Wall clock time and date at job start Tue Mar 31 2020 12:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 H 1.09000 * 109.46958 * 54.99567 * 3 2 1 5 5 C 1.50693 * 109.46963 * 174.99963 * 3 2 1 6 6 H 1.08004 * 120.00269 * 120.00161 * 5 3 2 7 7 C 1.37871 * 120.00227 * 299.99761 * 5 3 2 8 8 N 1.31517 * 120.00052 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00457 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46786 * 59.99625 * 9 7 5 11 11 H 1.48498 * 109.47230 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46753 * 300.00263 * 9 7 5 13 13 N 1.46494 * 109.47042 * 295.00004 * 3 2 1 14 14 C 1.34775 * 120.00282 * 85.00028 * 13 3 2 15 15 O 1.21583 * 119.99926 * 359.97438 * 14 13 3 16 16 N 1.34781 * 120.00365 * 179.97438 * 14 13 3 17 17 C 1.39976 * 120.00184 * 185.18639 * 16 14 13 18 18 C 1.38989 * 119.99799 * 213.63404 * 17 16 14 19 19 C 1.38220 * 120.23595 * 179.76778 * 18 17 16 20 20 C 1.38011 * 120.22775 * 0.50995 * 19 18 17 21 21 C 1.50699 * 120.00825 * 179.71957 * 20 19 18 22 22 C 1.39634 * 119.98404 * 359.74890 * 20 19 18 23 23 C 1.47741 * 120.11269 * 179.97438 * 22 20 19 24 24 O 1.21475 * 120.00111 * 353.62981 * 23 22 20 25 25 O 1.34710 * 119.99933 * 173.64194 * 23 22 20 26 26 C 1.45205 * 116.99738 * 179.97438 * 25 23 22 27 27 C 1.38576 * 119.99426 * 33.91241 * 17 16 14 28 28 H 1.09009 * 109.47338 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47504 * 300.00179 * 1 2 3 30 30 H 1.09006 * 109.47396 * 60.00272 * 1 2 3 31 31 H 1.09000 * 109.46782 * 239.99968 * 2 1 3 32 32 H 1.08996 * 109.46886 * 119.99971 * 2 1 3 33 33 H 0.97000 * 120.00326 * 179.97438 * 8 7 5 34 34 H 0.97007 * 120.00124 * 265.00439 * 13 3 2 35 35 H 0.96995 * 119.99822 * 5.19501 * 16 14 13 36 36 H 1.07999 * 119.88321 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.88990 * 180.22944 * 19 18 17 38 38 H 1.08990 * 109.47330 * 263.18028 * 21 20 19 39 39 H 1.09001 * 109.47106 * 23.18609 * 21 20 19 40 40 H 1.09004 * 109.46716 * 143.17841 * 21 20 19 41 41 H 1.09000 * 109.46875 * 179.97438 * 26 25 23 42 42 H 1.09005 * 109.46958 * 299.99049 * 26 25 23 43 43 H 1.08997 * 109.47554 * 59.99943 * 26 25 23 44 44 H 1.08000 * 120.11606 * 359.95265 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8812 1.3819 10 1 6.4993 2.2815 1.3821 11 1 6.3977 0.2167 2.6504 12 1 6.5974 0.1473 0.2349 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3416 2.6318 -0.4321 16 7 0.0787 3.2673 -2.5185 17 6 -1.1405 3.9498 -2.6030 18 6 -1.8476 3.9636 -3.7994 19 6 -3.0544 4.6319 -3.8871 20 6 -3.5604 5.2989 -2.7900 21 6 -4.8735 6.0312 -2.8928 22 6 -2.8552 5.2956 -1.5848 23 6 -3.3941 6.0093 -0.4087 24 8 -4.3907 6.6951 -0.5185 25 8 -2.7801 5.8996 0.7853 26 6 -3.3646 6.6288 1.8965 27 6 -1.6395 4.6163 -1.4953 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0609 2.9500 34 1 2.2719 2.1230 -1.9978 35 1 0.6670 3.2283 -3.2886 36 1 -1.4549 3.4469 -4.6626 37 1 -3.6010 4.6359 -4.8185 38 1 -4.6864 7.0872 -3.0870 39 1 -5.4614 5.6103 -3.7085 40 1 -5.4227 5.9256 -1.9572 41 1 -2.7747 6.4540 2.7963 42 1 -3.3721 7.6946 1.6680 43 1 -4.3860 6.2849 2.0598 44 1 -1.0897 4.6099 -0.5657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157594840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:27 Heat of formation + Delta-G solvation = -87.483055 kcal Electronic energy + Delta-G solvation = -27088.076350 eV Core-core repulsion = 23198.792596 eV Total energy + Delta-G solvation = -3889.283754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.80970 -39.98961 -38.53060 -36.54259 -35.53225 -34.36111 -32.55702 -31.56804 -31.49777 -30.45853 -27.85670 -27.15024 -26.06392 -24.12236 -23.11327 -22.10993 -21.15471 -20.29283 -19.55285 -18.45798 -17.96959 -17.12770 -16.37233 -16.17373 -15.82051 -15.62221 -15.28995 -14.93793 -14.54901 -14.21284 -13.97860 -13.71728 -13.51205 -13.33294 -12.96474 -12.67839 -12.64633 -12.24149 -12.13651 -11.97928 -11.80734 -11.56465 -11.54930 -11.26489 -11.00733 -10.85106 -10.77996 -10.35023 -10.23975 -10.19629 -9.95451 -9.61659 -9.44314 -9.08862 -9.02199 -8.52936 -8.04852 -7.73514 -6.14770 -4.24440 0.68310 1.34729 2.50757 2.71582 3.11346 3.23702 3.29545 3.31289 3.58681 3.96363 4.29679 4.59662 4.78644 4.88505 4.94708 5.07514 5.10313 5.14991 5.16962 5.29877 5.40672 5.48822 5.67516 5.73362 5.86173 5.98277 6.17167 6.27589 6.29762 6.39677 6.46911 6.49656 6.60426 6.65782 6.98318 7.03143 7.11872 7.31755 7.35501 7.42722 7.61762 7.75328 7.83887 7.94512 8.16168 8.69599 8.80661 9.20409 9.43721 10.90472 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016879 B = 0.003176 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.461956 B = 8814.350089 C = 9654.446774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.717 5.717 14 C 0.690 3.310 15 O -0.572 6.572 16 N -0.697 5.697 17 C 0.165 3.835 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.047 4.047 21 C -0.117 4.117 22 C -0.115 4.115 23 C 0.512 3.488 24 O -0.508 6.508 25 O -0.346 6.346 26 C 0.038 3.962 27 C -0.059 4.059 28 H 0.021 0.979 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.157 9.294 -10.395 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.368 5.368 14 C 0.391 3.609 15 O -0.449 6.449 16 N -0.346 5.346 17 C 0.069 3.931 18 C -0.137 4.137 19 C -0.133 4.133 20 C -0.049 4.049 21 C -0.173 4.173 22 C -0.117 4.117 23 C 0.358 3.642 24 O -0.399 6.399 25 O -0.262 6.262 26 C -0.056 4.056 27 C -0.080 4.080 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.218 0.782 35 H 0.238 0.762 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.019 9.300 -9.226 17.778 hybrid contribution 1.588 -0.092 -0.534 1.678 sum -10.431 9.208 -9.759 16.995 Atomic orbital electron populations 1.21819 0.98239 0.97922 1.01314 1.21961 0.92698 0.99863 1.02236 1.18729 0.93997 0.88902 0.79880 0.93118 1.21174 0.90624 1.39260 1.06369 0.92148 1.24869 0.98596 0.94776 0.95350 1.69884 1.35229 1.37401 1.09307 0.86509 0.84812 0.78309 0.77462 1.20185 1.21122 1.20192 1.45847 1.12926 1.58706 1.19319 1.16139 0.83705 0.78784 0.82283 1.90931 1.51586 1.64280 1.38107 1.42887 1.19886 1.56438 1.15353 1.17371 0.87337 0.94081 0.94359 1.21121 0.94712 1.00448 0.97386 1.20699 0.95788 0.98731 0.98097 1.19894 0.96549 0.96992 0.91424 1.21030 0.93272 0.99488 1.03528 1.18774 0.97453 1.03843 0.91597 1.21205 0.81117 0.78580 0.83261 1.90758 1.25017 1.38662 1.85453 1.86659 1.54574 1.66674 1.18291 1.23280 0.99458 0.96047 0.86824 1.21583 0.94840 0.91781 0.99796 0.96005 0.93096 0.94314 0.95111 0.88249 0.92455 0.78213 0.76180 0.85179 0.84949 0.90907 0.92285 0.89292 0.87867 0.91977 0.91914 0.82744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.29 6.97 2.24 -69.09 -0.15 6.81 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.71 8.73 -34.45 -0.30 -14.01 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.17 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.72 -14.07 5.03 -59.82 -0.30 -14.37 16 14 C 0.69 13.11 6.87 -86.92 -0.60 12.52 16 15 O -0.57 -12.88 11.19 5.29 0.06 -12.82 16 16 N -0.70 -9.97 5.35 -14.26 -0.08 -10.04 16 17 C 0.16 2.34 6.26 -83.74 -0.52 1.81 16 18 C -0.12 -1.28 9.95 -39.31 -0.39 -1.67 16 19 C -0.11 -1.20 9.65 -39.67 -0.38 -1.59 16 20 C -0.05 -0.59 5.92 -104.19 -0.62 -1.20 16 21 C -0.12 -1.27 8.71 36.00 0.31 -0.95 16 22 C -0.11 -1.69 5.87 -105.00 -0.62 -2.31 16 23 C 0.51 7.75 7.82 34.61 0.27 8.02 16 24 O -0.51 -7.79 13.13 -19.25 -0.25 -8.04 16 25 O -0.35 -5.19 9.84 -40.52 -0.40 -5.59 16 26 C 0.04 0.41 10.56 101.05 1.07 1.48 16 27 C -0.06 -0.94 8.22 -38.97 -0.32 -1.26 16 28 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 30 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 2.62 5.95 -51.93 -0.31 2.32 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.39 6.44 8.56 -40.82 -0.35 6.09 16 35 H 0.40 4.29 8.83 -40.82 -0.36 3.93 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.00 8.05 -52.49 -0.42 0.57 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 40 H 0.09 1.11 5.87 -51.93 -0.30 0.80 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.16 2.86 6.02 -52.49 -0.32 2.55 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -31.06 362.08 -8.16 -39.22 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.07 Total: 11.16 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.18 Total: 3.43 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.25 Total: -47.96 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.59 Total: -26.45 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.06 -8.16 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157594840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.262 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds