Wall clock time and date at job start Tue Mar 31 2020 12:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 H 1.08998 * 109.47109 * 304.99691 * 3 2 1 5 5 C 1.50699 * 109.46911 * 184.99643 * 3 2 1 6 6 H 1.08002 * 120.00093 * 239.99867 * 5 3 2 7 7 C 1.37880 * 120.00069 * 60.00614 * 5 3 2 8 8 N 1.31515 * 119.99744 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00135 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47442 * 89.99632 * 9 7 5 11 11 H 1.48506 * 109.47106 * 209.99933 * 9 7 5 12 12 H 1.48500 * 109.47084 * 329.99104 * 9 7 5 13 13 N 1.46500 * 109.47026 * 64.99756 * 3 2 1 14 14 C 1.34778 * 120.00293 * 275.00058 * 13 3 2 15 15 O 1.21585 * 119.99382 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99903 * 179.97438 * 14 13 3 17 17 C 1.39981 * 119.99608 * 174.37968 * 16 14 13 18 18 C 1.38617 * 119.99626 * 335.16830 * 17 16 14 19 19 C 1.39512 * 119.77349 * 179.97438 * 18 17 16 20 20 C 1.47745 * 120.11832 * 180.02562 * 19 18 17 21 21 O 1.21469 * 119.99867 * 0.02562 * 20 19 18 22 22 O 1.34707 * 120.00001 * 180.02562 * 20 19 18 23 23 C 1.45201 * 116.99837 * 180.02562 * 22 20 19 24 24 C 1.39664 * 119.76787 * 0.02562 * 19 18 17 25 25 C 1.37966 * 119.98766 * 0.02562 * 24 19 18 26 26 C 1.38267 * 120.23054 * 359.74499 * 25 24 19 27 27 C 1.50699 * 119.88828 * 180.25797 * 26 25 24 28 28 H 1.08997 * 109.47655 * 299.99982 * 1 2 3 29 29 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47061 * 60.00367 * 1 2 3 31 31 H 1.09002 * 109.46706 * 119.99947 * 2 1 3 32 32 H 1.08997 * 109.47393 * 239.99535 * 2 1 3 33 33 H 0.97004 * 120.00096 * 180.02562 * 8 7 5 34 34 H 0.97004 * 119.99715 * 94.99956 * 13 3 2 35 35 H 0.96995 * 120.00431 * 354.38575 * 16 14 13 36 36 H 1.08000 * 120.11325 * 359.95413 * 18 17 16 37 37 H 1.09004 * 109.46987 * 180.02562 * 23 22 20 38 38 H 1.09003 * 109.46853 * 299.99976 * 23 22 20 39 39 H 1.08997 * 109.47216 * 60.00117 * 23 22 20 40 40 H 1.07994 * 120.00847 * 180.02562 * 24 19 18 41 41 H 1.08001 * 119.88766 * 179.97438 * 25 24 19 42 42 H 1.08995 * 109.46934 * 270.25828 * 27 26 25 43 43 H 1.09004 * 109.46968 * 30.25077 * 27 26 25 44 44 H 1.08999 * 109.47521 * 150.25246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3817 10 1 6.5548 -0.3502 -0.7601 11 1 6.3830 0.9224 -2.8172 12 1 6.5569 2.0738 -0.6901 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3416 2.6318 0.4320 16 7 0.0783 3.2665 2.5188 17 6 -1.1368 3.9566 2.6005 18 6 -1.7212 4.4693 1.4529 19 6 -2.9326 5.1559 1.5397 20 6 -3.5625 5.7049 0.3213 21 8 -3.0259 5.5585 -0.7586 22 8 -4.7319 6.3679 0.4079 23 6 -5.2929 6.8794 -0.8298 24 6 -3.5477 5.3224 2.7825 25 6 -2.9569 4.8091 3.9186 26 6 -1.7587 4.1246 3.8317 27 6 -1.1231 3.5621 5.0769 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.8293 -0.0618 -2.9495 34 1 2.2719 2.1231 1.9978 35 1 0.6635 3.2216 3.2910 36 1 -1.2403 4.3379 0.4948 37 1 -6.2321 7.3910 -0.6190 38 1 -4.5921 7.5797 -1.2843 39 1 -5.4756 6.0518 -1.5153 40 1 -4.4856 5.8529 2.8541 41 1 -3.4338 4.9392 4.8789 42 1 -0.4607 4.3082 5.5155 43 1 -1.9003 3.2995 5.7947 44 1 -0.5488 2.6716 4.8213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155555711.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:17 Heat of formation + Delta-G solvation = -110.708681 kcal Electronic energy + Delta-G solvation = -27044.568293 eV Core-core repulsion = 23154.277400 eV Total energy + Delta-G solvation = -3890.290893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.00247 -41.35063 -39.79607 -37.56589 -37.21334 -35.82962 -34.35454 -33.73414 -32.77966 -30.66766 -29.47377 -28.81640 -27.64649 -25.21118 -24.28480 -23.72686 -22.25844 -21.74122 -21.38123 -19.79014 -19.41495 -18.31772 -17.92488 -17.44412 -17.42727 -16.83841 -16.66188 -16.22809 -15.99467 -15.71657 -15.09180 -14.86566 -14.74533 -14.55154 -14.43187 -14.37349 -14.04814 -13.55716 -13.38836 -13.19167 -13.01803 -12.95219 -12.89187 -12.68763 -12.65360 -12.42594 -12.14947 -12.07615 -11.87389 -11.76052 -11.64073 -11.46708 -11.08537 -10.91923 -10.55123 -9.83069 -9.74109 -8.98725 -8.16602 -6.34189 -0.36720 0.35868 1.40862 1.44347 1.45554 1.54715 1.57479 1.79333 2.19744 2.41790 2.81496 3.13011 3.42068 3.66683 3.86308 3.96388 4.19072 4.28654 4.28983 4.29895 4.44737 4.47370 4.55217 4.65443 4.72409 4.76714 4.88000 4.92213 5.03453 5.08171 5.20645 5.26647 5.28426 5.33876 5.41558 5.42325 5.49867 5.53219 5.59978 5.74392 5.86088 5.96499 6.15489 6.25103 6.63582 6.73902 7.21861 7.34206 7.68480 8.88973 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.003272 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.469588 B = 8556.642543 C = 9636.831410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.296 3.704 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.712 5.712 14 C 0.688 3.312 15 O -0.610 6.610 16 N -0.671 5.671 17 C 0.148 3.852 18 C -0.098 4.098 19 C -0.136 4.136 20 C 0.506 3.494 21 O -0.546 6.546 22 O -0.348 6.348 23 C 0.028 3.972 24 C -0.073 4.073 25 C -0.101 4.101 26 C -0.075 4.075 27 C -0.119 4.119 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.020 0.980 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.423 0.577 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.164 0.836 41 H 0.181 0.819 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 10.514 18.128 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.192 3.808 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.364 5.364 14 C 0.388 3.612 15 O -0.490 6.490 16 N -0.320 5.320 17 C 0.052 3.948 18 C -0.119 4.119 19 C -0.138 4.138 20 C 0.353 3.647 21 O -0.438 6.438 22 O -0.264 6.264 23 C -0.065 4.065 24 C -0.092 4.092 25 C -0.119 4.119 26 C -0.079 4.079 27 C -0.175 4.175 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.262 0.738 36 H 0.133 0.867 37 H 0.163 0.837 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.181 0.819 41 H 0.198 0.802 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.261 10.312 16.720 24.275 hybrid contribution 1.541 -0.192 -0.925 1.808 sum -12.720 10.120 15.794 22.664 Atomic orbital electron populations 1.21639 0.97265 0.98863 0.99992 1.21792 0.93422 0.99191 1.01450 1.18277 0.93576 0.88830 0.80086 0.98747 1.21552 0.91147 1.38999 1.06815 0.90792 1.25792 1.03428 0.94394 0.94963 1.70063 1.37123 1.38275 1.09891 0.85336 0.78935 0.78921 0.77072 1.19457 1.21484 1.18888 1.45432 1.13654 1.58824 1.18519 1.16276 0.83095 0.78753 0.83037 1.90907 1.52616 1.65263 1.40253 1.42496 1.20860 1.54618 1.14035 1.17392 0.87662 0.95811 0.93972 1.21364 0.95493 0.95450 0.99591 1.18954 0.96994 1.05424 0.92405 1.21591 0.79239 0.74847 0.89032 1.90866 1.64214 1.57092 1.31585 1.86504 1.35306 1.65850 1.38739 1.23613 1.00054 0.99135 0.83714 1.21646 1.00157 0.97591 0.89771 1.21289 0.93906 0.96802 0.99884 1.20300 0.95290 0.98684 0.93590 1.20935 1.02198 1.01140 0.93214 0.93968 0.93681 0.96119 0.93656 0.90956 0.92612 0.76176 0.73783 0.86676 0.83716 0.92233 0.92566 0.81851 0.80206 0.88500 0.88214 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.82 16 3 C 0.30 15.41 2.24 44.24 0.10 15.51 16 4 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 5 C -0.55 -28.97 8.73 25.60 0.22 -28.74 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -53.13 11.29 21.45 0.24 -52.89 16 9 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.71 -29.43 5.03 -461.42 -2.32 -31.75 16 14 C 0.69 28.24 6.93 179.05 1.24 29.48 16 15 O -0.61 -30.96 10.64 -3.98 -0.04 -31.01 16 16 N -0.67 -19.91 4.97 -317.28 -1.58 -21.48 16 17 C 0.15 4.33 6.41 38.10 0.24 4.57 16 18 C -0.10 -3.57 8.26 22.67 0.19 -3.38 16 19 C -0.14 -4.14 5.87 -20.11 -0.12 -4.26 16 20 C 0.51 16.69 7.90 70.34 0.56 17.25 16 21 O -0.55 -22.96 16.13 19.94 0.32 -22.64 16 22 O -0.35 -8.51 9.81 -56.17 -0.55 -9.06 16 23 C 0.03 0.51 10.56 113.37 1.20 1.71 16 24 C -0.07 -1.45 9.61 22.55 0.22 -1.23 16 25 C -0.10 -1.54 9.67 22.21 0.21 -1.33 16 26 C -0.08 -1.44 5.90 -19.69 -0.12 -1.56 16 27 C -0.12 -1.31 9.44 71.24 0.67 -0.64 16 28 H 0.04 1.93 5.64 -2.39 -0.01 1.92 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.02 1.05 7.84 -2.39 -0.02 1.04 16 31 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 4.06 5.95 -2.39 -0.01 4.04 16 33 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.40 13.59 8.56 -92.71 -0.79 12.79 16 35 H 0.42 8.84 7.41 -92.71 -0.69 8.16 16 36 H 0.12 5.45 5.38 -2.91 -0.02 5.43 16 37 H 0.14 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.16 2.29 7.61 -2.91 -0.02 2.26 16 41 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 0.67 8.09 -2.39 -0.02 0.65 16 44 H 0.06 0.81 6.97 -2.39 -0.02 0.79 16 Total: -1.00 -79.64 363.48 3.51 -76.12 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.43 Total: 30.68 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.85 Total: 17.71 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.65 Total: -106.12 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -0.27 Total: -62.71 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -79.64 3.51 -76.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155555711.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.587 kcal (2) G-P(sol) polarization free energy of solvation -79.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds