Wall clock time and date at job start Tue Mar 31 2020 12:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45209 * 109.47315 * 2 1 4 4 C 1.34750 * 116.99838 * 179.97438 * 3 2 1 5 5 O 1.21506 * 119.99983 * 0.02562 * 4 3 2 6 6 C 1.47448 * 119.99447 * 179.97438 * 4 3 2 7 7 C 1.39818 * 120.07406 * 180.02562 * 6 4 3 8 8 C 1.37637 * 119.91833 * 180.02562 * 7 6 4 9 9 C 1.39153 * 120.07877 * 359.97438 * 8 7 6 10 10 N 1.39407 * 119.92110 * 179.97438 * 9 8 7 11 11 C 1.34769 * 120.00204 * 146.58395 * 10 9 8 12 12 O 1.21584 * 119.99853 * 354.67997 * 11 10 9 13 13 N 1.34773 * 120.00391 * 174.68570 * 11 10 9 14 14 C 1.46501 * 120.00674 * 179.71693 * 13 11 10 15 15 H 1.09007 * 109.46918 * 325.28143 * 14 13 11 16 16 C 1.50689 * 109.47658 * 205.27394 * 14 13 11 17 17 H 1.08001 * 119.99898 * 0.02562 * 16 14 13 18 18 C 1.37879 * 120.00424 * 179.97438 * 16 14 13 19 19 N 1.31521 * 119.99400 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00306 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47439 * 60.00308 * 20 18 16 22 22 H 1.48510 * 109.47114 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47337 * 299.99836 * 20 18 16 24 24 C 1.53009 * 109.46808 * 85.27260 * 14 13 11 25 25 C 1.52999 * 109.47290 * 295.00488 * 24 14 13 26 26 C 1.39153 * 120.15874 * 0.25754 * 9 8 7 27 27 C 1.37639 * 120.07930 * 359.48878 * 26 9 8 28 28 H 1.08994 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46901 * 300.00073 * 1 2 3 30 30 H 1.09003 * 109.46998 * 59.99458 * 1 2 3 31 31 H 1.08999 * 109.47420 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47446 * 119.99913 * 2 1 3 33 33 H 1.08002 * 120.04328 * 0.02562 * 7 6 4 34 34 H 1.08000 * 119.96329 * 179.97438 * 8 7 6 35 35 H 0.96996 * 119.99365 * 326.57615 * 10 9 8 36 36 H 0.97008 * 119.99786 * 0.02562 * 13 11 10 37 37 H 0.97002 * 119.99807 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.46499 * 55.00606 * 24 14 13 39 39 H 1.08994 * 109.47051 * 175.00195 * 24 14 13 40 40 H 1.09007 * 109.47063 * 59.99865 * 25 24 14 41 41 H 1.08994 * 109.47251 * 179.97438 * 25 24 14 42 42 H 1.08999 * 109.46902 * 300.00073 * 25 24 14 43 43 H 1.08006 * 119.95841 * 179.72123 * 26 9 8 44 44 H 1.07998 * 120.03912 * 180.23211 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0900 0.5819 0.0005 6 6 3.9135 2.9080 0.0000 7 6 5.2993 3.0931 0.0000 8 6 5.8219 4.3664 0.0000 9 6 4.9727 5.4688 -0.0005 10 7 5.5056 6.7570 0.0001 11 6 4.8634 7.7522 -0.6430 12 8 3.8724 7.5088 -1.3039 13 7 5.3199 9.0171 -0.5537 14 6 4.6255 10.0980 -1.2578 15 1 4.2296 9.7216 -2.2011 16 6 5.5916 11.2217 -1.5310 17 1 6.6202 11.1389 -1.2124 18 6 5.1628 12.3551 -2.1886 19 7 3.9102 12.4557 -2.5770 20 14 6.3606 13.7477 -2.5278 21 1 7.4774 13.2464 -3.3684 22 1 5.6565 14.8434 -3.2415 23 1 6.8998 14.2610 -1.2429 24 6 3.4746 10.6141 -0.3916 25 6 2.4315 9.5084 -0.2178 26 6 3.5930 5.2884 0.0044 27 6 3.0633 4.0180 -0.0009 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.9590 2.2380 0.0000 34 1 6.8923 4.5102 0.0005 35 1 6.3384 6.9370 0.4635 36 1 6.1109 9.2112 -0.0267 37 1 3.6086 13.2529 -3.0400 38 1 3.8587 10.9081 0.5852 39 1 3.0140 11.4754 -0.8751 40 1 2.8922 8.6469 0.2658 41 1 1.6119 9.8759 0.3996 42 1 2.0475 9.2144 -1.1946 43 1 2.9369 6.1463 0.0085 44 1 1.9924 3.8788 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155713984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:07 Heat of formation + Delta-G solvation = -94.976643 kcal Electronic energy + Delta-G solvation = -26242.323502 eV Core-core repulsion = 22352.714802 eV Total energy + Delta-G solvation = -3889.608700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.75403 -40.17154 -38.42739 -36.68318 -35.52278 -34.34624 -32.53033 -32.05179 -31.08674 -31.01760 -29.55383 -26.99523 -24.71871 -23.28977 -22.91066 -22.73532 -21.33979 -20.50696 -19.60671 -18.36496 -18.08686 -17.63807 -16.86311 -16.69394 -16.07328 -15.37535 -15.14483 -14.60094 -14.51071 -14.37405 -14.21661 -13.76677 -13.57381 -13.44946 -13.06781 -12.84253 -12.74596 -12.54320 -12.29022 -12.10876 -11.86767 -11.62525 -11.30799 -11.29047 -11.04531 -10.88387 -10.74932 -10.63538 -10.40815 -10.30345 -10.16955 -9.69173 -9.50608 -9.12839 -9.02151 -8.56419 -8.21002 -7.85211 -6.18031 -4.27805 0.65630 1.36790 2.45632 2.50736 3.02184 3.21844 3.27825 3.29199 3.56368 3.92942 4.27212 4.55817 4.65359 4.71023 4.73176 4.86884 4.90629 4.98235 5.13785 5.24349 5.31340 5.43580 5.48731 5.53460 5.68152 5.94569 6.06973 6.25737 6.28289 6.30503 6.34578 6.41359 6.50356 6.59825 6.91162 6.98603 7.04584 7.25588 7.29041 7.35119 7.58017 7.65583 7.78379 7.88678 8.11940 8.63195 8.74741 9.11499 9.39903 10.87256 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.002344 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.648566 B =11942.046242 C =12643.054399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.516 3.484 5 O -0.518 6.518 6 C -0.167 4.167 7 C -0.029 4.029 8 C -0.174 4.174 9 C 0.228 3.772 10 N -0.695 5.695 11 C 0.690 3.310 12 O -0.570 6.570 13 N -0.715 5.715 14 C 0.286 3.714 15 H 0.051 0.949 16 C -0.537 4.537 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.881 5.881 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.036 4.036 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.405 0.595 36 H 0.387 0.613 37 H 0.266 0.734 38 H 0.031 0.969 39 H 0.100 0.900 40 H 0.037 0.963 41 H 0.023 0.977 42 H 0.050 0.950 43 H 0.149 0.851 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -18.500 7.914 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.363 3.637 5 O -0.408 6.408 6 C -0.169 4.169 7 C -0.048 4.048 8 C -0.195 4.195 9 C 0.129 3.871 10 N -0.342 5.342 11 C 0.391 3.609 12 O -0.447 6.447 13 N -0.366 5.366 14 C 0.184 3.816 15 H 0.069 0.931 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.518 5.518 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.168 4.168 25 C -0.193 4.193 26 C -0.161 4.161 27 C -0.055 4.055 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.241 0.759 36 H 0.219 0.781 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.118 0.882 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.166 0.834 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.139 -18.707 7.168 20.147 hybrid contribution 1.489 0.828 0.246 1.721 sum -0.651 -17.879 7.414 19.366 Atomic orbital electron populations 1.21813 0.92556 1.02931 1.03738 1.23016 0.95373 0.80137 1.02552 1.86571 1.24026 1.32226 1.84318 1.21148 0.80381 0.89944 0.72244 1.90810 1.60411 1.42640 1.46945 1.18953 0.94001 0.89705 1.14241 1.20917 0.93122 0.97067 0.93718 1.20790 0.99776 0.90960 1.07949 1.17853 0.92617 0.83772 0.92872 1.42957 1.27831 1.06909 1.56484 1.16132 0.83381 0.81080 0.80313 1.90928 1.26670 1.82395 1.44696 1.45885 1.31993 1.05456 1.53251 1.18759 0.89859 0.82061 0.90912 0.93118 1.21165 0.95993 1.01396 1.38965 0.92130 1.24877 0.95404 0.98270 0.95075 1.69881 1.14864 1.28779 1.38272 0.86494 0.80792 0.81248 0.78474 1.20187 1.21097 1.20167 1.21959 0.96585 0.99440 0.98773 1.21827 0.98230 0.98784 1.00509 1.21295 0.94071 0.98174 1.02522 1.21304 1.00101 0.90904 0.93237 0.90267 0.91387 0.91311 0.91233 0.91270 0.84518 0.84842 0.75923 0.78106 0.92411 0.95017 0.88174 0.94436 0.95834 0.93045 0.83386 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.55 6.20 37.16 0.23 0.78 16 3 O -0.35 -4.11 9.46 -40.63 -0.38 -4.50 16 4 C 0.52 6.78 7.89 34.48 0.27 7.06 16 5 O -0.52 -7.70 16.13 -19.27 -0.31 -8.01 16 6 C -0.17 -2.13 5.87 -104.97 -0.62 -2.75 16 7 C -0.03 -0.34 9.58 -39.21 -0.38 -0.72 16 8 C -0.17 -1.97 9.94 -39.46 -0.39 -2.37 16 9 C 0.23 3.11 6.27 -83.74 -0.53 2.58 16 10 N -0.70 -9.57 5.32 -14.22 -0.08 -9.65 16 11 C 0.69 12.70 6.86 -86.93 -0.60 12.10 16 12 O -0.57 -12.40 11.18 5.29 0.06 -12.34 16 13 N -0.72 -13.68 5.02 -59.81 -0.30 -13.98 16 14 C 0.29 6.82 2.24 -69.08 -0.15 6.67 16 15 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 16 C -0.54 -13.57 8.73 -34.44 -0.30 -13.87 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 19 N -0.88 -23.95 11.29 55.43 0.63 -23.32 16 20 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 25 C -0.14 -2.88 8.52 37.16 0.32 -2.57 16 26 C -0.14 -2.03 8.62 -39.46 -0.34 -2.37 16 27 C -0.04 -0.47 9.60 -39.21 -0.38 -0.84 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.14 1.44 7.64 -52.49 -0.40 1.04 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.41 4.14 8.83 -40.82 -0.36 3.78 16 36 H 0.39 6.28 8.56 -40.82 -0.35 5.93 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 40 H 0.04 0.76 5.66 -51.93 -0.29 0.47 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 43 H 0.15 2.43 6.42 -52.48 -0.34 2.09 16 44 H 0.14 1.56 7.60 -52.49 -0.40 1.16 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -30.64 367.80 -8.75 -39.39 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.17 Total: 10.19 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.72 Total: 1.66 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.25 Total: -46.95 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.64 Total: -24.85 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.64 -8.75 -39.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155713984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.582 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds