Wall clock time and date at job start Tue Mar 31 2020 12:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47739 * 2 1 4 4 C 1.34704 * 117.00448 * 179.97438 * 3 2 1 5 5 O 1.21471 * 119.99747 * 0.02562 * 4 3 2 6 6 C 1.47738 * 120.00144 * 180.02562 * 4 3 2 7 7 C 1.39662 * 120.11278 * 359.73145 * 6 4 3 8 8 C 1.37973 * 119.98717 * 179.76167 * 7 6 4 9 9 C 1.38264 * 120.22326 * 0.49045 * 8 7 6 10 10 C 1.38947 * 120.23824 * 359.76371 * 9 8 7 11 11 N 1.39976 * 119.99706 * 179.97438 * 10 9 8 12 12 C 1.34787 * 119.99971 * 213.35306 * 11 10 9 13 13 O 1.21587 * 119.99476 * 5.31452 * 12 11 10 14 14 N 1.34777 * 119.99767 * 185.31246 * 12 11 10 15 15 C 1.46497 * 119.99574 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.47487 * 325.00201 * 15 14 12 17 17 C 1.50703 * 109.47135 * 205.00123 * 15 14 12 18 18 H 1.08001 * 119.99485 * 0.02562 * 17 15 14 19 19 C 1.37878 * 119.99979 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00013 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 119.99848 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47384 * 90.00331 * 21 19 17 23 23 H 1.48509 * 109.46755 * 210.00248 * 21 19 17 24 24 H 1.48504 * 109.47010 * 329.99733 * 21 19 17 25 25 C 1.52998 * 109.47220 * 85.00425 * 15 14 12 26 26 C 1.53011 * 109.46978 * 295.00011 * 25 15 14 27 27 C 1.38611 * 120.00793 * 0.02562 * 10 9 8 28 28 H 1.09001 * 109.46640 * 299.99695 * 1 2 3 29 29 H 1.09002 * 109.47094 * 59.99560 * 1 2 3 30 30 H 1.08997 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47291 * 120.00865 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00402 * 2 1 3 33 33 H 1.07996 * 120.01054 * 359.97438 * 7 6 4 34 34 H 1.07998 * 119.88661 * 180.23384 * 8 7 6 35 35 H 1.08008 * 119.87946 * 179.74578 * 9 8 7 36 36 H 0.97000 * 120.00180 * 33.34977 * 11 10 9 37 37 H 0.96995 * 120.00279 * 359.97438 * 14 12 11 38 38 H 0.97002 * 120.00188 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.47115 * 54.99571 * 25 15 14 40 40 H 1.08995 * 109.47555 * 174.99893 * 25 15 14 41 41 H 1.09000 * 109.46838 * 299.99730 * 26 25 15 42 42 H 1.08995 * 109.47073 * 59.99587 * 26 25 15 43 43 H 1.09001 * 109.47096 * 179.97438 * 26 25 15 44 44 H 1.07994 * 120.11716 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3496 1.5454 0.0005 5 8 4.0894 0.5820 0.0005 6 6 3.9143 2.9106 0.0011 7 6 3.0658 4.0199 -0.0045 8 6 3.5960 5.2937 0.0011 9 6 4.9664 5.4771 0.0020 10 6 5.8192 4.3801 0.0023 11 7 7.2058 4.5717 0.0027 12 6 8.0070 3.6980 -0.6388 13 8 7.5216 2.7991 -1.2981 14 7 9.3462 3.8210 -0.5495 15 6 10.2170 2.8711 -1.2463 16 1 9.7563 1.8832 -1.2393 17 6 11.5514 2.8080 -0.5489 18 1 11.7325 3.4145 0.3262 19 6 12.5407 1.9752 -1.0273 20 7 12.3199 1.2363 -2.0926 21 14 14.1944 1.8965 -0.1623 22 1 14.1570 0.8420 0.8824 23 1 15.2554 1.5764 -1.1510 24 1 14.4858 3.2087 0.4690 25 6 10.4184 3.3296 -2.6920 26 6 9.0822 3.2744 -3.4355 27 6 5.2971 3.0961 0.0011 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.9949 3.8807 -0.0097 34 1 2.9383 6.1503 0.0005 35 1 5.3755 6.4767 0.0022 36 1 7.5901 5.3332 0.4645 37 1 9.7334 4.5384 -0.0240 38 1 13.0157 0.6501 -2.4289 39 1 10.7963 4.3520 -2.6996 40 1 11.1358 2.6734 -3.1848 41 1 8.7043 2.2520 -3.4279 42 1 8.3649 3.9306 -2.9427 43 1 9.2256 3.6015 -4.4653 44 1 5.9583 2.2423 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157130764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:17 Heat of formation + Delta-G solvation = -114.003396 kcal Electronic energy + Delta-G solvation = -26619.878121 eV Core-core repulsion = 22729.444359 eV Total energy + Delta-G solvation = -3890.433762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.90607 -41.35250 -39.63219 -37.73108 -37.18788 -35.70701 -34.34144 -33.01304 -32.68786 -32.01232 -30.49934 -28.74449 -26.01908 -25.17608 -23.92210 -23.74044 -22.24637 -21.98557 -21.35880 -19.79589 -19.43824 -18.34213 -17.94131 -17.65714 -17.39327 -16.94618 -16.72072 -16.51793 -15.88325 -15.66835 -15.26358 -15.04910 -14.71431 -14.54622 -14.50470 -14.28062 -13.67858 -13.62097 -13.50255 -13.19899 -12.96473 -12.88377 -12.84440 -12.73802 -12.70309 -12.48356 -12.16038 -12.07017 -11.74730 -11.62615 -11.59226 -11.39829 -11.09354 -11.00877 -10.55227 -10.05055 -9.73927 -9.08627 -8.16923 -6.34398 -0.36133 0.33673 1.41555 1.44112 1.44864 1.48603 1.55493 1.80521 2.21809 2.41552 2.83518 3.12793 3.44186 3.59190 3.93727 3.96896 4.05590 4.12773 4.21036 4.31441 4.39287 4.47953 4.50570 4.55883 4.71827 4.78483 4.91254 4.92149 5.03772 5.08387 5.18221 5.26091 5.31505 5.32775 5.38777 5.42778 5.49079 5.53752 5.59984 5.74672 5.85947 5.95816 6.15812 6.26793 6.61274 6.73941 7.24766 7.34232 7.70858 8.88780 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.002849 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.945414 B = 9826.716492 C =10664.497997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.345 6.345 4 C 0.507 3.493 5 O -0.547 6.547 6 C -0.130 4.130 7 C -0.075 4.075 8 C -0.096 4.096 9 C -0.099 4.099 10 C 0.149 3.851 11 N -0.676 5.676 12 C 0.689 3.311 13 O -0.615 6.615 14 N -0.713 5.713 15 C 0.295 3.705 16 H -0.006 1.006 17 C -0.546 4.546 18 H 0.074 0.926 19 C 0.014 3.986 20 N -0.916 5.916 21 Si 0.972 3.028 22 H -0.281 1.281 23 H -0.284 1.284 24 H -0.258 1.258 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.091 4.091 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.163 0.837 34 H 0.183 0.817 35 H 0.171 0.829 36 H 0.425 0.575 37 H 0.404 0.596 38 H 0.265 0.735 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.019 0.981 42 H 0.042 0.958 43 H 0.045 0.955 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.163 11.234 6.461 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.262 6.262 4 C 0.354 3.646 5 O -0.439 6.439 6 C -0.132 4.132 7 C -0.093 4.093 8 C -0.114 4.114 9 C -0.119 4.119 10 C 0.053 3.947 11 N -0.327 5.327 12 C 0.389 3.611 13 O -0.494 6.494 14 N -0.365 5.365 15 C 0.191 3.809 16 H 0.012 0.988 17 C -0.585 4.585 18 H 0.092 0.908 19 C -0.186 4.186 20 N -0.554 5.554 21 Si 0.797 3.203 22 H -0.207 1.207 23 H -0.209 1.209 24 H -0.181 1.181 25 C -0.159 4.159 26 C -0.177 4.177 27 C -0.112 4.112 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.180 0.820 34 H 0.200 0.800 35 H 0.188 0.812 36 H 0.264 0.736 37 H 0.239 0.761 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.203 9.952 5.744 25.001 hybrid contribution 1.764 -0.661 0.501 1.949 sum -20.440 9.291 6.245 23.305 Atomic orbital electron populations 1.21812 0.89279 1.04551 1.04150 1.23372 0.97703 0.78968 1.02326 1.86510 1.22085 1.33777 1.83819 1.21574 0.81073 0.90170 0.71779 1.90860 1.61513 1.43989 1.47493 1.18964 0.93045 0.90597 1.10583 1.21694 1.00797 0.91019 0.95833 1.21441 0.94328 0.97662 0.98007 1.21593 0.93512 0.98149 0.98659 1.17560 0.82725 0.93297 1.01089 1.42489 1.03932 1.29840 1.56406 1.16267 0.82373 0.82379 0.80061 1.90938 1.75037 1.36875 1.46579 1.45410 1.03077 1.34244 1.53794 1.18276 0.87219 0.86210 0.89150 0.98829 1.21560 0.97703 1.25894 1.13300 0.90783 1.25794 1.02672 0.94597 0.95554 1.70061 1.35170 1.26300 1.23896 0.85348 0.78215 0.78876 0.77895 1.20703 1.20939 1.18143 1.21791 0.96535 0.99892 0.97659 1.21637 0.97826 0.99611 0.98645 1.21114 0.94159 0.97601 0.98323 0.90591 0.90879 0.88194 0.91545 0.92017 0.81968 0.79956 0.81195 0.73599 0.76138 0.92602 0.93630 0.91011 0.96153 0.93897 0.93639 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 10.29 71.98 0.74 -0.89 16 2 C 0.05 1.02 6.19 71.98 0.45 1.46 16 3 O -0.35 -8.62 9.47 -56.14 -0.53 -9.15 16 4 C 0.51 16.61 7.90 70.33 0.56 17.16 16 5 O -0.55 -22.82 16.13 19.93 0.32 -22.50 16 6 C -0.13 -3.86 5.87 -20.11 -0.12 -3.97 16 7 C -0.07 -1.42 9.61 22.55 0.22 -1.20 16 8 C -0.10 -1.32 10.02 22.21 0.22 -1.10 16 9 C -0.10 -1.70 9.95 22.45 0.22 -1.47 16 10 C 0.15 4.17 6.27 38.10 0.24 4.41 16 11 N -0.68 -19.52 5.35 -317.27 -1.70 -21.21 16 12 C 0.69 28.10 6.87 179.05 1.23 29.33 16 13 O -0.61 -31.12 11.16 -3.99 -0.04 -31.17 16 14 N -0.71 -29.44 5.03 -461.41 -2.32 -31.76 16 15 C 0.30 15.40 2.24 44.25 0.10 15.50 16 16 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 17 C -0.55 -29.03 8.73 25.60 0.22 -28.81 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 19 C 0.01 0.75 5.29 84.65 0.45 1.20 16 20 N -0.92 -53.35 11.29 21.45 0.24 -53.10 16 21 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 C -0.12 -5.99 5.45 30.60 0.17 -5.83 16 26 C -0.12 -5.63 8.51 71.99 0.61 -5.02 16 27 C -0.09 -3.21 8.20 22.67 0.19 -3.03 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.16 2.18 7.61 -2.91 -0.02 2.16 16 34 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 35 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.43 8.32 8.83 -92.71 -0.82 7.50 16 37 H 0.40 13.58 8.56 -92.71 -0.79 12.79 16 38 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 4.03 5.95 -2.39 -0.01 4.01 16 41 H 0.02 1.03 7.84 -2.39 -0.02 1.01 16 42 H 0.04 1.95 5.64 -2.39 -0.01 1.93 16 43 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.10 4.68 6.00 -2.91 -0.02 4.66 16 Total: -1.00 -79.98 367.86 2.92 -77.06 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.57 Total: 29.61 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 5.49 Total: 17.75 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -3.77 Total: -106.08 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: -0.25 Total: -62.81 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -79.98 2.92 -77.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157130764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.940 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds