Wall clock time and date at job start Tue Mar 31 2020 12:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47739 * 2 1 4 4 C 1.34704 * 117.00448 * 179.97438 * 3 2 1 5 5 O 1.21471 * 119.99747 * 0.02562 * 4 3 2 6 6 C 1.47738 * 120.00144 * 180.02562 * 4 3 2 7 7 C 1.39662 * 120.11278 * 359.73145 * 6 4 3 8 8 C 1.37973 * 119.98717 * 179.76167 * 7 6 4 9 9 C 1.38264 * 120.22326 * 0.49045 * 8 7 6 10 10 C 1.38947 * 120.23824 * 359.76371 * 9 8 7 11 11 N 1.39976 * 119.99706 * 179.97438 * 10 9 8 12 12 C 1.34787 * 119.99971 * 213.35306 * 11 10 9 13 13 O 1.21587 * 119.99476 * 5.31452 * 12 11 10 14 14 N 1.34777 * 119.99767 * 185.31246 * 12 11 10 15 15 C 1.46497 * 119.99574 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.47487 * 325.00201 * 15 14 12 17 17 C 1.50703 * 109.47135 * 205.00123 * 15 14 12 18 18 H 1.08001 * 119.99485 * 0.02562 * 17 15 14 19 19 C 1.37878 * 119.99979 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00013 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 119.99848 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47384 * 90.00331 * 21 19 17 23 23 H 1.48509 * 109.46755 * 210.00248 * 21 19 17 24 24 H 1.48504 * 109.47010 * 329.99733 * 21 19 17 25 25 C 1.52998 * 109.47220 * 85.00425 * 15 14 12 26 26 C 1.53011 * 109.46978 * 295.00011 * 25 15 14 27 27 C 1.38611 * 120.00793 * 0.02562 * 10 9 8 28 28 H 1.09001 * 109.46640 * 299.99695 * 1 2 3 29 29 H 1.09002 * 109.47094 * 59.99560 * 1 2 3 30 30 H 1.08997 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47291 * 120.00865 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00402 * 2 1 3 33 33 H 1.07996 * 120.01054 * 359.97438 * 7 6 4 34 34 H 1.07998 * 119.88661 * 180.23384 * 8 7 6 35 35 H 1.08008 * 119.87946 * 179.74578 * 9 8 7 36 36 H 0.97000 * 120.00180 * 33.34977 * 11 10 9 37 37 H 0.96995 * 120.00279 * 359.97438 * 14 12 11 38 38 H 0.97002 * 120.00188 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.47115 * 54.99571 * 25 15 14 40 40 H 1.08995 * 109.47555 * 174.99893 * 25 15 14 41 41 H 1.09000 * 109.46838 * 299.99730 * 26 25 15 42 42 H 1.08995 * 109.47073 * 59.99587 * 26 25 15 43 43 H 1.09001 * 109.47096 * 179.97438 * 26 25 15 44 44 H 1.07994 * 120.11716 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0894 0.5820 0.0005 6 6 3.9143 2.9106 0.0011 7 6 3.0658 4.0199 -0.0045 8 6 3.5960 5.2937 0.0011 9 6 4.9664 5.4771 0.0020 10 6 5.8192 4.3801 0.0023 11 7 7.2058 4.5717 0.0027 12 6 8.0070 3.6980 -0.6388 13 8 7.5216 2.7991 -1.2981 14 7 9.3462 3.8210 -0.5495 15 6 10.2170 2.8711 -1.2463 16 1 9.7563 1.8832 -1.2393 17 6 11.5514 2.8080 -0.5489 18 1 11.7325 3.4145 0.3262 19 6 12.5407 1.9752 -1.0273 20 7 12.3199 1.2363 -2.0926 21 14 14.1944 1.8965 -0.1623 22 1 14.1570 0.8420 0.8824 23 1 15.2554 1.5764 -1.1510 24 1 14.4858 3.2087 0.4690 25 6 10.4184 3.3296 -2.6920 26 6 9.0822 3.2744 -3.4355 27 6 5.2971 3.0961 0.0011 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.9949 3.8807 -0.0097 34 1 2.9383 6.1503 0.0005 35 1 5.3755 6.4767 0.0022 36 1 7.5901 5.3332 0.4645 37 1 9.7334 4.5384 -0.0240 38 1 13.0157 0.6501 -2.4289 39 1 10.7963 4.3520 -2.6996 40 1 11.1358 2.6734 -3.1848 41 1 8.7043 2.2520 -3.4279 42 1 8.3649 3.9306 -2.9427 43 1 9.2256 3.6015 -4.4653 44 1 5.9583 2.2423 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157130764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:19 Heat of formation + Delta-G solvation = -92.196345 kcal Electronic energy + Delta-G solvation = -26618.932496 eV Core-core repulsion = 22729.444359 eV Total energy + Delta-G solvation = -3889.488138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.70580 -40.01143 -38.40558 -36.57386 -35.48486 -34.24813 -32.46057 -32.06298 -31.09599 -30.97168 -29.24523 -26.83853 -25.00843 -23.38840 -22.92641 -22.54417 -21.02227 -20.61921 -19.52762 -18.27235 -18.20554 -17.13928 -16.61799 -16.31310 -16.00945 -15.67419 -15.33498 -14.88506 -14.48245 -14.30599 -14.11363 -13.78604 -13.53565 -13.27821 -13.01139 -12.92338 -12.66053 -12.24975 -12.03476 -11.94202 -11.87796 -11.57535 -11.49951 -11.25734 -10.96387 -10.86275 -10.66242 -10.51815 -10.32863 -10.20822 -10.17605 -9.61552 -9.43764 -9.07419 -9.01679 -8.51256 -8.11995 -7.77335 -6.13000 -4.22567 0.68366 1.35793 2.51143 2.53955 3.12395 3.24453 3.31482 3.33169 3.62220 3.98531 4.31407 4.53704 4.71787 4.76906 4.78149 4.91590 5.04600 5.06751 5.13755 5.18759 5.33617 5.41718 5.53167 5.56113 5.70599 5.83360 6.16457 6.25714 6.31999 6.39951 6.41388 6.48371 6.51153 6.67102 6.99243 7.02742 7.11848 7.32830 7.37044 7.44193 7.63618 7.75982 7.85409 7.95701 8.17794 8.71037 8.81928 9.21216 9.45379 10.92406 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.002849 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.945414 B = 9826.716492 C =10664.497997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.508 3.492 5 O -0.495 6.495 6 C -0.108 4.108 7 C -0.092 4.092 8 C -0.113 4.113 9 C -0.122 4.122 10 C 0.175 3.825 11 N -0.697 5.697 12 C 0.690 3.310 13 O -0.571 6.571 14 N -0.716 5.716 15 C 0.285 3.715 16 H 0.051 0.949 17 C -0.535 4.535 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.881 5.881 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.057 4.057 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.404 0.596 37 H 0.386 0.614 38 H 0.265 0.735 39 H 0.030 0.970 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.021 0.979 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.272 7.396 5.389 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.353 3.647 5 O -0.383 6.383 6 C -0.110 4.110 7 C -0.111 4.111 8 C -0.132 4.132 9 C -0.144 4.144 10 C 0.078 3.922 11 N -0.345 5.345 12 C 0.390 3.610 13 O -0.447 6.447 14 N -0.367 5.367 15 C 0.184 3.816 16 H 0.069 0.931 17 C -0.573 4.573 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.518 5.518 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.167 4.167 26 C -0.193 4.193 27 C -0.078 4.078 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.239 0.761 37 H 0.218 0.782 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.255 6.033 4.623 21.635 hybrid contribution 1.373 0.525 0.812 1.679 sum -18.883 6.559 5.434 20.715 Atomic orbital electron populations 1.21800 0.92607 1.02950 1.03459 1.23034 0.95223 0.80140 1.02871 1.86515 1.23955 1.32320 1.84599 1.21184 0.80454 0.90034 0.73066 1.90890 1.60238 1.42344 1.44831 1.18891 0.93424 0.89918 1.08724 1.21307 0.99921 0.91554 0.98358 1.20845 0.94327 0.96996 1.01015 1.21141 0.93426 0.97897 1.01918 1.17322 0.82872 0.92974 0.99039 1.42907 1.03922 1.30418 1.57279 1.16157 0.82438 0.82277 0.80123 1.90947 1.74316 1.34879 1.44604 1.45844 1.02975 1.34394 1.53513 1.18753 0.87242 0.87629 0.88014 0.93107 1.21203 0.97400 1.25772 1.12930 0.92086 1.24879 0.98828 0.95019 0.94940 1.69897 1.34037 1.25553 1.22327 0.86442 0.82957 0.78409 0.79242 1.20558 1.21059 1.19891 1.21958 0.96548 1.00028 0.98180 1.21820 0.98735 1.01352 0.97404 1.21404 0.93546 0.97923 0.94951 0.91505 0.91457 0.90242 0.91143 0.91058 0.84752 0.85027 0.85204 0.76075 0.78188 0.92505 0.95087 0.88230 0.93088 0.94356 0.95970 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.62 16 2 C 0.06 0.61 6.19 37.16 0.23 0.84 16 3 O -0.36 -4.44 9.47 -40.50 -0.38 -4.82 16 4 C 0.51 7.85 7.90 34.61 0.27 8.12 16 5 O -0.50 -9.35 16.13 -19.24 -0.31 -9.66 16 6 C -0.11 -1.57 5.87 -105.01 -0.62 -2.19 16 7 C -0.09 -1.02 9.61 -39.15 -0.38 -1.40 16 8 C -0.11 -1.08 10.02 -39.67 -0.40 -1.48 16 9 C -0.12 -1.32 9.95 -39.31 -0.39 -1.71 16 10 C 0.17 2.52 6.27 -83.74 -0.53 1.99 16 11 N -0.70 -10.23 5.35 -14.26 -0.08 -10.31 16 12 C 0.69 13.56 6.87 -86.91 -0.60 12.96 16 13 O -0.57 -13.42 11.16 5.29 0.06 -13.37 16 14 N -0.72 -14.46 5.03 -59.81 -0.30 -14.76 16 15 C 0.29 7.12 2.24 -69.08 -0.15 6.96 16 16 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 17 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 20 N -0.88 -24.68 11.29 55.43 0.63 -24.05 16 21 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 26 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 27 C -0.06 -0.96 8.20 -38.97 -0.32 -1.28 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.13 1.20 7.61 -52.49 -0.40 0.80 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.40 4.38 8.83 -40.82 -0.36 4.02 16 37 H 0.39 6.60 8.56 -40.82 -0.35 6.25 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 41 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 42 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.16 3.16 6.00 -52.49 -0.32 2.84 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -32.76 367.86 -8.75 -41.51 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.17 Total: 10.77 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.72 Total: 3.61 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.25 Total: -49.12 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.63 Total: -27.84 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.76 -8.75 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157130764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.687 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds