Wall clock time and date at job start Tue Mar 31 2020 12:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 O 1.42896 * 109.46896 * 180.02562 * 17 16 14 19 19 C 1.35712 * 116.99584 * 179.97438 * 18 17 16 20 20 C 1.38995 * 119.91196 * 359.72933 * 19 18 17 21 21 C 1.37709 * 120.08950 * 179.71969 * 20 19 18 22 22 C 1.39739 * 119.90663 * 0.56986 * 21 20 19 23 23 C 1.47595 * 120.08726 * 179.67863 * 22 21 20 24 24 N 1.34777 * 119.99893 * 0.02562 * 23 22 21 25 25 O 1.21583 * 120.00440 * 180.02562 * 23 22 21 26 26 C 1.39728 * 119.82363 * 359.70518 * 22 21 20 27 27 C 1.37701 * 119.91375 * 359.97438 * 26 22 21 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 30 30 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 31 31 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 32 32 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 33 33 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 34 34 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 35 35 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 36 36 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 37 37 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 38 38 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 39 39 H 1.08004 * 119.95814 * 0.02562 * 20 19 18 40 40 H 1.07995 * 120.04463 * 180.27561 * 21 20 19 41 41 H 0.97003 * 120.00228 * 359.97438 * 24 23 22 42 42 H 0.97004 * 120.00100 * 180.02562 * 24 23 22 43 43 H 1.08006 * 120.04467 * 179.97438 * 26 22 21 44 44 H 1.08001 * 119.95486 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 8 -1.7352 4.5248 3.7747 19 6 -2.9739 5.0763 3.8331 20 6 -3.8147 5.0105 2.7282 21 6 -5.0744 5.5639 2.7854 22 6 -5.5025 6.2026 3.9522 23 6 -6.8492 6.8033 4.0154 24 7 -7.6680 6.7357 2.9470 25 8 -7.2200 7.3591 5.0312 26 6 -4.6520 6.2716 5.0587 27 6 -3.3964 5.7100 4.9958 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9924 1.1425 -0.6140 34 1 2.2853 2.1184 1.9978 35 1 0.0905 2.6048 3.4843 36 1 0.7469 4.1462 2.8830 37 1 -1.4015 4.6154 1.7380 38 1 -2.0586 3.0742 2.3391 39 1 -3.4815 4.5204 1.8253 40 1 -5.7287 5.5085 1.9281 41 1 -7.3722 6.2926 2.1364 42 1 -8.5530 7.1308 2.9884 43 1 -4.9791 6.7648 5.9622 44 1 -2.7386 5.7625 5.8508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183815158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:27 Heat of formation + Delta-G solvation = -101.775242 kcal Electronic energy + Delta-G solvation = -25777.023784 eV Core-core repulsion = 21887.120274 eV Total energy + Delta-G solvation = -3889.903510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.75910 -39.75728 -39.22615 -37.34200 -35.47122 -34.20131 -32.66861 -32.27988 -31.47639 -31.15881 -29.98668 -27.39691 -24.98839 -23.89779 -22.67446 -22.27296 -20.87781 -20.46017 -19.66788 -18.95104 -18.17480 -17.69638 -17.21116 -16.57407 -16.29012 -15.74748 -15.50905 -15.37575 -15.10575 -14.89198 -14.43749 -13.94019 -13.89708 -13.63650 -13.36699 -13.28787 -12.83221 -12.63802 -12.56511 -12.40717 -12.09083 -11.89622 -11.69895 -11.12580 -11.04112 -10.91862 -10.78647 -10.54417 -10.43150 -10.10466 -9.89196 -9.78985 -9.46150 -9.37073 -8.96802 -8.59598 -8.58764 -8.21413 -6.62387 -4.30742 0.55451 0.96230 2.53224 2.70790 3.06071 3.15172 3.30216 3.39511 3.51364 3.52894 4.00093 4.29049 4.34690 4.46721 4.54236 4.67745 4.82053 4.83093 5.01481 5.12338 5.14632 5.22829 5.45117 5.53782 5.61286 5.62824 5.78735 5.90867 5.93136 5.95328 5.97992 6.13848 6.28881 6.39999 6.59144 6.65911 6.80384 6.90455 6.93164 7.04292 7.23635 7.25934 7.54590 7.88347 8.15286 8.32982 8.60379 8.83499 9.40048 10.78190 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.002087 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.907059 B =13410.506238 C =13914.898343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.049 0.951 5 C -0.612 4.612 6 H 0.062 0.938 7 C 0.035 3.965 8 N -0.903 5.903 9 Si 1.049 2.951 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.697 5.697 14 C 0.507 3.493 15 O -0.553 6.553 16 C -0.143 4.143 17 C 0.074 3.926 18 O -0.312 6.312 19 C 0.168 3.832 20 C -0.217 4.217 21 C -0.041 4.041 22 C -0.189 4.189 23 C 0.569 3.431 24 N -0.854 5.854 25 O -0.547 6.547 26 C -0.018 4.018 27 C -0.164 4.164 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.269 0.731 34 H 0.394 0.606 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.401 0.599 42 H 0.404 0.596 43 H 0.142 0.858 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.357 8.133 9.351 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.138 3.862 4 H 0.067 0.933 5 C -0.650 4.650 6 H 0.080 0.920 7 C -0.171 4.171 8 N -0.536 5.536 9 Si 0.878 3.122 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.214 1.214 13 N -0.345 5.345 14 C 0.292 3.708 15 O -0.433 6.433 16 C -0.183 4.183 17 C -0.001 4.001 18 O -0.224 6.224 19 C 0.121 3.879 20 C -0.236 4.236 21 C -0.060 4.060 22 C -0.193 4.193 23 C 0.357 3.643 24 N -0.418 5.418 25 O -0.425 6.425 26 C -0.037 4.037 27 C -0.182 4.182 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.228 0.772 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.230 0.770 42 H 0.235 0.765 43 H 0.160 0.840 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.709 7.755 8.002 23.517 hybrid contribution 0.139 0.430 1.296 1.373 sum -20.570 8.185 9.298 24.012 Atomic orbital electron populations 1.21894 0.97182 0.99048 1.02052 1.22258 0.93991 0.99889 1.01475 1.19271 0.95980 0.88542 0.82437 0.93300 1.22158 0.89662 1.48312 1.04831 0.91974 1.25711 0.97514 0.93586 1.00248 1.70830 1.04422 1.42302 1.36074 0.83937 0.75292 0.77171 0.75832 1.20682 1.19903 1.21350 1.46231 1.14427 1.55548 1.18247 1.20043 0.82921 0.79329 0.88528 1.90677 1.51090 1.60358 1.41205 1.21527 0.96227 1.02278 0.98306 1.22573 0.96154 0.97252 0.84084 1.85979 1.29132 1.68723 1.38615 1.19312 0.84000 0.90708 0.93857 1.21345 0.95640 1.07086 0.99538 1.21056 0.95126 0.93552 0.96292 1.19723 0.95557 1.07478 0.96515 1.18185 0.84823 0.78450 0.82887 1.43766 1.19467 1.61771 1.16750 1.90814 1.76318 1.44425 1.30959 1.21049 0.91273 0.93820 0.97593 1.20450 0.97351 1.02950 0.97481 0.94910 0.93235 0.92872 0.92157 0.92680 0.92089 0.77245 0.88171 0.88073 0.90645 0.90696 0.84161 0.85371 0.76966 0.76516 0.83997 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.52 37.16 0.32 -2.39 16 2 C -0.14 -2.90 5.20 -26.73 -0.14 -3.04 16 3 C 0.24 5.44 1.81 -69.08 -0.13 5.31 16 4 H 0.05 1.22 6.07 -51.93 -0.32 0.90 16 5 C -0.61 -15.93 9.09 -34.44 -0.31 -16.25 16 6 H 0.06 1.69 7.95 -52.48 -0.42 1.27 16 7 C 0.04 0.97 5.42 -17.82 -0.10 0.88 16 8 N -0.90 -26.45 13.70 55.43 0.76 -25.69 16 9 Si 1.05 24.70 25.39 -169.99 -4.32 20.38 16 10 H -0.28 -6.25 6.73 56.52 0.38 -5.87 16 11 H -0.27 -6.19 6.38 56.52 0.36 -5.83 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.70 -12.79 5.03 -54.93 -0.28 -13.07 16 14 C 0.51 8.39 6.42 -10.98 -0.07 8.32 16 15 O -0.55 -10.72 13.12 5.56 0.07 -10.65 16 16 C -0.14 -1.69 6.07 -27.88 -0.17 -1.86 16 17 C 0.07 0.84 4.02 37.16 0.15 0.99 16 18 O -0.31 -3.50 10.12 -18.84 -0.19 -3.69 16 19 C 0.17 1.76 6.70 -39.02 -0.26 1.50 16 20 C -0.22 -2.03 9.01 -39.49 -0.36 -2.38 16 21 C -0.04 -0.33 9.53 -39.21 -0.37 -0.70 16 22 C -0.19 -1.76 5.87 -104.96 -0.62 -2.37 16 23 C 0.57 5.53 8.04 -12.44 -0.10 5.43 16 24 N -0.85 -4.75 8.82 30.47 0.27 -4.48 16 25 O -0.55 -7.37 17.18 5.29 0.09 -7.27 16 26 C -0.02 -0.18 9.58 -39.22 -0.38 -0.55 16 27 C -0.16 -1.55 9.97 -39.50 -0.39 -1.94 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.90 5.64 -51.93 -0.29 0.61 16 30 H 0.05 1.04 7.87 -51.93 -0.41 0.63 16 31 H 0.06 1.33 4.43 -51.93 -0.23 1.10 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.27 7.79 8.72 -40.82 -0.36 7.44 16 34 H 0.39 6.41 8.53 -40.82 -0.35 6.06 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.87 7.60 -51.93 -0.39 0.48 16 38 H 0.07 0.85 7.62 -51.93 -0.40 0.45 16 39 H 0.14 1.23 6.28 -52.48 -0.33 0.90 16 40 H 0.13 0.60 6.39 -52.49 -0.34 0.26 16 41 H 0.40 1.19 6.85 -40.82 -0.28 0.91 16 42 H 0.40 1.73 8.93 -40.82 -0.36 1.37 16 43 H 0.14 1.26 7.64 -52.48 -0.40 0.86 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -33.22 359.98 -6.93 -40.15 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.84 Total: 7.94 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.92 Total: -9.05 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.75 Total: -43.24 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.03 Total: -21.61 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.32 Total: 20.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.22 -6.93 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183815158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.623 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds