Wall clock time and date at job start Tue Mar 31 2020 12:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47617 * 2 1 4 4 N 1.46501 * 109.47590 * 180.02562 * 3 2 1 5 5 C 1.37097 * 119.99957 * 263.43944 * 4 3 2 6 6 H 1.07998 * 119.99731 * 188.12157 * 5 4 3 7 7 C 1.38951 * 119.99990 * 8.11224 * 5 4 3 8 8 N 1.31409 * 120.00161 * 25.95050 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 205.94442 * 7 5 4 10 10 H 1.48500 * 109.47219 * 84.99178 * 9 7 5 11 11 H 1.48504 * 109.46739 * 204.98877 * 9 7 5 12 12 H 1.48494 * 109.47166 * 324.98957 * 9 7 5 13 13 C 1.34774 * 119.99930 * 83.43284 * 4 3 2 14 14 O 1.21294 * 119.99915 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00028 * 0.02562 * 13 4 3 16 16 C 1.53001 * 109.46993 * 179.97438 * 15 13 4 17 17 O 1.42904 * 109.46949 * 180.02562 * 16 15 13 18 18 C 1.35717 * 116.99663 * 180.02562 * 17 16 15 19 19 C 1.38993 * 119.90674 * 179.97438 * 18 17 16 20 20 C 1.37703 * 120.08789 * 180.02562 * 19 18 17 21 21 C 1.39732 * 119.90978 * 359.97438 * 20 19 18 22 22 C 1.47598 * 120.08910 * 179.97438 * 21 20 19 23 23 N 1.34786 * 120.00251 * 179.97438 * 22 21 20 24 24 O 1.21581 * 120.00032 * 0.02562 * 22 21 20 25 25 C 1.39734 * 119.82613 * 0.27668 * 21 20 19 26 26 C 1.37711 * 119.90878 * 359.46512 * 25 21 20 27 27 H 1.08995 * 109.47725 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47346 * 299.99959 * 1 2 3 29 29 H 1.09003 * 109.46798 * 59.99898 * 1 2 3 30 30 H 1.09012 * 109.47222 * 240.00039 * 2 1 3 31 31 H 1.09001 * 109.47506 * 120.00705 * 2 1 3 32 32 H 1.08998 * 109.46729 * 59.99663 * 3 2 1 33 33 H 1.09003 * 109.47120 * 299.99905 * 3 2 1 34 34 H 0.96996 * 120.00125 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47170 * 60.00097 * 15 13 4 36 36 H 1.08994 * 109.47066 * 300.00087 * 15 13 4 37 37 H 1.09000 * 109.46962 * 60.00118 * 16 15 13 38 38 H 1.08994 * 109.47407 * 300.00027 * 16 15 13 39 39 H 1.08003 * 119.95783 * 0.02562 * 19 18 17 40 40 H 1.07994 * 120.04867 * 179.97438 * 20 19 18 41 41 H 0.96995 * 119.99438 * 359.97438 * 23 22 21 42 42 H 0.96993 * 119.99922 * 179.72892 * 23 22 21 43 43 H 1.08004 * 120.04936 * 179.72558 * 25 21 20 44 44 H 1.07997 * 119.95423 * 180.25558 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5779 1.1786 6 1 5.2629 1.7097 1.1677 7 6 3.5072 1.5458 2.3878 8 7 2.3627 0.9065 2.4787 9 14 4.2149 2.4115 3.8842 10 1 3.8194 3.8427 3.8613 11 1 3.6917 1.7731 5.1188 12 1 5.6960 2.3068 3.8622 13 6 4.1784 1.3091 -1.1604 14 8 5.3914 1.3086 -1.1609 15 6 3.4243 1.1606 -2.4568 16 6 4.4181 1.0283 -3.6126 17 8 3.7031 0.8881 -4.8419 18 6 4.4418 0.7581 -5.9729 19 6 3.8083 0.6174 -7.2021 20 6 4.5542 0.4847 -8.3520 21 6 5.9497 0.4923 -8.2820 22 6 6.7531 0.3498 -9.5119 23 7 8.0992 0.3579 -9.4425 24 8 6.2007 0.2261 -10.5879 25 6 6.5828 0.6288 -7.0438 26 6 5.8297 0.7663 -5.8990 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.8852 0.8844 3.3227 35 1 2.7980 2.0385 -2.6154 36 1 2.7974 0.2702 -2.4125 37 1 5.0448 0.1507 -3.4542 38 1 5.0448 1.9190 -3.6568 39 1 2.7296 0.6120 -7.2554 40 1 4.0613 0.3749 -9.3066 41 1 8.5398 0.4577 -8.5842 42 1 8.6270 0.2603 -10.2503 43 1 7.6612 0.6307 -6.9850 44 1 6.3183 0.8760 -4.9421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176147312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:48 Heat of formation + Delta-G solvation = -104.645144 kcal Electronic energy + Delta-G solvation = -26078.095984 eV Core-core repulsion = 22188.068026 eV Total energy + Delta-G solvation = -3890.027958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49657 -40.67865 -40.17324 -38.11141 -37.22488 -34.86020 -34.32146 -33.15381 -32.87452 -31.99413 -30.77842 -27.79537 -26.62325 -25.30428 -24.57418 -23.20573 -22.33154 -21.53406 -20.55396 -19.59562 -18.92309 -18.72027 -17.88033 -17.74040 -17.36705 -16.56660 -16.33222 -16.06642 -15.94220 -15.85456 -15.66697 -15.29750 -15.13020 -14.58462 -14.41278 -14.28445 -14.22039 -13.81410 -13.56965 -13.52670 -13.15243 -12.85971 -12.80001 -12.66829 -12.46587 -12.12483 -12.06431 -11.97792 -11.80849 -11.75242 -11.30278 -11.21945 -10.74528 -10.71915 -10.37010 -10.13520 -9.68756 -9.32830 -8.33153 -5.82273 -0.15895 0.29032 1.36744 1.44870 1.53771 1.80756 1.89994 2.00058 2.32738 2.57390 2.81623 3.05634 3.19266 3.65141 3.80041 3.87593 3.93768 3.95985 4.07205 4.15118 4.28181 4.37516 4.48469 4.53373 4.61205 4.64993 4.78485 4.83817 4.91709 4.93441 5.08477 5.12093 5.22230 5.25263 5.30007 5.39854 5.48941 5.61104 5.63978 5.88563 5.95165 6.08327 6.27610 6.40965 6.53323 7.18582 7.28913 7.50410 8.04352 8.64231 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.002319 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.812245 B =12070.019048 C =13073.301891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.119 4.119 3 C 0.124 3.876 4 N -0.447 5.447 5 C -0.353 4.353 6 H 0.073 0.927 7 C 0.009 3.991 8 N -0.859 5.859 9 Si 0.976 3.024 10 H -0.271 1.271 11 H -0.275 1.275 12 H -0.280 1.280 13 C 0.431 3.569 14 O -0.639 6.639 15 C -0.116 4.116 16 C 0.089 3.911 17 O -0.317 6.317 18 C 0.148 3.852 19 C -0.165 4.165 20 C -0.025 4.025 21 C -0.197 4.197 22 C 0.568 3.432 23 N -0.832 5.832 24 O -0.591 6.591 25 C -0.031 4.031 26 C -0.227 4.227 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.274 0.726 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.415 0.585 42 H 0.413 0.587 43 H 0.163 0.837 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -0.495 -15.328 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.001 3.999 4 N -0.164 5.164 5 C -0.480 4.480 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.497 5.497 9 Si 0.801 3.199 10 H -0.196 1.196 11 H -0.200 1.200 12 H -0.205 1.205 13 C 0.221 3.779 14 O -0.528 6.528 15 C -0.156 4.156 16 C 0.014 3.986 17 O -0.230 6.230 18 C 0.101 3.899 19 C -0.184 4.184 20 C -0.044 4.044 21 C -0.201 4.201 22 C 0.356 3.644 23 N -0.396 5.396 24 O -0.473 6.473 25 C -0.050 4.050 26 C -0.245 4.245 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.248 0.752 42 H 0.245 0.755 43 H 0.180 0.820 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.624 -0.598 -15.673 15.769 hybrid contribution 0.977 0.275 1.285 1.638 sum 2.601 -0.323 -14.389 14.625 Atomic orbital electron populations 1.21522 0.94299 1.01433 1.01440 1.21752 0.96543 0.96709 1.00747 1.21644 0.78786 0.98098 1.01362 1.44009 1.06704 1.60441 1.05254 1.19537 0.93482 1.51049 0.83932 0.90890 1.25798 0.96939 0.96231 1.00568 1.70190 1.16761 1.35201 1.27502 0.85213 0.78286 0.78919 0.77474 1.19623 1.19972 1.20508 1.20368 0.87649 0.83795 0.86062 1.90474 1.15808 1.58780 1.87775 1.21286 0.98608 1.05592 0.90117 1.22326 0.93903 1.02168 0.80188 1.85949 1.36482 1.86552 1.14000 1.19614 0.90750 0.92753 0.86740 1.20574 1.01756 1.07184 0.88856 1.21163 0.92536 0.92318 0.98385 1.19849 0.94536 1.12412 0.93289 1.18252 0.83404 0.74814 0.87974 1.43589 1.05795 1.75378 1.14840 1.90788 1.72679 1.52466 1.31350 1.21333 1.01160 0.92663 0.89800 1.21486 0.92779 1.09273 1.00995 0.92542 0.93406 0.91988 0.94326 0.91793 0.89912 0.91882 0.91620 0.87611 0.87909 0.91673 0.91358 0.83118 0.83713 0.75224 0.75477 0.81951 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.12 -4.53 5.67 30.59 0.17 -4.36 16 3 C 0.12 5.10 4.35 86.38 0.38 5.48 16 4 N -0.45 -21.88 2.64 -635.53 -1.68 -23.56 16 5 C -0.35 -19.19 9.42 84.04 0.79 -18.40 16 6 H 0.07 4.34 7.31 -2.91 -0.02 4.32 16 7 C 0.01 0.44 4.88 84.93 0.41 0.85 16 8 N -0.86 -41.55 8.70 21.66 0.19 -41.36 16 9 Si 0.98 40.49 29.62 68.60 2.03 42.53 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.43 20.00 7.58 87.66 0.66 20.67 16 14 O -0.64 -34.17 15.57 -3.07 -0.05 -34.22 16 15 C -0.12 -3.95 4.68 29.85 0.14 -3.81 16 16 C 0.09 2.76 4.02 71.98 0.29 3.05 16 17 O -0.32 -8.86 10.12 -90.38 -0.92 -9.78 16 18 C 0.15 3.69 6.70 22.63 0.15 3.84 16 19 C -0.17 -3.61 9.97 22.32 0.22 -3.39 16 20 C -0.03 -0.53 9.58 22.50 0.22 -0.32 16 21 C -0.20 -3.98 5.87 -20.08 -0.12 -4.10 16 22 C 0.57 11.60 8.04 86.71 0.70 12.30 16 23 N -0.83 -9.17 8.82 -175.76 -1.55 -10.72 16 24 O -0.59 -16.86 17.17 -3.97 -0.07 -16.93 16 25 C -0.03 -0.54 9.53 22.51 0.21 -0.32 16 26 C -0.23 -5.03 9.01 22.33 0.20 -4.83 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 1.39 6.44 -2.38 -0.02 1.38 16 31 H 0.06 2.92 6.40 -2.39 -0.02 2.90 16 32 H 0.08 3.74 5.83 -2.39 -0.01 3.73 16 33 H 0.06 2.20 6.71 -2.39 -0.02 2.18 16 34 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 35 H 0.11 3.19 7.42 -2.39 -0.02 3.17 16 36 H 0.10 3.27 6.40 -2.39 -0.02 3.25 16 37 H 0.06 2.09 7.61 -2.39 -0.02 2.07 16 38 H 0.07 2.14 7.61 -2.39 -0.02 2.12 16 39 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 40 H 0.15 2.92 7.64 -2.91 -0.02 2.90 16 41 H 0.42 2.18 6.85 -92.71 -0.64 1.55 16 42 H 0.41 3.43 8.93 -92.71 -0.83 2.60 16 43 H 0.16 1.52 6.40 -2.91 -0.02 1.50 16 44 H 0.14 3.13 6.28 -2.91 -0.02 3.11 16 Total: -1.00 -69.11 361.81 2.70 -66.41 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -0.40 Total: 24.11 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.15 Total: 3.52 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -3.04 Total: -75.64 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -1.03 Total: -60.93 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.53 kcal Total: -69.11 2.70 -66.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176147312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.236 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds