6 8.2825 1.1933 -0.6360 10 8 7.7933 0.2984 -1.2942 11 6 9.7670 1.3213 -0.5361 12 8 10.2560 2.2158 0.1222 13 7 10.5636 0.4428 -1.1764 14 6 12.0200 0.5680 -1.0781 15 1 12.2919 1.6227 -1.0347 16 6 12.6614 -0.0669 -2.2850 17 1 12.0458 -0.5181 -3.0490 18 6 14.0341 -0.0716 -2.4137 19 7 14.7837 0.4783 -1.4834 20 14 14.8292 -0.8579 -3.9100 21 1 13.7743 -1.4015 -4.8028 22 1 15.6215 0.1619 -4.6430 23 1 15.7238 -1.9599 -3.4735 24 6 12.5081 -0.1371 0.1890 25 6 11.9557 0.5852 1.4195 26 6 5.2525 2.9896 0.0020 27 6 3.8840 2.8078 0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7856 -0.5729 0.0116 34 1 6.2252 -0.2521 0.0034 35 1 7.8740 2.8307 0.4672 36 1 10.1728 -0.2724 -1.7023 37 1 15.7496 0.4746 -1.5739 38 1 12.1598 -1.1699 0.1872 39 1 13.5976 -0.1210 0.2170 40 1 12.3039 1.6181 1.4214 41 1 10.8662 0.5693 1.3916 42 1 12.3038 0.0831 2.3222 43 1 5.6648 3.9879 0.0027 44 1 3.2257 3.6639 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128050663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:31 Heat of formation + Delta-G solvation = -85.501631 kcal Electronic energy + Delta-G solvation = -26191.668336 eV Core-core repulsion = 22302.470503 eV Total energy + Delta-G solvation = -3889.197833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.90582 -39.99049 -38.59911 -37.37775 -35.44627 -34.43818 -32.43639 -32.06518 -31.14160 -31.00491 -28.86356 -27.26426 -24.81728 -24.32604 -23.14870 -22.41415 -21.61407 -20.25448 -19.50037 -18.65652 -18.45763 -17.36648 -16.53485 -16.38625 -16.06721 -15.69694 -15.43216 -15.04258 -14.70229 -14.28970 -14.12534 -13.89568 -13.65389 -13.49934 -13.38605 -13.00164 -12.77477 -12.66016 -12.43649 -12.09999 -12.02798 -11.62826 -11.40291 -11.31809 -11.23889 -11.02523 -10.93403 -10.87196 -10.37004 -10.28975 -10.02942 -9.72385 -9.23308 -9.15215 -9.03884 -8.59011 -8.06501 -7.85907 -6.19549 -4.29128 1.04772 1.17774 1.90586 2.67560 2.95460 3.21374 3.29740 3.33409 3.51550 3.76442 4.07942 4.31859 4.54454 4.56613 4.66700 4.77205 4.88290 5.01763 5.07734 5.12946 5.14777 5.28039 5.38000 5.41129 5.63352 5.72453 5.82989 6.14352 6.19338 6.25873 6.29224 6.34161 6.53040 6.63063 6.92221 6.99422 7.11970 7.18331 7.20071 7.25117 7.47993 7.61704 7.75969 7.91156 8.06042 8.42034 8.60078 8.84042 9.37787 10.85848 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.002322 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.318269 B =12057.132158 C =12554.739743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.318 6.318 4 C 0.112 3.888 5 C -0.187 4.187 6 C -0.080 4.080 7 C 0.113 3.887 8 N -0.649 5.649 9 C 0.506 3.494 10 O -0.508 6.508 11 C 0.494 3.506 12 O -0.529 6.529 13 N -0.667 5.667 14 C 0.267 3.733 15 H 0.055 0.945 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.067 3.933 19 N -0.881 5.881 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.129 4.129 25 C -0.139 4.139 26 C -0.103 4.103 27 C -0.132 4.132 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.422 0.578 36 H 0.402 0.598 37 H 0.265 0.735 38 H 0.035 0.965 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.026 0.974 43 H 0.136 0.864 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.903 0.973 4.821 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.232 6.232 4 C 0.066 3.934 5 C -0.207 4.207 6 C -0.100 4.100 7 C 0.019 3.981 8 N -0.297 5.297 9 C 0.289 3.711 10 O -0.382 6.382 11 C 0.273 3.727 12 O -0.408 6.408 13 N -0.316 5.316 14 C 0.166 3.834 15 H 0.073 0.927 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.168 4.168 25 C -0.196 4.196 26 C -0.123 4.123 27 C -0.151 4.151 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.260 0.740 36 H 0.236 0.764 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.153 0.847 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.740 1.105 4.848 23.277 hybrid contribution 0.580 -0.653 -0.793 1.179 sum -22.160 0.452 4.056 22.533 Atomic orbital electron populations 1.21773 0.92787 1.02847 1.03469 1.22781 0.95802 0.82078 1.01541 1.86056 1.19015 1.29202 1.88940 1.18965 0.82245 0.94092 0.98096 1.21115 0.93561 0.98207 1.07785 1.20995 0.94693 0.96588 0.97730 1.17676 0.82570 0.93979 1.03846 1.43211 1.04155 1.29420 1.52878 1.21008 0.89325 0.81935 0.78841 1.90734 1.76475 1.32784 1.38197 1.19587 0.86058 0.84499 0.82562 1.90744 1.75404 1.33841 1.40804 1.46465 1.09548 1.28892 1.46702 1.19030 0.71659 0.98386 0.94285 0.92716 1.21242 0.91944 1.38954 1.05306 0.91709 1.24879 0.96966 0.95020 0.96742 1.69895 1.05379 1.43463 1.33142 0.86351 0.79307 0.78975 0.82265 1.19630 1.20823 1.20808 1.21967 1.04382 0.97077 0.93368 1.21857 0.99506 1.00613 0.97646 1.20745 0.92160 0.98014 1.01415 1.20166 0.94300 0.94921 1.05757 0.91533 0.90390 0.91556 0.91945 0.92006 0.85180 0.84327 0.73961 0.76397 0.92488 0.94665 0.87820 0.92923 0.94625 0.95464 0.84666 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.43 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.27 10.14 -19.60 -0.20 -3.47 16 4 C 0.11 1.24 6.69 -39.20 -0.26 0.98 16 5 C -0.19 -2.11 9.03 -39.46 -0.36 -2.47 16 6 C -0.08 -1.05 8.65 -39.40 -0.34 -1.39 16 7 C 0.11 1.46 6.28 -83.69 -0.53 0.94 16 8 N -0.65 -8.92 5.33 -10.27 -0.05 -8.97 16 9 C 0.51 8.49 7.62 -11.64 -0.09 8.40 16 10 O -0.51 -9.18 14.16 5.46 0.08 -9.10 16 11 C 0.49 9.58 6.45 -11.64 -0.08 9.51 16 12 O -0.53 -11.08 13.62 5.49 0.07 -11.00 16 13 N -0.67 -13.93 5.01 -55.40 -0.28 -14.21 16 14 C 0.27 6.52 2.24 -69.08 -0.15 6.36 16 15 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 16 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 18 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 19 N -0.88 -23.97 11.29 55.43 0.63 -23.34 16 20 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 25 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 26 C -0.10 -1.10 9.96 -39.40 -0.39 -1.49 16 27 C -0.13 -1.37 9.98 -39.46 -0.39 -1.77 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 32 H 0.06 0.40 7.64 -51.93 -0.40 0.00 16 33 H 0.13 1.19 6.29 -52.49 -0.33 0.86 16 34 H 0.14 1.97 6.41 -52.49 -0.34 1.63 16 35 H 0.42 5.10 8.30 -40.82 -0.34 4.76 16 36 H 0.40 7.90 8.01 -40.82 -0.33 7.57 16 37 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 40 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 41 H 0.03 0.73 5.64 -51.93 -0.29 0.43 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 44 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -29.47 365.25 -7.53 -37.00 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.03 Total: 11.36 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.23 Total: 0.90 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.29 Total: -46.52 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.47 -7.53 -37.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128050663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.499 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds