Wall clock time and date at job start Tue Mar 31 2020 12:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46975 * 2 1 4 4 C 1.35956 * 116.99768 * 179.97438 * 3 2 1 5 5 C 1.38750 * 119.97999 * 359.72726 * 4 3 2 6 6 C 1.38055 * 120.01840 * 179.76390 * 5 4 3 7 7 C 1.38918 * 119.97987 * 0.52559 * 6 5 4 8 8 N 1.39867 * 120.02168 * 179.69733 * 7 6 5 9 9 C 1.34783 * 119.99715 * 33.37563 * 8 7 6 10 10 O 1.21388 * 119.99971 * 5.27910 * 9 8 7 11 11 C 1.49336 * 119.99827 * 185.26970 * 9 8 7 12 12 O 1.21358 * 120.00252 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99603 * 179.97438 * 11 9 8 14 14 C 1.46507 * 119.99777 * 180.02562 * 13 11 9 15 15 H 1.08998 * 109.46949 * 325.00064 * 14 13 11 16 16 C 1.50701 * 109.46968 * 205.00111 * 14 13 11 17 17 H 1.07994 * 120.00137 * 0.02562 * 16 14 13 18 18 C 1.37876 * 119.99613 * 180.02562 * 16 14 13 19 19 N 1.31517 * 120.00056 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99839 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47628 * 119.99883 * 20 18 16 23 23 H 1.48497 * 109.47007 * 239.99870 * 20 18 16 24 24 C 1.52998 * 109.46991 * 85.00195 * 14 13 11 25 25 C 1.53005 * 109.47187 * 295.00149 * 24 14 13 26 26 C 1.38917 * 119.95699 * 359.73210 * 7 6 5 27 27 C 1.38057 * 119.98431 * 359.97438 * 26 7 6 28 28 H 1.09003 * 109.47355 * 59.99409 * 1 2 3 29 29 H 1.08998 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46841 * 300.00028 * 1 2 3 31 31 H 1.09000 * 109.47173 * 240.00181 * 2 1 3 32 32 H 1.08993 * 109.47180 * 119.99801 * 2 1 3 33 33 H 1.08001 * 119.98858 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.00998 * 180.23712 * 6 5 4 35 35 H 0.97003 * 120.00234 * 213.37414 * 8 7 6 36 36 H 0.96993 * 120.00435 * 0.02562 * 13 11 9 37 37 H 0.97006 * 119.99514 * 179.97438 * 19 18 16 38 38 H 1.09003 * 109.47154 * 54.99995 * 24 14 13 39 39 H 1.09001 * 109.47284 * 175.00243 * 24 14 13 40 40 H 1.09003 * 109.46948 * 299.99973 * 25 24 14 41 41 H 1.08997 * 109.47374 * 59.99672 * 25 24 14 42 42 H 1.08999 * 109.46920 * 180.02562 * 25 24 14 43 43 H 1.08012 * 120.00918 * 179.97438 * 26 7 6 44 44 H 1.07996 * 119.99126 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1990 0.4248 0.0068 6 6 5.5677 0.6047 0.0024 7 6 6.0992 1.8883 0.0028 8 7 7.4858 2.0715 0.0048 9 6 8.2825 1.1933 -0.6360 10 8 7.7933 0.2984 -1.2942 11 6 9.7670 1.3213 -0.5361 12 8 10.2560 2.2158 0.1222 13 7 10.5636 0.4428 -1.1764 14 6 12.0200 0.5680 -1.0781 15 1 12.2919 1.6227 -1.0347 16 6 12.6614 -0.0669 -2.2850 17 1 12.0458 -0.5181 -3.0490 18 6 14.0341 -0.0716 -2.4137 19 7 14.7837 0.4783 -1.4834 20 14 14.8292 -0.8579 -3.9100 21 1 13.7743 -1.4015 -4.8028 22 1 15.6215 0.1619 -4.6430 23 1 15.7238 -1.9599 -3.4735 24 6 12.5081 -0.1371 0.1890 25 6 11.9557 0.5852 1.4195 26 6 5.2525 2.9896 0.0020 27 6 3.8840 2.8078 0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7856 -0.5729 0.0116 34 1 6.2252 -0.2521 0.0034 35 1 7.8740 2.8307 0.4672 36 1 10.1728 -0.2724 -1.7023 37 1 15.7496 0.4746 -1.5739 38 1 12.1598 -1.1699 0.1872 39 1 13.5976 -0.1210 0.2170 40 1 12.3039 1.6181 1.4214 41 1 10.8662 0.5693 1.3916 42 1 12.3038 0.0831 2.3222 43 1 5.6648 3.9879 0.0027 44 1 3.2257 3.6639 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128050663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:28 Heat of formation + Delta-G solvation = -104.501545 kcal Electronic energy + Delta-G solvation = -26192.492234 eV Core-core repulsion = 22302.470503 eV Total energy + Delta-G solvation = -3890.021731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -42.12128 -41.02389 -39.95924 -38.42279 -37.18398 -35.62776 -34.30501 -32.83175 -32.68901 -31.95005 -29.87052 -29.09835 -26.24974 -25.05878 -24.82734 -23.47943 -22.51892 -21.77923 -21.18583 -20.05213 -19.28945 -18.56883 -18.17167 -17.46474 -17.13579 -17.04129 -16.98277 -16.48675 -15.94863 -15.61740 -15.42069 -15.02589 -14.74286 -14.62990 -14.39550 -14.32375 -13.85871 -13.77257 -13.51068 -13.28648 -13.21527 -13.19185 -12.95366 -12.74701 -12.69376 -12.58724 -12.15649 -12.11327 -11.99063 -11.71857 -11.60603 -11.10110 -11.02736 -10.63530 -10.53350 -10.04962 -9.84594 -8.80406 -8.19305 -6.36066 -0.02399 0.29880 0.64062 1.34531 1.43606 1.46593 1.57569 2.16093 2.25574 2.39268 2.73817 2.77672 3.10620 3.50475 3.79681 3.86280 4.07348 4.13243 4.21360 4.37859 4.38658 4.45830 4.48203 4.54652 4.66551 4.71040 4.92476 4.96413 5.01557 5.02096 5.18572 5.21245 5.24013 5.30196 5.34020 5.36079 5.39006 5.55835 5.65640 5.72510 5.79575 6.03734 6.11066 6.41024 6.57476 6.66916 6.80878 7.10481 7.35905 8.86016 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.002322 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.318269 B =12057.132158 C =12554.739743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.111 3.889 5 C -0.191 4.191 6 C -0.095 4.095 7 C 0.087 3.913 8 N -0.631 5.631 9 C 0.514 3.486 10 O -0.524 6.524 11 C 0.496 3.504 12 O -0.546 6.546 13 N -0.671 5.671 14 C 0.276 3.724 15 H 0.016 0.984 16 C -0.552 4.552 17 H 0.067 0.933 18 C 0.021 3.979 19 N -0.909 5.909 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.277 1.277 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.092 4.092 27 C -0.134 4.134 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.123 0.877 35 H 0.430 0.570 36 H 0.408 0.592 37 H 0.267 0.733 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.040 0.960 42 H 0.049 0.951 43 H 0.161 0.839 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.907 0.828 4.694 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.241 6.241 4 C 0.065 3.935 5 C -0.210 4.210 6 C -0.115 4.115 7 C -0.006 4.006 8 N -0.279 5.279 9 C 0.296 3.704 10 O -0.399 6.399 11 C 0.276 3.724 12 O -0.425 6.425 13 N -0.321 5.321 14 C 0.173 3.827 15 H 0.034 0.966 16 C -0.590 4.590 17 H 0.086 0.914 18 C -0.180 4.180 19 N -0.547 5.547 20 Si 0.794 3.206 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.203 1.203 24 C -0.162 4.162 25 C -0.184 4.184 26 C -0.112 4.112 27 C -0.153 4.153 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.270 0.730 36 H 0.243 0.757 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.178 0.822 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -24.797 0.975 4.741 25.265 hybrid contribution 1.048 -0.563 -0.706 1.383 sum -23.749 0.412 4.035 24.093 Atomic orbital electron populations 1.21799 0.91313 1.04115 1.03315 1.23065 0.97022 0.80915 1.02170 1.86064 1.18364 1.31040 1.88627 1.19172 0.82756 0.94361 0.97208 1.21252 0.92851 0.99351 1.07539 1.20985 0.95389 0.96328 0.98822 1.17874 0.81900 0.94811 1.06053 1.43030 1.04571 1.28598 1.51669 1.20317 0.87958 0.82597 0.79517 1.90734 1.76213 1.33666 1.39304 1.19993 0.87370 0.83538 0.81520 1.90730 1.76234 1.34269 1.41256 1.46238 1.08443 1.29778 1.47592 1.18650 0.73623 0.95906 0.94488 0.96646 1.21543 0.92476 1.39060 1.05960 0.91436 1.25685 0.97516 0.95446 0.99361 1.70019 1.05626 1.44341 1.34722 0.85342 0.78321 0.78026 0.78933 1.18981 1.20743 1.20298 1.21823 1.02834 0.97495 0.94089 1.21710 0.99611 0.99510 0.97536 1.20994 0.92036 0.98440 0.99746 1.20493 0.94468 0.95519 1.04824 0.91789 0.88433 0.91585 0.91533 0.91159 0.83574 0.85920 0.73045 0.75673 0.92371 0.94178 0.90272 0.94513 0.94123 0.93234 0.82170 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 71.98 0.74 -0.55 16 2 C 0.04 0.54 5.46 71.98 0.39 0.94 16 3 O -0.33 -6.06 10.14 -93.06 -0.94 -7.00 16 4 C 0.11 2.25 6.69 22.51 0.15 2.40 16 5 C -0.19 -4.06 9.03 22.35 0.20 -3.86 16 6 C -0.10 -2.44 8.65 22.39 0.19 -2.25 16 7 C 0.09 2.14 6.28 38.18 0.24 2.38 16 8 N -0.63 -16.84 5.33 -304.74 -1.62 -18.46 16 9 C 0.51 17.14 7.62 87.23 0.66 17.80 16 10 O -0.52 -18.90 14.16 -3.37 -0.05 -18.94 16 11 C 0.50 19.38 6.45 87.23 0.56 19.94 16 12 O -0.55 -23.08 13.62 -3.27 -0.04 -23.13 16 13 N -0.67 -28.46 5.01 -447.54 -2.24 -30.70 16 14 C 0.28 13.78 2.24 44.24 0.10 13.88 16 15 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 16 C -0.55 -29.02 8.73 25.60 0.22 -28.80 16 17 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 18 C 0.02 1.10 5.29 84.65 0.45 1.54 16 19 N -0.91 -50.35 11.29 21.45 0.24 -50.10 16 20 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 C -0.12 -5.89 5.45 30.60 0.17 -5.72 16 25 C -0.13 -5.36 8.51 71.98 0.61 -4.74 16 26 C -0.09 -1.76 9.96 22.39 0.22 -1.54 16 27 C -0.13 -2.45 9.98 22.35 0.22 -2.23 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.79 7.67 -2.39 -0.02 0.77 16 32 H 0.07 0.77 7.64 -2.39 -0.02 0.75 16 33 H 0.15 2.49 6.29 -2.91 -0.02 2.47 16 34 H 0.12 3.51 6.41 -2.91 -0.02 3.49 16 35 H 0.43 9.95 8.30 -92.71 -0.77 9.18 16 36 H 0.41 16.22 8.01 -92.71 -0.74 15.48 16 37 H 0.27 13.96 8.31 -92.70 -0.77 13.19 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 4.20 5.95 -2.39 -0.01 4.18 16 40 H 0.04 1.64 7.85 -2.39 -0.02 1.62 16 41 H 0.04 1.65 5.64 -2.39 -0.01 1.64 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.16 2.17 8.06 -2.90 -0.02 2.15 16 44 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -63.52 365.25 2.04 -61.48 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.47 Total: 33.82 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.14 Total: 9.21 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -3.63 Total: -99.27 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -1.04 Total: -49.07 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -63.52 2.04 -61.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128050663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.024 kcal (2) G-P(sol) polarization free energy of solvation -63.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.81 seconds