Wall clock time and date at job start Tue Mar 31 2020 12:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 O 1.42896 * 109.46896 * 180.02562 * 17 16 14 19 19 C 1.35712 * 116.99584 * 179.97438 * 18 17 16 20 20 C 1.38995 * 119.91196 * 359.72933 * 19 18 17 21 21 C 1.37709 * 120.08950 * 179.71969 * 20 19 18 22 22 C 1.39739 * 119.90663 * 0.56986 * 21 20 19 23 23 C 1.47595 * 120.08726 * 179.67863 * 22 21 20 24 24 N 1.34777 * 119.99893 * 0.02562 * 23 22 21 25 25 O 1.21583 * 120.00440 * 180.02562 * 23 22 21 26 26 C 1.39728 * 119.82363 * 359.70518 * 22 21 20 27 27 C 1.37701 * 119.91375 * 359.97438 * 26 22 21 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 30 30 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 31 31 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 32 32 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 33 33 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 34 34 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 35 35 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 36 36 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 37 37 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 38 38 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 39 39 H 1.08004 * 119.95814 * 0.02562 * 20 19 18 40 40 H 1.07995 * 120.04463 * 180.27561 * 21 20 19 41 41 H 0.97003 * 120.00228 * 359.97438 * 24 23 22 42 42 H 0.97004 * 120.00100 * 180.02562 * 24 23 22 43 43 H 1.08006 * 120.04467 * 179.97438 * 26 22 21 44 44 H 1.08001 * 119.95486 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 8 -1.7352 4.5248 3.7747 19 6 -2.9739 5.0763 3.8331 20 6 -3.8147 5.0105 2.7282 21 6 -5.0744 5.5639 2.7854 22 6 -5.5025 6.2026 3.9522 23 6 -6.8492 6.8033 4.0154 24 7 -7.6680 6.7357 2.9470 25 8 -7.2200 7.3591 5.0312 26 6 -4.6520 6.2716 5.0587 27 6 -3.3964 5.7100 4.9958 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9924 1.1425 -0.6140 34 1 2.2853 2.1184 1.9978 35 1 0.0905 2.6048 3.4843 36 1 0.7469 4.1462 2.8830 37 1 -1.4015 4.6154 1.7380 38 1 -2.0586 3.0742 2.3391 39 1 -3.4815 4.5204 1.8253 40 1 -5.7287 5.5085 1.9281 41 1 -7.3722 6.2926 2.1364 42 1 -8.5530 7.1308 2.9884 43 1 -4.9791 6.7648 5.9622 44 1 -2.7386 5.7625 5.8508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183815158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:27 Heat of formation + Delta-G solvation = -127.262496 kcal Electronic energy + Delta-G solvation = -25778.128994 eV Core-core repulsion = 21887.120274 eV Total energy + Delta-G solvation = -3891.008720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52675 -40.87744 -40.25823 -38.13628 -37.11853 -34.87125 -34.46930 -33.66027 -32.62035 -31.98797 -30.78544 -29.14798 -26.00012 -24.64156 -24.21912 -23.35569 -22.02389 -21.50755 -21.18543 -19.90823 -19.50773 -18.80270 -17.90615 -17.59572 -17.48832 -17.11623 -16.54689 -16.24982 -16.06611 -15.80147 -15.59611 -15.16779 -14.83971 -14.68354 -14.59969 -14.40796 -14.39294 -14.14878 -13.82171 -13.58576 -13.53851 -12.86223 -12.76167 -12.70909 -12.47080 -12.27201 -11.84982 -11.78659 -11.70829 -11.48341 -11.23094 -10.98462 -10.75401 -10.73035 -10.66001 -10.14261 -9.80428 -9.33901 -8.78007 -6.46888 -0.16916 0.28311 1.41640 1.51035 1.67818 1.74816 1.79276 1.79905 2.40292 2.56207 2.74538 2.80739 3.03174 3.59669 3.75546 3.82137 3.92561 3.94984 4.06316 4.14114 4.31021 4.35429 4.39431 4.42320 4.52551 4.59009 4.73275 4.75197 4.87888 4.92550 5.07191 5.09815 5.19308 5.20659 5.29291 5.29890 5.55074 5.59471 5.64757 5.66559 5.87313 6.00191 6.25838 6.40539 6.51644 6.83849 7.28063 7.28349 7.43308 8.61249 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.002087 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.907059 B =13410.506238 C =13914.898343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C 0.246 3.754 4 H 0.028 0.972 5 C -0.605 4.605 6 H 0.040 0.960 7 C -0.013 4.013 8 N -0.936 5.936 9 Si 1.080 2.920 10 H -0.258 1.258 11 H -0.262 1.262 12 H -0.289 1.289 13 N -0.702 5.702 14 C 0.508 3.492 15 O -0.580 6.580 16 C -0.131 4.131 17 C 0.079 3.921 18 O -0.317 6.317 19 C 0.150 3.850 20 C -0.223 4.223 21 C -0.032 4.032 22 C -0.197 4.197 23 C 0.566 3.434 24 N -0.832 5.832 25 O -0.592 6.592 26 C -0.028 4.028 27 C -0.166 4.166 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.257 0.743 34 H 0.404 0.596 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.416 0.584 42 H 0.413 0.587 43 H 0.142 0.858 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.568 7.858 9.310 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.141 3.859 4 H 0.045 0.955 5 C -0.643 4.643 6 H 0.059 0.941 7 C -0.212 4.212 8 N -0.572 5.572 9 Si 0.904 3.096 10 H -0.184 1.184 11 H -0.187 1.187 12 H -0.216 1.216 13 N -0.351 5.351 14 C 0.295 3.705 15 O -0.461 6.461 16 C -0.170 4.170 17 C 0.004 3.996 18 O -0.230 6.230 19 C 0.104 3.896 20 C -0.242 4.242 21 C -0.051 4.051 22 C -0.201 4.201 23 C 0.354 3.646 24 N -0.396 5.396 25 O -0.475 6.475 26 C -0.047 4.047 27 C -0.185 4.185 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.239 0.761 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.164 0.836 40 H 0.180 0.820 41 H 0.248 0.752 42 H 0.245 0.755 43 H 0.159 0.841 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.949 7.479 7.960 25.415 hybrid contribution 0.785 0.592 1.361 1.679 sum -22.164 8.071 9.321 25.363 Atomic orbital electron populations 1.21780 0.95076 1.00581 1.01720 1.22163 0.95808 0.98307 1.01191 1.18905 0.93318 0.89836 0.83819 0.95463 1.22384 0.91759 1.46437 1.03702 0.94144 1.26868 0.97705 0.93726 1.02921 1.70934 1.05446 1.44796 1.36034 0.83540 0.74437 0.78482 0.73179 1.18380 1.18697 1.21595 1.46071 1.15701 1.56103 1.17200 1.20719 0.81651 0.78339 0.89778 1.90665 1.51651 1.61089 1.42692 1.21416 0.96854 1.02924 0.95850 1.22448 0.95778 0.97184 0.84170 1.85941 1.29715 1.69023 1.38301 1.19523 0.84020 0.91450 0.94644 1.21500 0.96035 1.07252 0.99410 1.21353 0.95007 0.91992 0.96736 1.19848 0.95474 1.07730 0.97029 1.18309 0.85240 0.78048 0.83043 1.43599 1.19254 1.60556 1.16194 1.90794 1.77189 1.46643 1.32826 1.21155 0.91509 0.94018 0.97975 1.20564 0.97472 1.02713 0.97730 0.92420 0.92765 0.93988 0.93233 0.92205 0.93359 0.76084 0.85865 0.86437 0.91115 0.90670 0.83615 0.81978 0.75185 0.75521 0.84069 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.52 71.98 0.61 -4.08 16 2 C -0.14 -5.50 5.20 30.59 0.16 -5.34 16 3 C 0.25 10.91 1.81 44.24 0.08 10.99 16 4 H 0.03 1.35 6.07 -2.39 -0.01 1.33 16 5 C -0.60 -31.73 9.09 25.60 0.23 -31.50 16 6 H 0.04 2.25 7.95 -2.91 -0.02 2.22 16 7 C -0.01 -0.70 5.42 84.65 0.46 -0.24 16 8 N -0.94 -55.98 13.70 21.45 0.29 -55.69 16 9 Si 1.08 49.45 25.39 68.60 1.74 51.19 16 10 H -0.26 -10.87 6.73 99.48 0.67 -10.20 16 11 H -0.26 -11.41 6.38 99.48 0.63 -10.78 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 13 N -0.70 -24.83 5.03 -446.10 -2.24 -27.07 16 14 C 0.51 15.83 6.42 87.66 0.56 16.39 16 15 O -0.58 -21.48 13.12 -3.02 -0.04 -21.52 16 16 C -0.13 -2.74 6.07 29.85 0.18 -2.55 16 17 C 0.08 1.63 4.02 71.98 0.29 1.92 16 18 O -0.32 -6.48 10.12 -90.33 -0.91 -7.39 16 19 C 0.15 2.90 6.70 22.63 0.15 3.05 16 20 C -0.22 -3.70 9.01 22.33 0.20 -3.49 16 21 C -0.03 -0.43 9.53 22.51 0.21 -0.22 16 22 C -0.20 -3.37 5.87 -20.09 -0.12 -3.49 16 23 C 0.57 10.27 8.04 86.71 0.70 10.97 16 24 N -0.83 -7.34 8.82 -175.77 -1.55 -8.89 16 25 O -0.59 -15.83 17.18 -3.98 -0.07 -15.90 16 26 C -0.03 -0.50 9.58 22.50 0.22 -0.29 16 27 C -0.17 -2.97 9.97 22.32 0.22 -2.74 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.05 1.83 5.64 -2.39 -0.01 1.81 16 30 H 0.04 1.55 7.87 -2.38 -0.02 1.53 16 31 H 0.05 2.10 4.43 -2.39 -0.01 2.09 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.26 15.41 8.72 -92.71 -0.81 14.60 16 34 H 0.40 12.63 8.53 -92.71 -0.79 11.84 16 35 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.07 1.51 7.60 -2.38 -0.02 1.49 16 38 H 0.08 1.54 7.62 -2.39 -0.02 1.52 16 39 H 0.15 2.23 6.28 -2.91 -0.02 2.21 16 40 H 0.16 0.90 6.39 -2.91 -0.02 0.88 16 41 H 0.42 1.14 6.85 -92.71 -0.64 0.50 16 42 H 0.41 2.66 8.93 -92.70 -0.83 1.83 16 43 H 0.14 2.53 7.64 -2.91 -0.02 2.51 16 44 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -72.71 359.98 0.05 -72.66 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -1.33 Total: 23.24 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 4.16 Total: -10.63 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -3.50 Total: -91.65 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.02 Total: -44.80 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 1.74 Total: 51.19 kcal Total: -72.71 0.05 -72.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183815158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.605 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds