Wall clock time and date at job start Tue Mar 31 2020 12:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 H 1.09001 * 109.46907 * 304.99982 * 3 2 1 5 5 C 1.50706 * 109.47159 * 184.99912 * 3 2 1 6 6 H 1.07993 * 119.99956 * 239.99802 * 5 3 2 7 7 C 1.37875 * 119.99649 * 59.99665 * 5 3 2 8 8 N 1.31515 * 120.00518 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99604 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47091 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46692 * 120.00406 * 9 7 5 12 12 H 1.48498 * 109.47191 * 240.00382 * 9 7 5 13 13 N 1.46505 * 109.47075 * 64.99798 * 3 2 1 14 14 C 1.34770 * 120.00070 * 275.00026 * 13 3 2 15 15 O 1.21366 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.49335 * 120.00173 * 180.02562 * 14 13 3 17 17 O 1.21388 * 119.99761 * 359.97438 * 16 14 13 18 18 N 1.34770 * 120.00173 * 179.97438 * 16 14 13 19 19 C 1.39874 * 120.00137 * 174.47553 * 18 16 14 20 20 C 1.38939 * 120.01841 * 335.14732 * 19 18 16 21 21 C 1.38034 * 119.97720 * 180.02562 * 20 19 18 22 22 C 1.38768 * 120.02242 * 359.97438 * 21 20 19 23 23 O 1.35949 * 119.97944 * 180.02562 * 22 21 20 24 24 C 1.42903 * 117.00159 * 0.02562 * 23 22 21 25 25 C 1.38723 * 120.03981 * 359.97438 * 22 21 20 26 26 C 1.38086 * 120.02216 * 359.76653 * 25 22 21 27 27 C 1.50696 * 120.01511 * 180.27330 * 26 25 22 28 28 H 1.09004 * 109.47281 * 299.99882 * 1 2 3 29 29 H 1.08994 * 109.47343 * 60.00051 * 1 2 3 30 30 H 1.09004 * 109.47541 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47077 * 239.99604 * 2 1 3 32 32 H 1.09004 * 109.46786 * 119.99813 * 2 1 3 33 33 H 0.96998 * 120.00246 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99714 * 95.00133 * 13 3 2 35 35 H 0.96999 * 120.00096 * 354.47712 * 18 16 14 36 36 H 1.07997 * 120.01048 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.98519 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47141 * 59.99683 * 24 23 22 39 39 H 1.08999 * 109.46855 * 180.02562 * 24 23 22 40 40 H 1.08997 * 109.46818 * 299.99740 * 24 23 22 41 41 H 1.08003 * 119.99232 * 180.02562 * 25 22 21 42 42 H 1.09009 * 109.47142 * 270.23912 * 27 26 25 43 43 H 1.09004 * 109.46797 * 30.23462 * 27 26 25 44 44 H 1.08995 * 109.47265 * 150.23705 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8782 -1.2279 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5987 1.5461 -0.1942 11 1 6.4970 -0.5177 -1.4629 12 1 6.3991 1.6165 -2.6101 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3397 2.6327 0.4334 16 6 0.0403 3.3326 2.6428 17 8 0.8155 3.3647 3.5763 18 7 -1.1768 3.9000 2.7577 19 6 -1.5912 4.4234 3.9868 20 6 -1.0429 3.9402 5.1685 21 6 -1.4528 4.4570 6.3810 22 6 -2.4118 5.4592 6.4200 23 8 -2.8145 5.9680 7.6146 24 6 -2.2081 5.4244 8.7889 25 6 -2.9590 5.9430 5.2406 26 6 -2.5463 5.4310 4.0264 27 6 -3.1364 5.9610 2.7451 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8292 -0.0606 -2.9502 34 1 2.2719 2.1231 1.9978 35 1 -1.7654 3.9453 1.9880 36 1 -0.2962 3.1605 5.1383 37 1 -1.0264 4.0818 7.2996 38 1 -1.1309 5.5864 8.7497 39 1 -2.6181 5.9167 9.6707 40 1 -2.4130 4.3552 8.8419 41 1 -3.7051 6.7234 5.2718 42 1 -4.0224 5.3813 2.4859 43 1 -3.4127 7.0071 2.8777 44 1 -2.4010 5.8781 1.9448 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128457335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:50 Heat of formation + Delta-G solvation = -101.400673 kcal Electronic energy + Delta-G solvation = -26662.740351 eV Core-core repulsion = 22772.853084 eV Total energy + Delta-G solvation = -3889.887267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.23672 -41.03856 -39.96311 -38.56336 -37.18802 -35.60305 -34.31464 -33.55123 -32.82356 -30.80735 -29.23068 -28.36754 -27.49071 -26.14342 -24.84835 -23.69230 -22.17238 -21.76436 -21.20263 -20.08161 -18.75919 -18.56101 -18.21766 -17.52478 -17.21238 -17.05477 -16.63695 -16.59059 -15.95869 -15.66796 -15.32457 -15.04501 -14.94786 -14.63126 -14.56815 -14.20576 -13.86289 -13.82582 -13.51042 -13.21718 -13.15506 -12.95981 -12.89126 -12.76836 -12.73198 -12.62084 -12.39269 -12.16347 -12.11240 -11.80700 -11.60493 -11.10874 -11.09124 -10.61144 -10.50776 -9.85126 -9.82551 -8.74027 -8.19255 -6.36050 -0.05909 0.27866 0.66588 1.32277 1.43700 1.46609 1.57626 2.14331 2.36065 2.39461 2.71046 2.75473 3.10763 3.48126 3.78256 3.82087 4.06023 4.26546 4.31829 4.41238 4.44693 4.48180 4.52277 4.54456 4.70861 4.74659 4.78931 4.82887 4.97240 5.01566 5.17984 5.21562 5.28114 5.32149 5.33893 5.36280 5.38758 5.55919 5.66909 5.71801 5.79219 6.03133 6.10964 6.40062 6.54993 6.66729 6.78942 7.09743 7.35942 8.86132 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.002624 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.360120 B =10667.259269 C =11204.357479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.512 3.488 17 O -0.520 6.520 18 N -0.627 5.627 19 C 0.086 3.914 20 C -0.102 4.102 21 C -0.195 4.195 22 C 0.110 3.890 23 O -0.329 6.329 24 C 0.017 3.983 25 C -0.137 4.137 26 C -0.067 4.067 27 C -0.119 4.119 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.267 0.733 34 H 0.408 0.592 35 H 0.428 0.572 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.060 0.940 39 H 0.122 0.878 40 H 0.063 0.937 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.198 9.535 17.258 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.207 1.207 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.425 6.425 16 C 0.295 3.705 17 O -0.396 6.396 18 N -0.273 5.273 19 C -0.008 4.008 20 C -0.122 4.122 21 C -0.214 4.214 22 C 0.064 3.936 23 O -0.243 6.243 24 C -0.077 4.077 25 C -0.156 4.156 26 C -0.069 4.069 27 C -0.176 4.176 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.244 0.756 35 H 0.268 0.732 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.079 0.921 39 H 0.140 0.860 40 H 0.081 0.919 41 H 0.173 0.827 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.279 9.535 17.062 23.629 hybrid contribution 1.310 -0.443 -0.326 1.421 sum -11.969 9.092 16.736 22.495 Atomic orbital electron populations 1.21707 0.96541 0.99684 1.00416 1.21822 0.94164 0.98553 1.01709 1.18651 0.94093 0.89586 0.80300 0.96637 1.21540 0.91217 1.39405 1.06867 0.91439 1.25674 1.03136 0.94199 0.94910 1.70013 1.36917 1.38042 1.09767 0.85352 0.79289 0.77905 0.78141 1.18961 1.20300 1.20743 1.46234 1.14285 1.53096 1.18361 1.19975 0.83712 0.80861 0.87879 1.90731 1.51454 1.59941 1.40330 1.20334 0.82346 0.79529 0.88340 1.90689 1.51235 1.57480 1.40211 1.43043 1.16153 1.55637 1.12509 1.17752 1.00365 0.98045 0.84611 1.21210 0.99985 1.00061 0.90909 1.21275 1.00973 1.00264 0.98900 1.19155 0.94263 0.93704 0.86430 1.86045 1.63750 1.61433 1.13075 1.23338 0.98908 1.00211 0.85232 1.20322 1.03443 1.03505 0.88307 1.19676 0.96661 0.93679 0.96880 1.20883 1.01320 1.03068 0.92315 0.94175 0.94485 0.93239 0.90272 0.94168 0.92364 0.75648 0.73177 0.84868 0.83423 0.92137 0.86013 0.91865 0.82683 0.88934 0.88794 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.72 16 3 C 0.28 13.77 2.24 44.25 0.10 13.86 16 4 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 5 C -0.55 -28.94 8.73 25.60 0.22 -28.72 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -50.28 11.29 21.45 0.24 -50.04 16 9 Si 0.97 41.70 29.54 68.60 2.03 43.73 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 13 N -0.67 -28.36 5.01 -447.53 -2.24 -30.61 16 14 C 0.50 19.41 6.45 87.23 0.56 19.97 16 15 O -0.55 -23.06 13.62 -3.30 -0.04 -23.10 16 16 C 0.51 17.21 7.69 87.23 0.67 17.88 16 17 O -0.52 -18.69 13.63 -3.37 -0.05 -18.73 16 18 N -0.63 -17.26 4.95 -304.75 -1.51 -18.77 16 19 C 0.09 2.22 6.41 38.18 0.24 2.47 16 20 C -0.10 -2.71 8.71 22.39 0.20 -2.51 16 21 C -0.20 -4.28 9.03 22.35 0.20 -4.08 16 22 C 0.11 2.31 6.69 22.51 0.15 2.46 16 23 O -0.33 -6.07 10.50 -92.97 -0.98 -7.05 16 24 C 0.02 0.19 9.81 113.37 1.11 1.30 16 25 C -0.14 -2.66 9.63 22.35 0.22 -2.44 16 26 C -0.07 -1.38 5.90 -19.74 -0.12 -1.49 16 27 C -0.12 -1.79 9.44 71.23 0.67 -1.11 16 28 H 0.04 1.63 5.65 -2.38 -0.01 1.62 16 29 H 0.04 1.65 7.85 -2.39 -0.02 1.63 16 30 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.08 4.19 5.95 -2.39 -0.01 4.18 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.41 16.16 8.01 -92.71 -0.74 15.42 16 35 H 0.43 10.46 6.89 -92.71 -0.64 9.83 16 36 H 0.13 3.97 5.78 -2.91 -0.02 3.96 16 37 H 0.15 2.56 6.29 -2.91 -0.02 2.54 16 38 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 41 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 44 H 0.06 1.06 6.99 -2.39 -0.02 1.04 16 Total: -1.00 -63.43 360.92 2.58 -60.85 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.33 Total: 34.99 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 5.46 Total: 8.73 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -3.51 Total: -99.42 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -1.07 Total: -48.88 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -63.43 2.58 -60.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128457335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.547 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds