Wall clock time and date at job start Tue Mar 31 2020 12:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46958 * 2 1 4 4 H 1.09005 * 109.47372 * 304.99778 * 3 2 1 5 5 C 1.50705 * 109.47118 * 184.99981 * 3 2 1 6 6 H 1.07998 * 119.99924 * 240.00084 * 5 3 2 7 7 C 1.37873 * 120.00114 * 59.99932 * 5 3 2 8 8 N 1.31519 * 120.00001 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00092 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47377 * 59.99650 * 9 7 5 11 11 H 1.48508 * 109.47057 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47244 * 299.99492 * 9 7 5 13 13 N 1.46502 * 109.47369 * 65.00192 * 3 2 1 14 14 C 1.34784 * 119.99545 * 275.00017 * 13 3 2 15 15 O 1.21280 * 119.99921 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99856 * 179.97438 * 14 13 3 17 17 H 1.09006 * 110.88283 * 62.35690 * 16 14 13 18 18 C 1.54626 * 110.97077 * 298.54858 * 16 14 13 19 19 C 1.51284 * 104.19264 * 217.08562 * 18 16 14 20 20 O 1.21282 * 124.93790 * 196.23015 * 19 18 16 21 21 N 1.34414 * 110.11916 * 16.25017 * 19 18 16 22 22 C 1.46498 * 124.35144 * 180.41151 * 21 19 18 23 23 C 1.50702 * 109.47339 * 90.02020 * 22 21 19 24 24 C 1.34512 * 125.79146 * 89.99984 * 23 22 21 25 25 C 1.41376 * 106.84688 * 179.75198 * 24 23 22 26 26 C 1.34517 * 106.83881 * 0.37683 * 25 24 23 27 27 O 1.34305 * 125.78962 * 269.98207 * 23 22 21 28 28 C 1.46760 * 111.29882 * 0.66982 * 21 19 18 29 29 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46960 * 300.00312 * 1 2 3 31 31 H 1.09003 * 109.47282 * 60.00146 * 1 2 3 32 32 H 1.08993 * 109.47261 * 239.99655 * 2 1 3 33 33 H 1.09001 * 109.46778 * 119.99731 * 2 1 3 34 34 H 0.96990 * 120.00204 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00403 * 94.99809 * 13 3 2 36 36 H 1.08995 * 110.49269 * 98.40448 * 18 16 14 37 37 H 1.09001 * 110.59661 * 335.81419 * 18 16 14 38 38 H 1.09002 * 109.46903 * 330.02624 * 22 21 19 39 39 H 1.08998 * 109.47675 * 210.01901 * 22 21 19 40 40 H 1.08006 * 126.57585 * 359.97438 * 24 23 22 41 41 H 1.07998 * 126.58562 * 180.23597 * 25 24 23 42 42 H 1.08002 * 125.79423 * 179.89440 * 26 25 24 43 43 H 1.09007 * 110.24572 * 101.72615 * 28 21 19 44 44 H 1.09000 * 110.24753 * 223.71710 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0049 0.8801 -1.3811 10 1 6.5967 0.1454 -0.2342 11 1 6.3979 0.2157 -2.6498 12 1 6.5004 2.2800 -1.3808 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6326 0.4340 16 6 0.0361 3.3377 2.6547 17 1 0.6886 4.1843 2.8689 18 6 0.0333 2.3305 3.8280 19 6 -1.1465 2.7521 4.6759 20 8 -1.3364 2.4063 5.8228 21 7 -1.9538 3.5652 3.9732 22 6 -3.1843 4.1630 4.4974 23 6 -2.8666 5.4938 5.1293 24 6 -2.8685 6.6833 4.5013 25 6 -2.5218 7.6566 5.4663 26 6 -2.3206 7.0027 6.6245 27 8 -2.5340 5.6933 6.4151 28 6 -1.4475 3.7722 2.6114 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0618 -2.9494 35 1 2.2719 2.1232 1.9978 36 1 0.9592 2.4062 4.3981 37 1 -0.1051 1.3138 3.4602 38 1 -3.6201 3.5005 5.2453 39 1 -3.8937 4.3079 3.6827 40 1 -3.0952 6.8612 3.4604 41 1 -2.4330 8.7207 5.3042 42 1 -2.0398 7.4545 7.5644 43 1 -2.0033 3.1561 1.9045 44 1 -1.5234 4.8243 2.3366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183830031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:56 Heat of formation + Delta-G solvation = -76.696820 kcal Electronic energy + Delta-G solvation = -27116.536173 eV Core-core repulsion = 23227.720145 eV Total energy + Delta-G solvation = -3888.816028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.50254 -41.81272 -40.29188 -37.59573 -36.77645 -34.85865 -34.19911 -33.76447 -32.66868 -30.87884 -28.95096 -28.67770 -27.05624 -25.16371 -24.03118 -22.67294 -21.85621 -21.66416 -20.92683 -20.53102 -19.06367 -18.39490 -18.17377 -17.70267 -17.17213 -16.80368 -16.66753 -16.34451 -16.12055 -15.89606 -15.34359 -14.81812 -14.69804 -14.61495 -14.52934 -14.11212 -13.80214 -13.72437 -13.53910 -13.47647 -13.34030 -13.12093 -12.91572 -12.80873 -12.62793 -12.47747 -12.35496 -12.14093 -11.97560 -11.53830 -11.17742 -11.01021 -10.85292 -10.59010 -10.44427 -9.97922 -9.57924 -9.46729 -8.12865 -6.29280 0.65130 1.39716 1.47764 1.48229 1.55819 1.61691 1.82799 2.04917 2.19378 2.38518 2.62336 3.16936 3.22445 3.38588 3.73931 3.87056 3.89431 4.07385 4.13916 4.28490 4.31154 4.42879 4.53968 4.56992 4.62548 4.63070 4.77395 4.82923 4.90698 4.96776 4.99794 5.12569 5.17437 5.32365 5.36377 5.48660 5.60211 5.61272 5.66732 5.85247 5.91334 5.96768 6.22331 6.23100 6.79388 6.98974 7.02932 7.37693 7.60871 8.91864 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022173 B = 0.002757 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.513620 B =10153.723774 C =10463.137965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.701 5.701 14 C 0.515 3.485 15 O -0.576 6.576 16 C -0.110 4.110 17 H 0.138 0.862 18 C -0.138 4.138 19 C 0.518 3.482 20 O -0.567 6.567 21 N -0.610 5.610 22 C 0.202 3.798 23 C -0.057 4.057 24 C -0.193 4.193 25 C -0.228 4.228 26 C -0.043 4.043 27 O -0.197 6.197 28 C 0.123 3.877 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.539 11.925 14.043 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.349 5.349 14 C 0.300 3.700 15 O -0.457 6.457 16 C -0.131 4.131 17 H 0.156 0.844 18 C -0.178 4.178 19 C 0.307 3.693 20 O -0.446 6.446 21 N -0.342 5.342 22 C 0.081 3.919 23 C -0.108 4.108 24 C -0.213 4.213 25 C -0.247 4.247 26 C -0.111 4.111 27 O -0.093 6.093 28 C 0.001 3.999 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.147 0.853 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.163 0.837 40 H 0.184 0.816 41 H 0.187 0.813 42 H 0.246 0.754 43 H 0.105 0.895 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.209 11.403 14.010 21.259 hybrid contribution 1.243 0.065 -0.252 1.270 sum -9.966 11.468 13.758 20.497 Atomic orbital electron populations 1.21679 0.96804 0.99052 1.00486 1.21793 0.93883 0.99294 1.01192 1.18339 0.93354 0.89121 0.81529 0.97885 1.21579 0.91736 1.38725 1.06506 0.91029 1.25700 1.02854 0.94547 0.95203 1.70030 1.36951 1.38399 1.09879 0.85513 0.79722 0.78405 0.77383 1.19169 1.21496 1.19646 1.46234 1.15529 1.55645 1.17538 1.20432 0.81892 0.78505 0.89134 1.90683 1.52175 1.60917 1.41911 1.22211 0.98936 0.99981 0.92002 0.84385 1.22336 0.99089 1.00789 0.95613 1.21178 0.84833 0.77412 0.85868 1.90709 1.76542 1.58925 1.18428 1.48453 1.24621 1.47162 1.14013 1.19891 0.85530 0.87289 0.99203 1.23109 1.07044 0.98372 0.82227 1.21980 1.06032 0.91420 1.01892 1.22209 1.07527 1.01922 0.92992 1.24813 1.04235 0.79711 1.02336 1.84088 1.67532 1.28634 1.29046 1.22061 0.92098 1.03884 0.81873 0.94041 0.93345 0.95296 0.91300 0.94168 0.92709 0.76113 0.85325 0.87379 0.89147 0.83707 0.81561 0.81330 0.75356 0.89508 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.52 71.98 0.61 -4.51 16 2 C -0.12 -5.68 5.45 30.59 0.17 -5.52 16 3 C 0.28 13.27 2.24 44.25 0.10 13.37 16 4 H 0.00 0.18 7.58 -2.38 -0.02 0.17 16 5 C -0.55 -27.40 8.73 25.60 0.22 -27.17 16 6 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -50.67 11.29 21.45 0.24 -50.42 16 9 Si 0.96 40.80 29.54 68.60 2.03 42.83 16 10 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 13 N -0.70 -25.23 4.97 -446.08 -2.22 -27.44 16 14 C 0.51 16.77 5.64 87.65 0.49 17.26 16 15 O -0.58 -23.07 12.71 -3.03 -0.04 -23.11 16 16 C -0.11 -2.44 3.56 -10.42 -0.04 -2.47 16 17 H 0.14 2.46 8.14 -2.38 -0.02 2.44 16 18 C -0.14 -3.05 6.36 30.59 0.19 -2.85 16 19 C 0.52 13.70 8.02 87.90 0.70 14.41 16 20 O -0.57 -19.34 17.59 -3.04 -0.05 -19.40 16 21 N -0.61 -13.12 2.91 -821.97 -2.40 -15.51 16 22 C 0.20 3.69 6.46 85.63 0.55 4.25 16 23 C -0.06 -1.16 6.90 24.83 0.17 -0.99 16 24 C -0.19 -3.32 10.81 22.19 0.24 -3.08 16 25 C -0.23 -3.62 10.91 22.19 0.24 -3.37 16 26 C -0.04 -0.73 12.09 66.97 0.81 0.08 16 27 O -0.20 -4.65 10.65 -2.58 -0.03 -4.67 16 28 C 0.12 2.51 6.65 86.89 0.58 3.09 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.88 5.65 -2.39 -0.01 1.87 16 31 H 0.03 1.30 7.85 -2.39 -0.02 1.28 16 32 H 0.07 3.65 5.95 -2.39 -0.01 3.64 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.26 13.99 8.31 -92.72 -0.77 13.22 16 35 H 0.40 12.21 8.54 -92.71 -0.79 11.41 16 36 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.11 2.54 7.89 -2.39 -0.02 2.52 16 38 H 0.09 1.82 7.92 -2.39 -0.02 1.80 16 39 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 42 H 0.23 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.09 2.02 7.07 -2.38 -0.02 2.00 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -70.80 366.14 3.27 -67.53 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.23 Total: 26.39 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.50 Total: 3.81 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -4.37 Total: -93.38 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.12 Total: -47.18 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -70.80 3.27 -67.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183830031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.166 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds