Wall clock time and date at job start Tue Mar 31 2020 12:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47480 * 2 1 4 4 C 1.35895 * 117.00595 * 180.02562 * 3 2 1 5 5 C 1.38824 * 120.01178 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.09472 * 180.02562 * 5 4 3 7 7 C 1.38154 * 120.12734 * 359.68291 * 6 5 4 8 8 C 1.38945 * 120.03188 * 0.59112 * 7 6 5 9 9 N 1.39727 * 120.04473 * 179.69909 * 8 7 6 10 10 C 1.34781 * 119.99959 * 211.70546 * 9 8 7 11 11 O 1.21375 * 119.99709 * 5.58048 * 10 9 8 12 12 C 1.49355 * 119.99928 * 185.58503 * 10 9 8 13 13 O 1.21355 * 119.99876 * 359.97438 * 12 10 9 14 14 N 1.34766 * 119.99681 * 180.02562 * 12 10 9 15 15 C 1.46504 * 119.99833 * 179.97438 * 14 12 10 16 16 H 1.09001 * 109.47243 * 324.99787 * 15 14 12 17 17 C 1.50703 * 109.47124 * 204.99839 * 15 14 12 18 18 H 1.07991 * 120.00031 * 354.41659 * 17 15 14 19 19 C 1.37884 * 119.99871 * 174.42680 * 17 15 14 20 20 N 1.31509 * 119.99919 * 156.79728 * 19 17 15 21 21 Si 1.86807 * 119.99831 * 336.79324 * 19 17 15 22 22 H 1.48494 * 109.46944 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.46996 * 300.00530 * 21 19 17 24 24 H 1.48505 * 109.46949 * 60.00400 * 21 19 17 25 25 C 1.52998 * 109.47072 * 84.99764 * 15 14 12 26 26 C 1.53002 * 109.47155 * 294.25764 * 25 15 14 27 27 C 1.38556 * 120.02089 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46805 * 300.00270 * 1 2 3 30 30 H 1.09000 * 109.47146 * 59.99528 * 1 2 3 31 31 H 1.09003 * 109.47000 * 240.00243 * 2 1 3 32 32 H 1.09000 * 109.47146 * 120.00472 * 2 1 3 33 33 H 1.08001 * 119.95642 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.93517 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.98478 * 180.29915 * 7 6 5 36 36 H 0.97001 * 120.00037 * 31.70872 * 9 8 7 37 37 H 0.96999 * 120.00919 * 359.97438 * 14 12 10 38 38 H 0.96996 * 120.00281 * 354.92311 * 20 19 17 39 39 H 1.09000 * 109.47269 * 54.26045 * 25 15 14 40 40 H 1.09003 * 109.47076 * 174.25678 * 25 15 14 41 41 H 1.09005 * 109.47269 * 180.02562 * 26 25 15 42 42 H 1.09004 * 109.47256 * 299.99785 * 26 25 15 43 43 H 1.09003 * 109.47198 * 59.99989 * 26 25 15 44 44 H 1.07996 * 120.06759 * 0.04270 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1996 0.4246 -0.0016 6 6 5.5697 0.6038 -0.0016 7 6 6.1024 1.8785 -0.0072 8 6 5.2607 2.9839 -0.0004 9 7 5.7992 4.2732 0.0003 10 6 5.1455 5.2762 0.6194 11 8 4.1427 5.0417 1.2617 12 6 5.6551 6.6763 0.5151 13 8 6.6580 6.9107 -0.1268 14 7 5.0018 7.6790 1.1346 15 6 5.5019 9.0523 1.0327 16 1 6.5916 9.0413 1.0090 17 6 5.0333 9.8473 2.2241 18 1 4.3510 9.4043 2.9343 19 6 5.4757 11.1403 2.4073 20 7 4.7691 11.9806 3.1312 21 14 7.0787 11.6984 1.6272 22 1 7.3287 13.1206 1.9733 23 1 8.1947 10.8618 2.1368 24 1 6.9870 11.5562 0.1518 25 6 4.9704 9.6948 -0.2501 26 6 5.5614 8.9747 -1.4639 27 6 3.8836 2.8055 -0.0011 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7862 -0.5732 -0.0016 34 1 6.2254 -0.2544 -0.0020 35 1 7.1736 2.0158 -0.0121 36 1 6.6435 4.4465 -0.4448 37 1 4.2003 7.4917 1.6479 38 1 3.9020 11.7145 3.4749 39 1 3.8837 9.6143 -0.2735 40 1 5.2575 10.7460 -0.2759 41 1 5.1832 9.4327 -2.3779 42 1 6.6483 9.0553 -1.4405 43 1 5.2744 7.9235 -1.4381 44 1 3.2270 3.6630 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128500867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:36 Heat of formation + Delta-G solvation = -84.709237 kcal Electronic energy + Delta-G solvation = -26488.335477 eV Core-core repulsion = 22599.172005 eV Total energy + Delta-G solvation = -3889.163472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.03159 -40.03560 -38.72130 -37.49963 -35.64241 -34.63016 -32.51096 -32.29462 -31.50160 -30.22235 -29.48538 -27.52976 -25.16736 -23.84280 -23.03312 -22.40954 -21.58487 -20.37447 -19.68678 -19.07441 -18.35012 -17.24759 -16.68962 -16.40099 -16.31623 -16.09711 -15.67723 -15.57158 -14.95287 -14.38568 -13.90791 -13.76522 -13.62854 -13.55916 -13.40628 -12.91883 -12.70743 -12.56238 -12.47807 -12.39407 -12.31537 -11.92919 -11.81316 -11.52574 -11.21690 -11.03782 -10.90445 -10.76931 -10.51034 -10.44478 -9.94123 -9.80359 -9.27772 -9.19725 -8.59440 -8.36470 -8.33246 -8.25236 -6.65530 -4.27057 0.92956 1.24333 1.78743 2.48191 2.96561 3.35953 3.41650 3.42676 3.56943 3.67860 3.98222 4.39315 4.52302 4.57850 4.72965 4.77725 4.89430 4.91696 4.95328 5.04763 5.06335 5.25453 5.32615 5.44599 5.61228 5.69923 5.97271 5.99660 6.00496 6.03452 6.14619 6.16141 6.23058 6.55328 6.59434 6.68894 6.78511 6.89824 6.97849 7.18698 7.22342 7.25996 7.50617 7.75788 8.18067 8.24452 8.47242 8.75253 9.39233 10.73389 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.002679 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.668143 B =10448.442747 C =11096.622702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.313 6.313 4 C 0.150 3.850 5 C -0.228 4.228 6 C -0.060 4.060 7 C -0.182 4.182 8 C 0.190 3.810 9 N -0.650 5.650 10 C 0.506 3.494 11 O -0.497 6.497 12 C 0.496 3.504 13 O -0.531 6.531 14 N -0.660 5.660 15 C 0.248 3.752 16 H 0.046 0.954 17 C -0.629 4.629 18 H 0.066 0.934 19 C 0.048 3.952 20 N -0.886 5.886 21 Si 1.031 2.969 22 H -0.282 1.282 23 H -0.280 1.280 24 H -0.271 1.271 25 C -0.135 4.135 26 C -0.145 4.145 27 C -0.159 4.159 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.425 0.575 37 H 0.406 0.594 38 H 0.272 0.728 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -24.282 -8.648 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.227 6.227 4 C 0.104 3.896 5 C -0.247 4.247 6 C -0.079 4.079 7 C -0.203 4.203 8 C 0.095 3.905 9 N -0.297 5.297 10 C 0.289 3.711 11 O -0.369 6.369 12 C 0.274 3.726 13 O -0.409 6.409 14 N -0.309 5.309 15 C 0.145 3.855 16 H 0.064 0.936 17 C -0.666 4.666 18 H 0.084 0.916 19 C -0.160 4.160 20 N -0.517 5.517 21 Si 0.858 3.142 22 H -0.207 1.207 23 H -0.206 1.206 24 H -0.197 1.197 25 C -0.174 4.174 26 C -0.203 4.203 27 C -0.179 4.179 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.263 0.737 37 H 0.242 0.758 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.978 -22.697 -8.706 24.330 hybrid contribution -0.995 -1.615 0.232 1.911 sum -1.973 -24.312 -8.475 25.823 Atomic orbital electron populations 1.21784 0.92699 1.02786 1.03769 1.22790 0.95951 0.81954 1.01338 1.86103 1.18898 1.29255 1.88399 1.18678 0.82394 0.93391 0.95115 1.21202 0.94364 0.97911 1.11253 1.20678 0.94238 0.96470 0.96465 1.20819 0.99615 0.91348 1.08469 1.17390 0.91660 0.83931 0.97482 1.43244 1.26185 1.06102 1.54200 1.20939 0.84081 0.87170 0.78890 1.90774 1.24209 1.84150 1.37784 1.19633 0.85401 0.85295 0.82247 1.90734 1.24994 1.83897 1.41306 1.46223 1.28668 1.08138 1.47842 1.19255 0.95465 0.75947 0.94837 0.93613 1.22002 1.34027 1.00286 1.10284 0.91623 1.25638 1.02403 0.92158 0.95834 1.70851 1.12577 1.35466 1.32842 0.84218 0.76240 0.76664 0.77083 1.20738 1.20578 1.19725 1.22295 1.00229 1.00211 0.94682 1.21910 1.01087 0.99866 0.97421 1.20336 0.93869 0.96190 1.07554 0.90388 0.91363 0.91445 0.92031 0.91990 0.85490 0.85274 0.85224 0.73656 0.75848 0.91745 0.92762 0.91224 0.94700 0.92793 0.93613 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.43 5.46 37.16 0.20 0.63 16 3 O -0.31 -3.77 10.13 -19.41 -0.20 -3.97 16 4 C 0.15 1.87 6.68 -39.25 -0.26 1.61 16 5 C -0.23 -2.24 9.04 -39.38 -0.36 -2.60 16 6 C -0.06 -0.54 10.03 -39.63 -0.40 -0.94 16 7 C -0.18 -1.88 9.96 -39.35 -0.39 -2.27 16 8 C 0.19 2.48 6.30 -83.77 -0.53 1.95 16 9 N -0.65 -8.78 5.33 -10.31 -0.05 -8.84 16 10 C 0.51 8.42 7.63 -11.63 -0.09 8.33 16 11 O -0.50 -9.15 14.08 5.48 0.08 -9.07 16 12 C 0.50 9.31 6.49 -11.63 -0.08 9.23 16 13 O -0.53 -10.48 13.63 5.49 0.07 -10.40 16 14 N -0.66 -13.58 5.02 -55.39 -0.28 -13.86 16 15 C 0.25 5.77 1.83 -69.08 -0.13 5.65 16 16 H 0.05 1.13 6.15 -51.93 -0.32 0.81 16 17 C -0.63 -16.76 8.95 -34.44 -0.31 -17.07 16 18 H 0.07 1.86 7.96 -52.49 -0.42 1.44 16 19 C 0.05 1.32 5.20 -17.82 -0.09 1.23 16 20 N -0.89 -25.91 13.70 55.43 0.76 -25.15 16 21 Si 1.03 24.28 26.45 -169.99 -4.50 19.78 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -5.96 6.12 56.52 0.35 -5.61 16 25 C -0.14 -2.94 5.33 -26.73 -0.14 -3.08 16 26 C -0.15 -2.81 8.53 37.16 0.32 -2.49 16 27 C -0.16 -2.26 8.60 -39.23 -0.34 -2.59 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 33 H 0.13 0.92 6.29 -52.49 -0.33 0.59 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.42 4.89 8.29 -40.82 -0.34 4.55 16 37 H 0.41 8.10 7.99 -40.82 -0.33 7.78 16 38 H 0.27 7.90 8.73 -40.82 -0.36 7.55 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.57 5.45 -51.93 -0.28 1.29 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 43 H 0.04 0.87 5.63 -51.93 -0.29 0.58 16 44 H 0.14 2.32 6.32 -52.49 -0.33 1.99 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -30.92 361.84 -6.88 -37.80 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -6.01 Total: 11.25 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.20 Total: -3.00 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.43 Total: -47.84 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.04 Total: -23.44 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.50 Total: 19.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.92 -6.88 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128500867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.912 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds