Wall clock time and date at job start Tue Mar 31 2020 12:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 H 1.09000 * 109.46958 * 54.99567 * 3 2 1 5 5 C 1.50693 * 109.46963 * 174.99963 * 3 2 1 6 6 H 1.08004 * 120.00269 * 120.00161 * 5 3 2 7 7 C 1.37871 * 120.00227 * 299.99761 * 5 3 2 8 8 N 1.31517 * 120.00052 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00457 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46786 * 59.99625 * 9 7 5 11 11 H 1.48498 * 109.47230 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46753 * 300.00263 * 9 7 5 13 13 N 1.46494 * 109.47042 * 295.00004 * 3 2 1 14 14 C 1.34775 * 120.00282 * 85.00028 * 13 3 2 15 15 O 1.21583 * 119.99926 * 359.97438 * 14 13 3 16 16 N 1.34781 * 120.00365 * 179.97438 * 14 13 3 17 17 C 1.39976 * 120.00184 * 185.18639 * 16 14 13 18 18 C 1.38989 * 119.99799 * 213.63404 * 17 16 14 19 19 C 1.38220 * 120.23595 * 179.76778 * 18 17 16 20 20 C 1.38011 * 120.22775 * 0.50995 * 19 18 17 21 21 C 1.50699 * 120.00825 * 179.71957 * 20 19 18 22 22 C 1.39634 * 119.98404 * 359.74890 * 20 19 18 23 23 C 1.47741 * 120.11269 * 179.97438 * 22 20 19 24 24 O 1.21475 * 120.00111 * 353.62981 * 23 22 20 25 25 O 1.34710 * 119.99933 * 173.64194 * 23 22 20 26 26 C 1.45205 * 116.99738 * 179.97438 * 25 23 22 27 27 C 1.38576 * 119.99426 * 33.91241 * 17 16 14 28 28 H 1.09009 * 109.47338 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47504 * 300.00179 * 1 2 3 30 30 H 1.09006 * 109.47396 * 60.00272 * 1 2 3 31 31 H 1.09000 * 109.46782 * 239.99968 * 2 1 3 32 32 H 1.08996 * 109.46886 * 119.99971 * 2 1 3 33 33 H 0.97000 * 120.00326 * 179.97438 * 8 7 5 34 34 H 0.97007 * 120.00124 * 265.00439 * 13 3 2 35 35 H 0.96995 * 119.99822 * 5.19501 * 16 14 13 36 36 H 1.07999 * 119.88321 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.88990 * 180.22944 * 19 18 17 38 38 H 1.08990 * 109.47330 * 263.18028 * 21 20 19 39 39 H 1.09001 * 109.47106 * 23.18609 * 21 20 19 40 40 H 1.09004 * 109.46716 * 143.17841 * 21 20 19 41 41 H 1.09000 * 109.46875 * 179.97438 * 26 25 23 42 42 H 1.09005 * 109.46958 * 299.99049 * 26 25 23 43 43 H 1.08997 * 109.47554 * 59.99943 * 26 25 23 44 44 H 1.08000 * 120.11606 * 359.95265 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2279 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8812 1.3819 10 1 6.4993 2.2815 1.3821 11 1 6.3977 0.2167 2.6504 12 1 6.5974 0.1473 0.2349 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3416 2.6318 -0.4321 16 7 0.0787 3.2673 -2.5185 17 6 -1.1405 3.9498 -2.6030 18 6 -1.8476 3.9636 -3.7994 19 6 -3.0544 4.6319 -3.8871 20 6 -3.5604 5.2989 -2.7900 21 6 -4.8735 6.0312 -2.8928 22 6 -2.8552 5.2956 -1.5848 23 6 -3.3941 6.0093 -0.4087 24 8 -4.3907 6.6951 -0.5185 25 8 -2.7801 5.8996 0.7853 26 6 -3.3646 6.6288 1.8965 27 6 -1.6395 4.6163 -1.4953 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0609 2.9500 34 1 2.2719 2.1230 -1.9978 35 1 0.6670 3.2283 -3.2886 36 1 -1.4549 3.4469 -4.6626 37 1 -3.6010 4.6359 -4.8185 38 1 -4.6864 7.0872 -3.0870 39 1 -5.4614 5.6103 -3.7085 40 1 -5.4227 5.9256 -1.9572 41 1 -2.7747 6.4540 2.7963 42 1 -3.3721 7.6946 1.6680 43 1 -4.3860 6.2849 2.0598 44 1 -1.0897 4.6099 -0.5657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157594840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:26 Heat of formation + Delta-G solvation = -107.225868 kcal Electronic energy + Delta-G solvation = -27088.932462 eV Core-core repulsion = 23198.792596 eV Total energy + Delta-G solvation = -3890.139867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.95286 -41.31572 -39.73004 -37.72986 -37.11830 -35.78273 -34.34531 -33.03842 -32.56273 -31.87380 -29.05969 -28.69388 -27.21626 -25.24478 -24.90863 -23.28401 -22.45413 -21.55774 -21.32128 -19.86963 -19.26844 -18.29450 -17.92612 -17.46084 -17.22105 -16.87173 -16.59278 -16.33283 -15.88597 -15.80462 -15.04392 -14.94616 -14.74575 -14.52462 -14.43532 -14.17446 -13.90344 -13.53553 -13.20116 -13.16858 -13.15270 -13.01465 -12.87988 -12.74251 -12.65202 -12.59040 -12.15886 -12.04208 -11.83833 -11.59426 -11.34450 -11.14751 -11.03572 -10.91678 -10.51254 -10.04670 -9.67779 -8.95343 -8.13960 -6.31076 -0.35250 0.31521 1.41410 1.46754 1.48323 1.55857 1.69828 1.82441 2.24535 2.43914 2.79347 3.15664 3.42814 3.67372 3.89103 3.95829 4.18014 4.21234 4.27509 4.34387 4.46401 4.51995 4.59832 4.62523 4.76084 4.81772 4.85889 4.86130 5.03650 5.07936 5.19343 5.23155 5.28781 5.34512 5.45207 5.48614 5.56704 5.62450 5.63363 5.78462 5.89387 5.97478 6.19306 6.30522 6.63435 6.77033 7.28631 7.37483 7.75051 8.91186 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016879 B = 0.003176 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.461956 B = 8814.350089 C = 9654.446774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.714 5.714 14 C 0.690 3.310 15 O -0.611 6.611 16 N -0.677 5.677 17 C 0.142 3.858 18 C -0.094 4.094 19 C -0.102 4.102 20 C -0.047 4.047 21 C -0.114 4.114 22 C -0.136 4.136 23 C 0.506 3.494 24 O -0.517 6.517 25 O -0.370 6.370 26 C 0.030 3.970 27 C -0.082 4.082 28 H 0.042 0.958 29 H 0.023 0.977 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.423 0.577 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.120 0.880 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 9.377 -13.904 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.366 5.366 14 C 0.391 3.609 15 O -0.491 6.491 16 N -0.327 5.327 17 C 0.047 3.953 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.048 4.048 21 C -0.170 4.170 22 C -0.138 4.138 23 C 0.353 3.647 24 O -0.408 6.408 25 O -0.287 6.287 26 C -0.063 4.063 27 C -0.104 4.104 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.262 0.738 36 H 0.188 0.812 37 H 0.194 0.806 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.138 0.862 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.070 9.415 -12.807 19.959 hybrid contribution 1.488 -0.036 0.540 1.583 sum -10.582 9.379 -12.268 18.720 Atomic orbital electron populations 1.21639 0.97113 0.98812 1.00160 1.21800 0.93568 0.99298 1.01313 1.18250 0.93382 0.88793 0.80228 0.98356 1.21538 0.91351 1.38980 1.06747 0.90915 1.25742 1.03173 0.94425 0.95034 1.70045 1.37086 1.38280 1.09831 0.85442 0.79242 0.78372 0.77525 1.19771 1.21370 1.18854 1.45423 1.13777 1.58945 1.18471 1.16222 0.82993 0.78657 0.83053 1.90922 1.52636 1.65540 1.40009 1.42484 1.20481 1.55343 1.14377 1.17592 0.87700 0.94759 0.95283 1.21518 0.94044 0.99048 0.96827 1.21208 0.95376 0.96568 0.98825 1.20269 0.96822 0.96716 0.91015 1.21021 0.92493 0.99765 1.03685 1.18933 0.97638 1.04647 0.92598 1.21445 0.81060 0.78610 0.83566 1.90737 1.25264 1.39159 1.85664 1.86653 1.55383 1.67412 1.19208 1.23553 1.00021 0.96355 0.86360 1.21324 0.95706 0.94029 0.99306 0.93901 0.95797 0.93876 0.93925 0.91022 0.92626 0.76260 0.73781 0.81219 0.80552 0.90551 0.89119 0.91339 0.86156 0.90984 0.91358 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.82 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.69 16 3 C 0.30 14.90 2.24 44.24 0.10 15.00 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -28.26 8.73 25.60 0.22 -28.04 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -51.71 11.29 21.45 0.24 -51.46 16 9 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.71 -28.15 5.03 -461.44 -2.32 -30.47 16 14 C 0.69 26.60 6.87 179.05 1.23 27.83 16 15 O -0.61 -28.95 11.19 -3.98 -0.04 -28.99 16 16 N -0.68 -18.57 5.35 -317.28 -1.70 -20.27 16 17 C 0.14 3.86 6.26 38.10 0.24 4.10 16 18 C -0.09 -1.70 9.95 22.45 0.22 -1.48 16 19 C -0.10 -1.69 9.65 22.21 0.21 -1.47 16 20 C -0.05 -1.07 5.92 -19.58 -0.12 -1.19 16 21 C -0.11 -2.19 8.71 71.24 0.62 -1.57 16 22 C -0.14 -4.08 5.87 -20.11 -0.12 -4.20 16 23 C 0.51 16.04 7.82 70.33 0.55 16.59 16 24 O -0.52 -16.21 13.13 19.92 0.26 -15.95 16 25 O -0.37 -11.93 9.84 -56.20 -0.55 -12.48 16 26 C 0.03 0.68 10.56 113.37 1.20 1.88 16 27 C -0.08 -2.73 8.22 22.67 0.19 -2.54 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.02 1.17 7.84 -2.39 -0.02 1.15 16 30 H 0.04 1.89 5.64 -2.38 -0.01 1.87 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 33 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.40 12.99 8.56 -92.70 -0.79 12.20 16 35 H 0.42 7.93 8.83 -92.71 -0.82 7.11 16 36 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.18 1.46 8.05 -2.91 -0.02 1.43 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.17 8.04 -2.39 -0.02 1.15 16 40 H 0.07 1.65 5.87 -2.39 -0.01 1.63 16 41 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.12 4.71 6.02 -2.91 -0.02 4.69 16 Total: -1.00 -72.04 362.08 3.13 -68.91 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.56 Total: 31.62 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 5.78 Total: 15.73 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -3.77 Total: -102.20 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -0.34 Total: -57.43 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -72.04 3.13 -68.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157594840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.314 kcal (2) G-P(sol) polarization free energy of solvation -72.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds