Wall clock time and date at job start Tue Mar 31 2020 12:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46958 * 2 1 4 4 H 1.09005 * 109.47372 * 304.99778 * 3 2 1 5 5 C 1.50705 * 109.47118 * 184.99981 * 3 2 1 6 6 H 1.07998 * 119.99924 * 240.00084 * 5 3 2 7 7 C 1.37873 * 120.00114 * 59.99932 * 5 3 2 8 8 N 1.31519 * 120.00001 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00092 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47377 * 59.99650 * 9 7 5 11 11 H 1.48508 * 109.47057 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47244 * 299.99492 * 9 7 5 13 13 N 1.46502 * 109.47369 * 65.00192 * 3 2 1 14 14 C 1.34784 * 119.99545 * 275.00017 * 13 3 2 15 15 O 1.21280 * 119.99921 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99856 * 179.97438 * 14 13 3 17 17 H 1.09006 * 110.88283 * 62.35690 * 16 14 13 18 18 C 1.54626 * 110.97077 * 298.54858 * 16 14 13 19 19 C 1.51284 * 104.19264 * 217.08562 * 18 16 14 20 20 O 1.21282 * 124.93790 * 196.23015 * 19 18 16 21 21 N 1.34414 * 110.11916 * 16.25017 * 19 18 16 22 22 C 1.46498 * 124.35144 * 180.41151 * 21 19 18 23 23 C 1.50702 * 109.47339 * 90.02020 * 22 21 19 24 24 C 1.34512 * 125.79146 * 89.99984 * 23 22 21 25 25 C 1.41376 * 106.84688 * 179.75198 * 24 23 22 26 26 C 1.34517 * 106.83881 * 0.37683 * 25 24 23 27 27 O 1.34305 * 125.78962 * 269.98207 * 23 22 21 28 28 C 1.46760 * 111.29882 * 0.66982 * 21 19 18 29 29 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46960 * 300.00312 * 1 2 3 31 31 H 1.09003 * 109.47282 * 60.00146 * 1 2 3 32 32 H 1.08993 * 109.47261 * 239.99655 * 2 1 3 33 33 H 1.09001 * 109.46778 * 119.99731 * 2 1 3 34 34 H 0.96990 * 120.00204 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00403 * 94.99809 * 13 3 2 36 36 H 1.08995 * 110.49269 * 98.40448 * 18 16 14 37 37 H 1.09001 * 110.59661 * 335.81419 * 18 16 14 38 38 H 1.09002 * 109.46903 * 330.02624 * 22 21 19 39 39 H 1.08998 * 109.47675 * 210.01901 * 22 21 19 40 40 H 1.08006 * 126.57585 * 359.97438 * 24 23 22 41 41 H 1.07998 * 126.58562 * 180.23597 * 25 24 23 42 42 H 1.08002 * 125.79423 * 179.89440 * 26 25 24 43 43 H 1.09007 * 110.24572 * 101.72615 * 28 21 19 44 44 H 1.09000 * 110.24753 * 223.71710 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0049 0.8801 -1.3811 10 1 6.5967 0.1454 -0.2342 11 1 6.3979 0.2157 -2.6498 12 1 6.5004 2.2800 -1.3808 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6326 0.4340 16 6 0.0361 3.3377 2.6547 17 1 0.6886 4.1843 2.8689 18 6 0.0333 2.3305 3.8280 19 6 -1.1465 2.7521 4.6759 20 8 -1.3364 2.4063 5.8228 21 7 -1.9538 3.5652 3.9732 22 6 -3.1843 4.1630 4.4974 23 6 -2.8666 5.4938 5.1293 24 6 -2.8685 6.6833 4.5013 25 6 -2.5218 7.6566 5.4663 26 6 -2.3206 7.0027 6.6245 27 8 -2.5340 5.6933 6.4151 28 6 -1.4475 3.7722 2.6114 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0618 -2.9494 35 1 2.2719 2.1232 1.9978 36 1 0.9592 2.4062 4.3981 37 1 -0.1051 1.3138 3.4602 38 1 -3.6201 3.5005 5.2453 39 1 -3.8937 4.3079 3.6827 40 1 -3.0952 6.8612 3.4604 41 1 -2.4330 8.7207 5.3042 42 1 -2.0398 7.4545 7.5644 43 1 -2.0033 3.1561 1.9045 44 1 -1.5234 4.8243 2.3366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183830031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:57 Heat of formation + Delta-G solvation = -56.128042 kcal Electronic energy + Delta-G solvation = -27115.644244 eV Core-core repulsion = 23227.720145 eV Total energy + Delta-G solvation = -3887.924099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -42.76094 -40.71046 -38.90147 -36.40922 -35.12183 -33.87734 -33.04165 -32.38259 -31.02993 -29.94526 -27.71392 -27.15707 -26.14052 -23.56925 -22.63901 -21.92497 -21.02922 -20.13685 -19.56666 -19.37090 -17.88303 -17.31490 -17.15070 -16.37844 -15.92520 -15.52850 -15.46829 -15.15233 -14.79573 -14.48411 -14.16244 -13.84538 -13.42364 -13.27767 -13.06982 -13.04082 -13.01900 -12.76294 -12.72087 -12.04823 -11.92105 -11.65343 -11.47984 -11.30611 -11.24790 -11.02598 -10.86408 -10.38017 -10.23452 -10.16021 -10.01476 -9.68558 -9.15858 -9.10218 -9.00091 -8.72218 -8.54597 -7.92513 -6.16918 -4.26726 1.40359 2.30037 2.44518 2.82904 2.99508 3.19268 3.22906 3.28594 3.29511 3.85044 4.23001 4.30539 4.39621 4.46027 4.74108 4.79515 4.89443 4.92784 5.00934 5.14771 5.17153 5.42827 5.46471 5.56061 5.59223 5.65803 5.73885 5.84307 5.92447 6.22901 6.29135 6.33791 6.39163 6.59508 6.84309 6.97376 6.98448 7.12744 7.28959 7.35835 7.55729 7.66358 7.83857 8.02777 8.12702 8.56131 8.70550 9.00702 9.40698 10.88283 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022173 B = 0.002757 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.513620 B =10153.723774 C =10463.137965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.513 3.487 15 O -0.544 6.544 16 C -0.125 4.125 17 H 0.112 0.888 18 C -0.144 4.144 19 C 0.523 3.477 20 O -0.527 6.527 21 N -0.618 5.618 22 C 0.206 3.794 23 C -0.033 4.033 24 C -0.195 4.195 25 C -0.218 4.218 26 C -0.037 4.037 27 O -0.167 6.167 28 C 0.119 3.881 29 H 0.023 0.977 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.390 0.610 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.201 0.799 43 H 0.097 0.903 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.954 10.468 12.854 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.296 3.704 15 O -0.422 6.422 16 C -0.147 4.147 17 H 0.130 0.870 18 C -0.184 4.184 19 C 0.311 3.689 20 O -0.403 6.403 21 N -0.352 5.352 22 C 0.084 3.916 23 C -0.085 4.085 24 C -0.215 4.215 25 C -0.237 4.237 26 C -0.106 4.106 27 O -0.062 6.062 28 C -0.004 4.004 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.218 0.782 43 H 0.115 0.885 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.611 9.913 12.806 19.927 hybrid contribution 1.443 0.447 0.120 1.515 sum -10.168 10.361 12.926 19.438 Atomic orbital electron populations 1.21839 0.98357 0.98112 1.01103 1.21943 0.92580 0.99786 1.02407 1.18812 0.94240 0.89190 0.80829 0.93195 1.21187 0.90687 1.39264 1.06343 0.92112 1.24874 0.98603 0.94742 0.95371 1.69874 1.35269 1.37412 1.09360 0.86520 0.84841 0.78328 0.77491 1.20143 1.21137 1.20183 1.46495 1.14353 1.55411 1.18666 1.19780 0.83095 0.79484 0.88011 1.90686 1.51416 1.60000 1.40147 1.22330 0.97781 0.99691 0.94911 0.86973 1.22344 0.98768 1.01288 0.96038 1.20929 0.84248 0.77443 0.86249 1.90729 1.75498 1.57319 1.16714 1.48396 1.24495 1.48017 1.14321 1.19657 0.85901 0.87696 0.98372 1.22949 1.05554 0.97740 0.82249 1.21666 1.07155 0.91741 1.00978 1.21849 1.07780 1.00860 0.93218 1.24108 1.05053 0.80572 1.00845 1.84104 1.66810 1.27086 1.28186 1.22073 0.93102 1.02825 0.82368 0.95819 0.94422 0.93108 0.88250 0.94960 0.92458 0.77805 0.87213 0.86927 0.88221 0.86768 0.83312 0.83425 0.78206 0.88528 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.52 37.16 0.32 -2.53 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.35 2.24 -69.08 -0.15 6.20 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.48 8.73 -34.44 -0.30 -13.78 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.91 11.29 55.43 0.63 -23.28 16 9 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 13 N -0.70 -12.97 4.97 -54.93 -0.27 -13.24 16 14 C 0.51 8.67 5.64 -10.98 -0.06 8.61 16 15 O -0.54 -10.96 12.71 5.56 0.07 -10.89 16 16 C -0.12 -1.54 3.56 -90.05 -0.32 -1.86 16 17 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -1.73 6.36 -26.74 -0.17 -1.90 16 19 C 0.52 7.24 8.02 -10.86 -0.09 7.15 16 20 O -0.53 -9.06 17.59 5.56 0.10 -8.96 16 21 N -0.62 -7.17 2.91 -173.67 -0.51 -7.67 16 22 C 0.21 2.02 6.46 -5.19 -0.03 1.99 16 23 C -0.03 -0.36 6.90 -35.62 -0.25 -0.61 16 24 C -0.20 -1.91 10.81 -39.71 -0.43 -2.33 16 25 C -0.22 -1.99 10.91 -39.70 -0.43 -2.42 16 26 C -0.04 -0.35 12.09 29.42 0.36 0.01 16 27 O -0.17 -2.04 10.65 5.68 0.06 -1.98 16 28 C 0.12 1.35 6.65 -3.03 -0.02 1.32 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.74 5.65 -51.93 -0.29 0.45 16 31 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 32 H 0.10 2.56 5.95 -51.93 -0.31 2.26 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.39 6.25 8.54 -40.82 -0.35 5.90 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.11 1.41 7.89 -51.93 -0.41 1.00 16 38 H 0.10 1.02 7.92 -51.93 -0.41 0.60 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.10 1.20 7.07 -51.92 -0.37 0.84 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -31.95 366.14 -7.54 -39.48 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.29 Total: 7.65 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.83 Total: -1.61 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.15 Total: -44.20 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.23 Total: -21.83 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.95 -7.54 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183830031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.644 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds