Wall clock time and date at job start Tue Mar 31 2020 12:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46753 * 2 1 4 4 H 1.09002 * 109.47006 * 305.00105 * 3 2 1 5 5 C 1.50697 * 109.46973 * 185.00232 * 3 2 1 6 6 H 1.08001 * 120.00230 * 240.00312 * 5 3 2 7 7 C 1.37876 * 120.00058 * 60.00191 * 5 3 2 8 8 N 1.31513 * 120.00378 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00029 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47166 * 269.99959 * 9 7 5 11 11 H 1.48503 * 109.46762 * 30.00141 * 9 7 5 12 12 H 1.48497 * 109.47037 * 150.00070 * 9 7 5 13 13 N 1.46497 * 109.46990 * 65.00351 * 3 2 1 14 14 C 1.34782 * 119.99880 * 274.99802 * 13 3 2 15 15 O 1.21359 * 120.00063 * 359.97438 * 14 13 3 16 16 C 1.49336 * 119.99533 * 179.97438 * 14 13 3 17 17 O 1.21387 * 120.00706 * 0.02562 * 16 14 13 18 18 N 1.34782 * 119.99533 * 179.97438 * 16 14 13 19 19 C 1.39880 * 119.99618 * 175.53483 * 18 16 14 20 20 C 1.38796 * 120.09895 * 34.66305 * 19 18 16 21 21 C 1.38164 * 119.97861 * 179.77074 * 20 19 18 22 22 C 1.38306 * 120.17048 * 0.50611 * 21 20 19 23 23 C 1.50701 * 119.90170 * 179.77277 * 22 21 20 24 24 C 1.38237 * 120.19960 * 359.74304 * 22 21 20 25 25 C 1.38554 * 120.01630 * 0.02562 * 24 22 21 26 26 O 1.35957 * 120.08733 * 179.97438 * 25 24 22 27 27 C 1.42899 * 117.00070 * 0.02766 * 26 25 24 28 28 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47168 * 299.99394 * 1 2 3 30 30 H 1.08997 * 109.47471 * 59.99998 * 1 2 3 31 31 H 1.09004 * 109.46743 * 240.00597 * 2 1 3 32 32 H 1.08992 * 109.47260 * 120.00404 * 2 1 3 33 33 H 0.96997 * 120.00501 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00100 * 94.99505 * 13 3 2 35 35 H 0.96999 * 120.00092 * 355.53027 * 18 16 14 36 36 H 1.08003 * 120.00850 * 359.97438 * 20 19 18 37 37 H 1.07992 * 119.91589 * 180.22763 * 21 20 19 38 38 H 1.08999 * 109.46725 * 269.97596 * 23 22 21 39 39 H 1.09001 * 109.47595 * 29.97069 * 23 22 21 40 40 H 1.08998 * 109.47639 * 149.97386 * 23 22 21 41 41 H 1.07999 * 119.99369 * 180.02562 * 24 22 21 42 42 H 1.08998 * 109.46974 * 299.99438 * 27 26 25 43 43 H 1.09003 * 109.47448 * 59.99267 * 27 26 25 44 44 H 1.08999 * 109.47187 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1431 0.8786 -1.2281 8 7 5.4538 0.8797 -1.3360 9 14 3.0962 0.1090 -2.5702 10 1 2.8755 -1.3271 -2.2635 11 1 1.7875 0.8075 -2.6387 12 1 3.7934 0.2350 -3.8752 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3399 2.6326 0.4336 16 6 0.0398 3.3314 2.6433 17 8 0.8150 3.3635 3.5769 18 7 -1.1774 3.8987 2.7584 19 6 -1.5834 4.4409 3.9822 20 6 -0.6567 5.0553 4.8130 21 6 -1.0613 5.5942 6.0191 22 6 -2.3865 5.5142 6.4066 23 6 -2.8202 6.0995 7.7258 24 6 -3.3146 4.8993 5.5871 25 6 -2.9186 4.3604 4.3737 26 8 -3.8301 3.7549 3.5668 27 6 -5.1803 3.7104 4.0324 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 5.8769 0.4820 -2.1130 34 1 2.2719 2.1231 1.9978 35 1 -1.7717 3.9310 1.9925 36 1 0.3798 5.1149 4.5152 37 1 -0.3400 6.0752 6.6631 38 1 -2.7361 5.3417 8.5047 39 1 -2.1826 6.9480 7.9741 40 1 -3.8556 6.4323 7.6529 41 1 -4.3487 4.8391 5.8927 42 1 -5.2210 3.1693 4.9778 43 1 -5.5478 4.7261 4.1791 44 1 -5.8022 3.2022 3.2955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128090614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:51 Heat of formation + Delta-G solvation = -98.284556 kcal Electronic energy + Delta-G solvation = -26903.474043 eV Core-core repulsion = 23013.721901 eV Total energy + Delta-G solvation = -3889.752142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -42.24206 -41.12082 -39.84015 -38.47369 -37.39433 -36.25187 -34.43326 -33.26578 -32.55353 -31.15890 -29.65860 -28.72247 -27.62345 -25.68981 -24.44799 -23.61061 -22.67215 -21.92142 -21.29635 -20.24853 -18.99818 -18.48817 -18.17975 -17.56327 -17.42809 -17.11670 -16.76297 -16.61280 -16.03549 -15.67778 -15.25659 -15.23486 -15.02882 -14.82119 -14.66993 -14.46624 -14.11516 -13.80411 -13.70330 -13.37385 -13.16459 -13.01883 -12.99462 -12.85229 -12.68502 -12.43169 -12.33946 -12.10110 -11.93834 -11.86967 -11.39773 -11.30520 -11.30195 -10.89229 -10.61982 -10.00344 -9.62788 -8.86662 -8.38967 -6.46907 -0.07126 0.37081 0.54926 1.28822 1.29227 1.36732 1.46345 2.09879 2.25075 2.25782 2.66479 2.70984 2.95949 3.41181 3.79592 3.87794 4.15638 4.19115 4.26768 4.28175 4.34885 4.39194 4.41758 4.43491 4.65496 4.75015 4.75632 4.83004 4.89162 4.96876 5.03487 5.05566 5.07684 5.15417 5.26969 5.29683 5.37177 5.44957 5.47848 5.60602 5.79567 5.84952 6.10113 6.33661 6.48715 6.56467 6.73015 6.96330 7.20800 8.76361 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.002926 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.809259 B = 9566.755197 C =10467.304985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.248 3.752 4 H 0.039 0.961 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.939 3.061 10 H -0.258 1.258 11 H -0.252 1.252 12 H -0.292 1.292 13 N -0.667 5.667 14 C 0.502 3.498 15 O -0.540 6.540 16 C 0.513 3.487 17 O -0.523 6.523 18 N -0.626 5.626 19 C 0.075 3.925 20 C -0.095 4.095 21 C -0.145 4.145 22 C -0.056 4.056 23 C -0.112 4.112 24 C -0.192 4.192 25 C 0.108 3.892 26 O -0.335 6.335 27 C 0.019 3.981 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.272 0.728 34 H 0.411 0.589 35 H 0.427 0.573 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.161 0.839 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.370 8.332 16.097 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.170 4.170 8 N -0.571 5.571 9 Si 0.765 3.235 10 H -0.183 1.183 11 H -0.176 1.176 12 H -0.220 1.220 13 N -0.316 5.316 14 C 0.282 3.718 15 O -0.419 6.419 16 C 0.295 3.705 17 O -0.399 6.399 18 N -0.272 5.272 19 C -0.019 4.019 20 C -0.115 4.115 21 C -0.164 4.164 22 C -0.057 4.057 23 C -0.168 4.168 24 C -0.211 4.211 25 C 0.061 3.939 26 O -0.249 6.249 27 C -0.075 4.075 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.266 0.734 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.179 0.821 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -23.167 8.142 15.753 29.174 hybrid contribution 0.333 -0.396 -0.856 1.000 sum -22.834 7.745 14.897 28.343 Atomic orbital electron populations 1.21794 0.94835 1.01103 1.01663 1.22241 0.96177 0.97917 1.01489 1.19044 0.93716 0.90058 0.82732 0.94349 1.21223 0.90096 1.39302 1.07257 0.92951 1.25597 0.95866 0.95646 0.99909 1.69980 1.10479 1.45795 1.30885 0.85992 0.79493 0.80035 0.77944 1.18330 1.17584 1.21980 1.45926 1.14520 1.53333 1.17849 1.19914 0.83386 0.80600 0.87914 1.90724 1.51370 1.59625 1.40176 1.20260 0.82755 0.79286 0.88218 1.90724 1.50972 1.58007 1.40148 1.42829 1.16584 1.54973 1.12832 1.17330 0.91650 1.03841 0.89078 1.21211 0.99410 0.95764 0.95083 1.21128 0.96634 1.02359 0.96271 1.20145 0.92459 0.95850 0.97213 1.20869 1.02854 1.01158 0.91943 1.21248 1.02049 1.04207 0.93552 1.18886 0.87943 0.95842 0.91252 1.86056 1.19889 1.73613 1.45367 1.23378 0.78430 1.03354 1.02327 0.91832 0.93349 0.93400 0.92986 0.91439 0.91917 0.75319 0.73424 0.85228 0.83643 0.89986 0.90290 0.89930 0.82111 0.91463 0.90948 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.51 71.98 0.61 -4.48 16 2 C -0.14 -5.97 5.11 30.60 0.16 -5.81 16 3 C 0.25 11.72 1.83 44.25 0.08 11.80 16 4 H 0.04 1.95 6.64 -2.39 -0.02 1.93 16 5 C -0.54 -29.90 9.31 25.60 0.24 -29.66 16 6 H 0.05 3.14 7.98 -2.91 -0.02 3.12 16 7 C 0.03 1.69 5.45 84.65 0.46 2.15 16 8 N -0.93 -56.32 13.96 21.45 0.30 -56.02 16 9 Si 0.94 43.87 24.41 68.60 1.67 45.54 16 10 H -0.26 -11.29 6.83 99.48 0.68 -10.61 16 11 H -0.25 -11.36 6.53 99.48 0.65 -10.71 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 N -0.67 -27.86 5.01 -447.55 -2.24 -30.10 16 14 C 0.50 19.36 6.45 87.23 0.56 19.92 16 15 O -0.54 -21.96 13.62 -3.28 -0.04 -22.01 16 16 C 0.51 17.71 7.73 87.23 0.67 18.39 16 17 O -0.52 -19.37 13.89 -3.36 -0.05 -19.41 16 18 N -0.63 -18.56 5.17 -304.48 -1.57 -20.13 16 19 C 0.07 2.04 6.32 38.26 0.24 2.28 16 20 C -0.09 -2.50 8.70 22.39 0.19 -2.31 16 21 C -0.15 -2.91 9.69 22.27 0.22 -2.70 16 22 C -0.06 -0.91 5.88 -19.85 -0.12 -1.02 16 23 C -0.11 -1.00 10.01 71.24 0.71 -0.28 16 24 C -0.19 -3.19 8.69 22.34 0.19 -3.00 16 25 C 0.11 2.42 6.71 22.62 0.15 2.58 16 26 O -0.34 -6.98 10.06 -93.07 -0.94 -7.92 16 27 C 0.02 0.21 9.81 113.37 1.11 1.32 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.80 5.65 -2.39 -0.01 1.78 16 30 H 0.05 1.84 7.85 -2.39 -0.02 1.83 16 31 H 0.05 2.28 3.21 -2.38 -0.01 2.28 16 32 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.41 16.68 8.01 -92.71 -0.74 15.94 16 35 H 0.43 11.88 8.05 -92.71 -0.75 11.13 16 36 H 0.13 3.86 6.19 -2.91 -0.02 3.84 16 37 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 40 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 41 H 0.16 1.63 6.30 -2.91 -0.02 1.61 16 42 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 43 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 44 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -68.54 357.08 2.11 -66.43 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.51 Total: 34.46 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 5.49 Total: 9.17 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.52 Total: -106.26 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -1.03 Total: -49.34 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.67 Total: 45.54 kcal Total: -68.54 2.11 -66.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128090614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.850 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds