Wall clock time and date at job start Tue Mar 31 2020 12:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 H 1.09001 * 109.46907 * 304.99982 * 3 2 1 5 5 C 1.50706 * 109.47159 * 184.99912 * 3 2 1 6 6 H 1.07993 * 119.99956 * 239.99802 * 5 3 2 7 7 C 1.37875 * 119.99649 * 59.99665 * 5 3 2 8 8 N 1.31515 * 120.00518 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99604 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47091 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46692 * 120.00406 * 9 7 5 12 12 H 1.48498 * 109.47191 * 240.00382 * 9 7 5 13 13 N 1.46505 * 109.47075 * 64.99798 * 3 2 1 14 14 C 1.34770 * 120.00070 * 275.00026 * 13 3 2 15 15 O 1.21366 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.49335 * 120.00173 * 180.02562 * 14 13 3 17 17 O 1.21388 * 119.99761 * 359.97438 * 16 14 13 18 18 N 1.34770 * 120.00173 * 179.97438 * 16 14 13 19 19 C 1.39874 * 120.00137 * 174.47553 * 18 16 14 20 20 C 1.38939 * 120.01841 * 335.14732 * 19 18 16 21 21 C 1.38034 * 119.97720 * 180.02562 * 20 19 18 22 22 C 1.38768 * 120.02242 * 359.97438 * 21 20 19 23 23 O 1.35949 * 119.97944 * 180.02562 * 22 21 20 24 24 C 1.42903 * 117.00159 * 0.02562 * 23 22 21 25 25 C 1.38723 * 120.03981 * 359.97438 * 22 21 20 26 26 C 1.38086 * 120.02216 * 359.76653 * 25 22 21 27 27 C 1.50696 * 120.01511 * 180.27330 * 26 25 22 28 28 H 1.09004 * 109.47281 * 299.99882 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00051 * 1 2 3 30 30 H 1.09004 * 109.47541 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47077 * 239.99604 * 2 1 3 32 32 H 1.09004 * 109.46786 * 119.99813 * 2 1 3 33 33 H 0.96998 * 120.00246 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99714 * 95.00133 * 13 3 2 35 35 H 0.96999 * 120.00096 * 354.47712 * 18 16 14 36 36 H 1.07997 * 120.01048 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.98519 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47141 * 59.99683 * 24 23 22 39 39 H 1.08999 * 109.46855 * 180.02562 * 24 23 22 40 40 H 1.08997 * 109.46818 * 299.99740 * 24 23 22 41 41 H 1.08003 * 119.99232 * 180.02562 * 25 22 21 42 42 H 1.09009 * 109.47142 * 270.23912 * 27 26 25 43 43 H 1.09004 * 109.46797 * 30.23462 * 27 26 25 44 44 H 1.08995 * 109.47265 * 150.23705 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8782 -1.2279 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5987 1.5461 -0.1942 11 1 6.4970 -0.5177 -1.4629 12 1 6.3991 1.6165 -2.6101 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3397 2.6327 0.4334 16 6 0.0403 3.3326 2.6428 17 8 0.8155 3.3647 3.5763 18 7 -1.1768 3.9000 2.7577 19 6 -1.5912 4.4234 3.9868 20 6 -1.0429 3.9402 5.1685 21 6 -1.4528 4.4570 6.3810 22 6 -2.4118 5.4592 6.4200 23 8 -2.8145 5.9680 7.6146 24 6 -2.2081 5.4244 8.7889 25 6 -2.9590 5.9430 5.2406 26 6 -2.5463 5.4310 4.0264 27 6 -3.1364 5.9610 2.7451 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8292 -0.0606 -2.9502 34 1 2.2719 2.1231 1.9978 35 1 -1.7654 3.9453 1.9880 36 1 -0.2962 3.1605 5.1383 37 1 -1.0264 4.0818 7.2996 38 1 -1.1309 5.5864 8.7497 39 1 -2.6181 5.9167 9.6707 40 1 -2.4130 4.3552 8.8419 41 1 -3.7051 6.7234 5.2718 42 1 -4.0224 5.3813 2.4859 43 1 -3.4127 7.0071 2.8777 44 1 -2.4010 5.8781 1.9448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128457335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:51 Heat of formation + Delta-G solvation = -82.416917 kcal Electronic energy + Delta-G solvation = -26661.917154 eV Core-core repulsion = 22772.853084 eV Total energy + Delta-G solvation = -3889.064070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.03904 -39.95025 -38.63673 -37.49947 -35.45073 -34.40045 -32.73063 -32.41183 -31.02388 -29.91876 -27.72618 -27.15809 -26.81517 -24.69840 -23.21636 -22.46127 -21.20422 -20.26842 -19.51597 -18.67834 -17.91524 -17.37265 -16.70329 -16.14679 -15.92985 -15.72294 -15.53079 -15.09158 -14.46669 -14.35893 -14.27922 -14.07383 -13.65755 -13.40935 -13.33393 -12.98929 -12.77671 -12.44601 -12.21725 -12.12664 -12.04704 -11.66603 -11.55935 -11.38764 -11.31127 -11.04332 -10.92485 -10.82173 -10.37174 -10.29342 -10.08381 -9.72716 -9.15906 -9.09694 -8.92217 -8.59513 -8.07185 -7.77622 -6.19963 -4.29616 1.03228 1.19703 1.91715 2.66537 3.06991 3.21099 3.29488 3.33118 3.49595 3.76180 4.06144 4.31247 4.58453 4.66231 4.82095 4.89654 4.93383 5.02546 5.12082 5.14867 5.20299 5.22498 5.40937 5.43665 5.68181 5.77931 5.95744 6.19168 6.24419 6.27714 6.28779 6.33623 6.52573 6.64708 6.91732 6.99017 7.11254 7.18451 7.20549 7.24519 7.47168 7.61090 7.75202 7.88837 8.05480 8.40968 8.59191 8.83268 9.37375 10.85469 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.002624 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.360120 B =10667.259269 C =11204.357479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.667 5.667 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.505 3.495 17 O -0.507 6.507 18 N -0.644 5.644 19 C 0.114 3.886 20 C -0.087 4.087 21 C -0.191 4.191 22 C 0.109 3.891 23 O -0.320 6.320 24 C 0.028 3.972 25 C -0.133 4.133 26 C -0.074 4.074 27 C -0.118 4.118 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.104 0.896 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.422 0.578 36 H 0.150 0.850 37 H 0.131 0.869 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.134 0.866 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 8.547 15.596 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.316 5.316 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.288 3.712 17 O -0.381 6.381 18 N -0.290 5.290 19 C 0.020 3.980 20 C -0.107 4.107 21 C -0.210 4.210 22 C 0.064 3.936 23 O -0.234 6.234 24 C -0.068 4.068 25 C -0.152 4.152 26 C -0.077 4.077 27 C -0.175 4.175 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.122 0.878 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.261 0.739 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.152 0.848 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.510 8.524 15.365 21.570 hybrid contribution 1.200 -0.214 0.081 1.221 sum -11.310 8.311 15.446 20.871 Atomic orbital electron populations 1.21855 0.98288 0.98438 1.01030 1.21965 0.92659 0.99383 1.02792 1.19032 0.94825 0.89401 0.80087 0.92713 1.21240 0.90292 1.39343 1.06578 0.91713 1.24874 0.98846 0.94597 0.95243 1.69889 1.35192 1.37491 1.09320 0.86357 0.84524 0.77846 0.78210 1.19620 1.20799 1.20818 1.46465 1.13337 1.52523 1.19227 1.19581 0.84544 0.81552 0.87045 1.90745 1.51130 1.59586 1.39332 1.21013 0.81408 0.78965 0.89794 1.90684 1.50573 1.56520 1.40331 1.43225 1.17301 1.56784 1.11732 1.17559 0.98712 0.96412 0.85330 1.21239 0.99731 0.99829 0.89872 1.21126 1.00789 1.00174 0.98900 1.18967 0.94843 0.94244 0.85596 1.86045 1.63435 1.61197 1.12676 1.23039 0.98485 0.99385 0.85858 1.20007 1.03238 1.03240 0.88678 1.19417 0.97904 0.94872 0.95517 1.20790 1.01081 1.01729 0.93907 0.94646 0.92917 0.95460 0.87822 0.94655 0.92479 0.76387 0.73942 0.83215 0.85170 0.92598 0.88385 0.92658 0.84846 0.90508 0.90690 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.49 2.24 -69.08 -0.15 6.34 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.91 11.29 55.43 0.63 -23.29 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.67 -13.84 5.01 -55.40 -0.28 -14.12 16 14 C 0.49 9.54 6.45 -11.64 -0.08 9.47 16 15 O -0.53 -11.02 13.62 5.48 0.07 -10.95 16 16 C 0.50 8.46 7.69 -11.64 -0.09 8.37 16 17 O -0.51 -9.04 13.63 5.46 0.07 -8.96 16 18 N -0.64 -8.99 4.95 -10.27 -0.05 -9.04 16 19 C 0.11 1.52 6.41 -83.68 -0.54 0.99 16 20 C -0.09 -1.17 8.71 -39.40 -0.34 -1.52 16 21 C -0.19 -2.21 9.03 -39.46 -0.36 -2.56 16 22 C 0.11 1.24 6.69 -39.21 -0.26 0.98 16 23 O -0.32 -3.33 10.50 -19.58 -0.21 -3.53 16 24 C 0.03 0.19 9.81 101.05 0.99 1.18 16 25 C -0.13 -1.44 9.63 -39.46 -0.38 -1.82 16 26 C -0.07 -0.84 5.90 -104.44 -0.62 -1.45 16 27 C -0.12 -1.02 9.44 36.00 0.34 -0.68 16 28 H 0.03 0.72 5.65 -51.93 -0.29 0.43 16 29 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.40 7.84 8.01 -40.82 -0.33 7.51 16 35 H 0.42 5.27 6.89 -40.82 -0.28 4.99 16 36 H 0.15 2.20 5.78 -52.49 -0.30 1.90 16 37 H 0.13 1.22 6.29 -52.48 -0.33 0.89 16 38 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 41 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 42 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 43 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 44 H 0.07 0.64 6.99 -51.93 -0.36 0.27 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -29.35 360.92 -6.93 -36.28 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.88 Total: 11.87 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.71 Total: 1.04 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.30 Total: -46.45 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.06 Total: -23.44 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.35 -6.93 -36.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128457335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.140 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds