Wall clock time and date at job start Tue Mar 31 2020 12:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47480 * 2 1 4 4 C 1.35895 * 117.00595 * 180.02562 * 3 2 1 5 5 C 1.38824 * 120.01178 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.09472 * 180.02562 * 5 4 3 7 7 C 1.38154 * 120.12734 * 359.68291 * 6 5 4 8 8 C 1.38945 * 120.03188 * 0.59112 * 7 6 5 9 9 N 1.39727 * 120.04473 * 179.69909 * 8 7 6 10 10 C 1.34781 * 119.99959 * 211.70546 * 9 8 7 11 11 O 1.21375 * 119.99709 * 5.58048 * 10 9 8 12 12 C 1.49355 * 119.99928 * 185.58503 * 10 9 8 13 13 O 1.21355 * 119.99876 * 359.97438 * 12 10 9 14 14 N 1.34766 * 119.99681 * 180.02562 * 12 10 9 15 15 C 1.46504 * 119.99833 * 179.97438 * 14 12 10 16 16 H 1.09001 * 109.47243 * 324.99787 * 15 14 12 17 17 C 1.50703 * 109.47124 * 204.99839 * 15 14 12 18 18 H 1.07991 * 120.00031 * 354.41659 * 17 15 14 19 19 C 1.37884 * 119.99871 * 174.42680 * 17 15 14 20 20 N 1.31509 * 119.99919 * 156.79728 * 19 17 15 21 21 Si 1.86807 * 119.99831 * 336.79324 * 19 17 15 22 22 H 1.48494 * 109.46944 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.46996 * 300.00530 * 21 19 17 24 24 H 1.48505 * 109.46949 * 60.00400 * 21 19 17 25 25 C 1.52998 * 109.47072 * 84.99764 * 15 14 12 26 26 C 1.53002 * 109.47155 * 294.25764 * 25 15 14 27 27 C 1.38556 * 120.02089 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46805 * 300.00270 * 1 2 3 30 30 H 1.09000 * 109.47146 * 59.99528 * 1 2 3 31 31 H 1.09003 * 109.47000 * 240.00243 * 2 1 3 32 32 H 1.09000 * 109.47146 * 120.00472 * 2 1 3 33 33 H 1.08001 * 119.95642 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.93517 * 179.97438 * 6 5 4 35 35 H 1.07999 * 119.98478 * 180.29915 * 7 6 5 36 36 H 0.97001 * 120.00037 * 31.70872 * 9 8 7 37 37 H 0.96999 * 120.00919 * 359.97438 * 14 12 10 38 38 H 0.96996 * 120.00281 * 354.92311 * 20 19 17 39 39 H 1.09000 * 109.47269 * 54.26045 * 25 15 14 40 40 H 1.09003 * 109.47076 * 174.25678 * 25 15 14 41 41 H 1.09005 * 109.47269 * 180.02562 * 26 25 15 42 42 H 1.09004 * 109.47256 * 299.99785 * 26 25 15 43 43 H 1.09003 * 109.47198 * 59.99989 * 26 25 15 44 44 H 1.07996 * 120.06759 * 0.04270 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1996 0.4246 -0.0016 6 6 5.5697 0.6038 -0.0016 7 6 6.1024 1.8785 -0.0072 8 6 5.2607 2.9839 -0.0004 9 7 5.7992 4.2732 0.0003 10 6 5.1455 5.2762 0.6194 11 8 4.1427 5.0417 1.2617 12 6 5.6551 6.6763 0.5151 13 8 6.6580 6.9107 -0.1268 14 7 5.0018 7.6790 1.1346 15 6 5.5019 9.0523 1.0327 16 1 6.5916 9.0413 1.0090 17 6 5.0333 9.8473 2.2241 18 1 4.3510 9.4043 2.9343 19 6 5.4757 11.1403 2.4073 20 7 4.7691 11.9806 3.1312 21 14 7.0787 11.6984 1.6272 22 1 7.3287 13.1206 1.9733 23 1 8.1947 10.8618 2.1368 24 1 6.9870 11.5562 0.1518 25 6 4.9704 9.6948 -0.2501 26 6 5.5614 8.9747 -1.4639 27 6 3.8836 2.8055 -0.0011 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7862 -0.5732 -0.0016 34 1 6.2254 -0.2544 -0.0020 35 1 7.1736 2.0158 -0.0121 36 1 6.6435 4.4465 -0.4448 37 1 4.2003 7.4917 1.6479 38 1 3.9020 11.7145 3.4749 39 1 3.8837 9.6143 -0.2735 40 1 5.2575 10.7460 -0.2759 41 1 5.1832 9.4327 -2.3779 42 1 6.6483 9.0553 -1.4405 43 1 5.2744 7.9235 -1.4381 44 1 3.2270 3.6630 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128500867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:34 Heat of formation + Delta-G solvation = -106.603366 kcal Electronic energy + Delta-G solvation = -26489.284878 eV Core-core repulsion = 22599.172005 eV Total energy + Delta-G solvation = -3890.112873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24625 -41.07730 -40.05169 -38.51483 -37.32747 -35.80137 -34.50434 -33.19466 -32.92348 -31.11068 -30.35495 -29.35374 -26.46886 -24.72782 -24.24827 -23.86366 -22.62398 -21.74519 -21.31450 -20.42468 -19.65238 -18.89885 -18.02021 -17.37293 -17.14878 -17.05005 -16.97876 -16.87028 -16.22533 -15.79100 -15.42968 -15.11125 -14.65603 -14.58509 -14.52460 -14.45281 -14.32068 -14.01238 -13.62280 -13.40468 -13.27369 -13.19565 -12.80788 -12.65126 -12.62576 -12.50953 -12.30191 -11.98197 -11.81230 -11.77547 -11.54486 -11.35853 -11.22437 -10.71246 -10.48440 -10.04803 -9.54207 -9.12582 -8.84946 -6.46430 -0.14023 0.40383 0.56677 1.21814 1.48241 1.51995 1.72240 2.04655 2.18509 2.43765 2.68213 2.75012 2.93066 3.37657 3.82838 4.03570 4.05462 4.11592 4.19741 4.27055 4.30134 4.35554 4.36433 4.46748 4.47493 4.54387 4.77043 4.85316 4.92138 5.05847 5.11325 5.13756 5.15916 5.18769 5.21483 5.29137 5.38661 5.42439 5.49355 5.59156 5.73181 5.92165 5.98223 6.41977 6.44390 6.47866 6.66129 6.94019 7.27466 8.53013 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.002679 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.668143 B =10448.442747 C =11096.622702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.341 6.341 4 C 0.135 3.865 5 C -0.218 4.218 6 C -0.051 4.051 7 C -0.175 4.175 8 C 0.166 3.834 9 N -0.632 5.632 10 C 0.512 3.488 11 O -0.521 6.521 12 C 0.501 3.499 13 O -0.536 6.536 14 N -0.670 5.670 15 C 0.253 3.747 16 H 0.039 0.961 17 C -0.630 4.630 18 H 0.036 0.964 19 C 0.004 3.996 20 N -0.917 5.917 21 Si 1.067 2.933 22 H -0.282 1.282 23 H -0.269 1.269 24 H -0.244 1.244 25 C -0.133 4.133 26 C -0.136 4.136 27 C -0.189 4.189 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.435 0.565 37 H 0.407 0.593 38 H 0.260 0.740 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -27.411 -10.420 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.255 6.255 4 C 0.089 3.911 5 C -0.237 4.237 6 C -0.070 4.070 7 C -0.196 4.196 8 C 0.072 3.928 9 N -0.279 5.279 10 C 0.294 3.706 11 O -0.396 6.396 12 C 0.281 3.719 13 O -0.415 6.415 14 N -0.319 5.319 15 C 0.149 3.851 16 H 0.057 0.943 17 C -0.667 4.667 18 H 0.054 0.946 19 C -0.198 4.198 20 N -0.550 5.550 21 Si 0.888 3.112 22 H -0.208 1.208 23 H -0.194 1.194 24 H -0.168 1.168 25 C -0.172 4.172 26 C -0.194 4.194 27 C -0.210 4.210 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.175 0.825 34 H 0.188 0.812 35 H 0.174 0.826 36 H 0.275 0.725 37 H 0.242 0.758 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.858 -25.887 -10.510 27.953 hybrid contribution -1.642 -0.840 0.799 2.010 sum -0.784 -26.728 -9.711 28.448 Atomic orbital electron populations 1.21833 0.91985 1.04275 1.02850 1.23120 0.96629 0.80393 1.02765 1.86081 1.18994 1.31955 1.88482 1.18840 0.83069 0.93534 0.95668 1.21585 0.94586 0.98330 1.09233 1.21190 0.94396 0.97150 0.94230 1.21169 1.00610 0.90868 1.06908 1.17598 0.91667 0.84035 0.99463 1.43057 1.25939 1.05905 1.53016 1.20413 0.84000 0.86743 0.79407 1.90779 1.25295 1.84241 1.39271 1.19883 0.84836 0.85903 0.81325 1.90717 1.25115 1.84314 1.41307 1.46069 1.29110 1.07797 1.48902 1.19003 0.94912 0.77082 0.94106 0.94304 1.22159 1.32947 1.00678 1.10941 0.94588 1.26882 1.04606 0.92612 0.95716 1.70958 1.12649 1.36371 1.35010 0.83771 0.72986 0.76361 0.78126 1.20786 1.19422 1.16807 1.22198 1.00155 0.99885 0.94993 1.21807 1.00769 0.99627 0.97149 1.20284 0.94367 0.96324 1.09991 0.87636 0.92522 0.92147 0.90214 0.90706 0.82513 0.81225 0.82627 0.72479 0.75820 0.93106 0.93076 0.91964 0.92181 0.92963 0.93723 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 71.98 0.74 -1.02 16 2 C 0.05 0.63 5.46 71.98 0.39 1.02 16 3 O -0.34 -8.19 10.13 -92.36 -0.94 -9.13 16 4 C 0.13 3.27 6.68 22.49 0.15 3.42 16 5 C -0.22 -3.61 9.04 22.40 0.20 -3.40 16 6 C -0.05 -0.71 10.03 22.24 0.22 -0.49 16 7 C -0.18 -3.08 9.96 22.42 0.22 -2.85 16 8 C 0.17 4.18 6.30 38.20 0.24 4.42 16 9 N -0.63 -16.63 5.33 -304.87 -1.62 -18.26 16 10 C 0.51 17.22 7.63 87.24 0.67 17.89 16 11 O -0.52 -19.97 14.08 -3.32 -0.05 -20.02 16 12 C 0.50 18.78 6.49 87.24 0.57 19.35 16 13 O -0.54 -20.58 13.63 -3.26 -0.04 -20.63 16 14 N -0.67 -28.04 5.02 -447.54 -2.25 -30.29 16 15 C 0.25 11.82 1.83 44.24 0.08 11.90 16 16 H 0.04 1.89 6.15 -2.39 -0.01 1.88 16 17 C -0.63 -34.51 8.95 25.60 0.23 -34.28 16 18 H 0.04 2.14 7.96 -2.92 -0.02 2.11 16 19 C 0.00 0.23 5.20 84.66 0.44 0.67 16 20 N -0.92 -55.17 13.70 21.45 0.29 -54.87 16 21 Si 1.07 48.57 26.45 68.60 1.81 50.38 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.24 -9.98 6.12 99.48 0.61 -9.37 16 25 C -0.13 -5.71 5.33 30.59 0.16 -5.55 16 26 C -0.14 -4.99 8.53 71.98 0.61 -4.38 16 27 C -0.19 -5.49 8.60 22.49 0.19 -5.29 16 28 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.80 7.66 -2.39 -0.02 0.78 16 32 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 33 H 0.16 1.59 6.29 -2.91 -0.02 1.57 16 34 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.43 9.36 8.29 -92.71 -0.77 8.59 16 37 H 0.41 16.94 7.99 -92.71 -0.74 16.20 16 38 H 0.26 15.78 8.73 -92.71 -0.81 14.97 16 39 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 2.74 5.45 -2.39 -0.01 2.72 16 41 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.05 1.93 7.89 -2.38 -0.02 1.91 16 43 H 0.04 1.63 5.63 -2.39 -0.01 1.61 16 44 H 0.11 3.92 6.32 -2.91 -0.02 3.90 16 Total: -1.00 -69.60 361.84 1.74 -67.86 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.60 Total: 33.56 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.13 Total: 1.39 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -3.58 Total: -103.43 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -1.03 Total: -49.77 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 1.81 Total: 50.38 kcal Total: -69.60 1.74 -67.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128500867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.740 kcal (2) G-P(sol) polarization free energy of solvation -69.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds