Wall clock time and date at job start Tue Mar 31 2020 12:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46753 * 2 1 4 4 H 1.09002 * 109.47006 * 305.00105 * 3 2 1 5 5 C 1.50697 * 109.46973 * 185.00232 * 3 2 1 6 6 H 1.08001 * 120.00230 * 240.00312 * 5 3 2 7 7 C 1.37876 * 120.00058 * 60.00191 * 5 3 2 8 8 N 1.31513 * 120.00378 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00029 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47166 * 269.99959 * 9 7 5 11 11 H 1.48503 * 109.46762 * 30.00141 * 9 7 5 12 12 H 1.48497 * 109.47037 * 150.00070 * 9 7 5 13 13 N 1.46497 * 109.46990 * 65.00351 * 3 2 1 14 14 C 1.34782 * 119.99880 * 274.99802 * 13 3 2 15 15 O 1.21359 * 120.00063 * 359.97438 * 14 13 3 16 16 C 1.49336 * 119.99533 * 179.97438 * 14 13 3 17 17 O 1.21387 * 120.00706 * 0.02562 * 16 14 13 18 18 N 1.34782 * 119.99533 * 179.97438 * 16 14 13 19 19 C 1.39880 * 119.99618 * 175.53483 * 18 16 14 20 20 C 1.38796 * 120.09895 * 34.66305 * 19 18 16 21 21 C 1.38164 * 119.97861 * 179.77074 * 20 19 18 22 22 C 1.38306 * 120.17048 * 0.50611 * 21 20 19 23 23 C 1.50701 * 119.90170 * 179.77277 * 22 21 20 24 24 C 1.38237 * 120.19960 * 359.74304 * 22 21 20 25 25 C 1.38554 * 120.01630 * 0.02562 * 24 22 21 26 26 O 1.35957 * 120.08733 * 179.97438 * 25 24 22 27 27 C 1.42899 * 117.00070 * 0.02766 * 26 25 24 28 28 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47168 * 299.99394 * 1 2 3 30 30 H 1.08997 * 109.47471 * 59.99998 * 1 2 3 31 31 H 1.09004 * 109.46743 * 240.00597 * 2 1 3 32 32 H 1.08992 * 109.47260 * 120.00404 * 2 1 3 33 33 H 0.96997 * 120.00501 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00100 * 94.99505 * 13 3 2 35 35 H 0.96999 * 120.00092 * 355.53027 * 18 16 14 36 36 H 1.08003 * 120.00850 * 359.97438 * 20 19 18 37 37 H 1.07992 * 119.91589 * 180.22763 * 21 20 19 38 38 H 1.08999 * 109.46725 * 269.97596 * 23 22 21 39 39 H 1.09001 * 109.47595 * 29.97069 * 23 22 21 40 40 H 1.08998 * 109.47639 * 149.97386 * 23 22 21 41 41 H 1.07999 * 119.99369 * 180.02562 * 24 22 21 42 42 H 1.08998 * 109.46974 * 299.99438 * 27 26 25 43 43 H 1.09003 * 109.47448 * 59.99267 * 27 26 25 44 44 H 1.08999 * 109.47187 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1431 0.8786 -1.2281 8 7 5.4538 0.8797 -1.3360 9 14 3.0962 0.1090 -2.5702 10 1 2.8755 -1.3271 -2.2635 11 1 1.7875 0.8075 -2.6387 12 1 3.7934 0.2350 -3.8752 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3399 2.6326 0.4336 16 6 0.0398 3.3314 2.6433 17 8 0.8150 3.3635 3.5769 18 7 -1.1774 3.8987 2.7584 19 6 -1.5834 4.4409 3.9822 20 6 -0.6567 5.0553 4.8130 21 6 -1.0613 5.5942 6.0191 22 6 -2.3865 5.5142 6.4066 23 6 -2.8202 6.0995 7.7258 24 6 -3.3146 4.8993 5.5871 25 6 -2.9186 4.3604 4.3737 26 8 -3.8301 3.7549 3.5668 27 6 -5.1803 3.7104 4.0324 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 5.8769 0.4820 -2.1130 34 1 2.2719 2.1231 1.9978 35 1 -1.7717 3.9310 1.9925 36 1 0.3798 5.1149 4.5152 37 1 -0.3400 6.0752 6.6631 38 1 -2.7361 5.3417 8.5047 39 1 -2.1826 6.9480 7.9741 40 1 -3.8556 6.4323 7.6529 41 1 -4.3487 4.8391 5.8927 42 1 -5.2210 3.1693 4.9778 43 1 -5.5478 4.7261 4.1791 44 1 -5.8022 3.2022 3.2955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128090614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:57 Heat of formation + Delta-G solvation = -75.816597 kcal Electronic energy + Delta-G solvation = -26902.499759 eV Core-core repulsion = 23013.721901 eV Total energy + Delta-G solvation = -3888.777858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -41.08151 -39.95859 -38.48712 -37.61913 -35.73646 -35.02025 -32.42524 -31.68932 -31.55312 -30.35031 -28.13348 -27.78368 -26.68094 -24.34622 -22.84201 -22.54454 -21.65203 -20.47858 -19.71312 -18.87042 -17.88550 -17.21359 -16.80132 -16.33312 -16.02098 -15.82842 -15.53061 -15.33090 -14.63124 -14.38570 -14.22191 -14.11928 -13.90962 -13.75910 -13.47331 -13.04354 -12.69862 -12.53300 -12.38643 -12.28886 -11.99715 -11.85817 -11.78794 -11.58979 -11.23155 -11.17896 -11.13194 -10.87561 -10.67941 -10.31518 -9.98036 -9.58980 -9.30355 -9.13421 -8.81116 -8.77167 -8.25972 -7.94318 -6.23695 -4.27446 0.96273 1.22011 1.82158 2.61610 2.98160 3.20976 3.33193 3.36519 3.45110 3.68327 4.02324 4.28010 4.49008 4.64246 4.77978 4.85763 4.86417 4.94947 5.06514 5.08691 5.19829 5.29422 5.33281 5.38686 5.55315 5.69770 5.89125 5.91630 5.96424 6.04536 6.09022 6.30816 6.39566 6.56237 6.61918 6.62380 6.72402 6.84057 6.98569 7.11822 7.17746 7.23038 7.39663 7.79543 8.07569 8.39568 8.55543 8.77421 9.34901 10.88172 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.002926 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.809259 B = 9566.755197 C =10467.304985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.259 1.259 12 H -0.293 1.293 13 N -0.661 5.661 14 C 0.498 3.502 15 O -0.529 6.529 16 C 0.508 3.492 17 O -0.507 6.507 18 N -0.640 5.640 19 C 0.112 3.888 20 C -0.080 4.080 21 C -0.138 4.138 22 C -0.064 4.064 23 C -0.113 4.113 24 C -0.194 4.194 25 C 0.109 3.891 26 O -0.315 6.315 27 C 0.030 3.970 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.268 0.732 34 H 0.408 0.592 35 H 0.425 0.575 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.131 0.869 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.021 8.294 14.711 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.072 0.928 5 C -0.576 4.576 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.184 1.184 12 H -0.221 1.221 13 N -0.310 5.310 14 C 0.277 3.723 15 O -0.408 6.408 16 C 0.290 3.710 17 O -0.381 6.381 18 N -0.287 5.287 19 C 0.018 3.982 20 C -0.100 4.100 21 C -0.156 4.156 22 C -0.065 4.065 23 C -0.169 4.169 24 C -0.213 4.213 25 C 0.062 3.938 26 O -0.228 6.228 27 C -0.065 4.065 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.244 0.756 35 H 0.263 0.737 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.765 8.084 14.336 25.720 hybrid contribution -0.622 -0.502 -0.564 0.979 sum -20.387 7.582 13.772 25.744 Atomic orbital electron populations 1.21891 0.96874 0.99403 1.02108 1.22316 0.94410 0.99603 1.01579 1.19352 0.96177 0.88702 0.81961 0.92763 1.21011 0.88230 1.40243 1.08139 0.89864 1.24818 0.94894 0.95051 0.97606 1.69858 1.08677 1.44190 1.29783 0.86914 0.80952 0.80021 0.80940 1.20129 1.18394 1.22051 1.46086 1.13643 1.52668 1.18622 1.19622 0.84211 0.81298 0.87209 1.90742 1.51181 1.59376 1.39454 1.20808 0.81886 0.78841 0.89416 1.90725 1.50321 1.56999 1.40047 1.42988 1.17692 1.56031 1.12006 1.17091 0.90303 1.01684 0.89149 1.21246 1.00226 0.94625 0.93875 1.20876 0.95316 1.02494 0.96962 1.19710 0.93198 0.97426 0.96192 1.20780 1.01638 1.00695 0.93809 1.20875 1.00469 1.05315 0.94620 1.18779 0.88495 0.96003 0.90538 1.86079 1.18230 1.73763 1.44725 1.23057 0.80406 1.01832 1.01253 0.94617 0.93226 0.92659 0.92355 0.91927 0.92163 0.75636 0.73714 0.83278 0.85387 0.91041 0.91272 0.91695 0.85134 0.92640 0.92649 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.51 37.16 0.32 -2.53 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.21 16 3 C 0.24 5.64 1.83 -69.08 -0.13 5.51 16 4 H 0.05 1.37 6.64 -51.93 -0.34 1.02 16 5 C -0.54 -14.47 9.31 -34.44 -0.32 -14.79 16 6 H 0.08 2.38 7.98 -52.49 -0.42 1.96 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 9 Si 0.88 21.31 24.41 -169.99 -4.15 17.16 16 10 H -0.27 -6.43 6.83 56.52 0.39 -6.04 16 11 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.66 -13.53 5.01 -55.40 -0.28 -13.81 16 14 C 0.50 9.50 6.45 -11.64 -0.08 9.42 16 15 O -0.53 -10.79 13.62 5.49 0.07 -10.71 16 16 C 0.51 8.60 7.73 -11.64 -0.09 8.51 16 17 O -0.51 -9.11 13.89 5.46 0.08 -9.03 16 18 N -0.64 -9.39 5.17 -10.18 -0.05 -9.45 16 19 C 0.11 1.54 6.32 -83.56 -0.53 1.01 16 20 C -0.08 -1.04 8.70 -39.40 -0.34 -1.39 16 21 C -0.14 -1.47 9.69 -39.58 -0.38 -1.85 16 22 C -0.06 -0.61 5.88 -104.60 -0.62 -1.23 16 23 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 24 C -0.19 -1.89 8.69 -39.47 -0.34 -2.23 16 25 C 0.11 1.30 6.71 -39.04 -0.26 1.04 16 26 O -0.31 -3.54 10.06 -19.61 -0.20 -3.73 16 27 C 0.03 0.20 9.81 101.05 0.99 1.19 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.96 5.65 -51.93 -0.29 0.66 16 30 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 31 H 0.06 1.33 3.21 -51.93 -0.17 1.17 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.41 7.98 8.01 -40.82 -0.33 7.65 16 35 H 0.42 5.87 8.05 -40.82 -0.33 5.54 16 36 H 0.15 2.11 6.19 -52.48 -0.32 1.79 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 40 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 42 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 43 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -31.17 357.08 -5.90 -37.07 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.87 Total: 11.28 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.65 Total: 1.23 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.44 Total: -48.64 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.05 Total: -23.48 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.15 Total: 17.16 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.17 -5.90 -37.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128090614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.748 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds