Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 H 1.09002 * 109.47070 * 55.00009 * 3 2 1 5 5 C 1.50703 * 109.46966 * 174.99919 * 3 2 1 6 6 H 1.07996 * 119.99751 * 120.00006 * 5 3 2 7 7 C 1.37877 * 120.00001 * 300.00469 * 5 3 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47171 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.46632 * 209.99795 * 9 7 5 12 12 H 1.48494 * 109.47053 * 329.99231 * 9 7 5 13 13 N 1.46505 * 109.47411 * 294.99930 * 3 2 1 14 14 C 1.34769 * 119.99686 * 84.99974 * 13 3 2 15 15 O 1.21275 * 120.00678 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99690 * 179.97438 * 14 13 3 17 17 H 1.09001 * 110.85965 * 303.79594 * 16 14 13 18 18 C 1.54632 * 110.97006 * 67.62450 * 16 14 13 19 19 C 1.51282 * 104.19704 * 142.91663 * 18 16 14 20 20 O 1.21279 * 124.93868 * 163.75096 * 19 18 16 21 21 N 1.34418 * 110.11634 * 343.74541 * 19 18 16 22 22 C 1.46500 * 124.35065 * 179.61248 * 21 19 18 23 23 C 1.50690 * 109.47091 * 269.97996 * 22 21 19 24 24 C 1.34519 * 125.79297 * 89.99867 * 23 22 21 25 25 C 1.41382 * 106.84258 * 179.97438 * 24 23 22 26 26 C 1.34514 * 106.84271 * 0.02562 * 25 24 23 27 27 O 1.34304 * 108.41840 * 359.73026 * 26 25 24 28 28 C 1.46765 * 111.29828 * 359.59705 * 21 19 18 29 29 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47306 * 299.99810 * 1 2 3 31 31 H 1.09000 * 109.46927 * 59.99869 * 1 2 3 32 32 H 1.09000 * 109.47306 * 240.00190 * 2 1 3 33 33 H 1.08996 * 109.47287 * 119.99816 * 2 1 3 34 34 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99634 * 265.00306 * 13 3 2 36 36 H 1.09006 * 110.48385 * 261.59564 * 18 16 14 37 37 H 1.09003 * 110.48863 * 24.23654 * 18 16 14 38 38 H 1.09000 * 109.46601 * 29.97885 * 22 21 19 39 39 H 1.09001 * 109.46729 * 149.97423 * 22 21 19 40 40 H 1.08001 * 126.57745 * 0.03985 * 24 23 22 41 41 H 1.07998 * 126.57759 * 179.97438 * 25 24 23 42 42 H 1.07989 * 125.78918 * 179.97438 * 26 25 24 43 43 H 1.09005 * 110.24406 * 258.01068 * 28 21 19 44 44 H 1.08995 * 110.24581 * 136.01638 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.4416 2.1143 2.0849 11 1 6.4395 -0.3097 2.1549 12 1 6.6135 0.8417 0.0279 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4342 16 6 0.0366 3.3387 -2.6544 17 1 0.7523 4.1157 -2.9232 18 6 -0.1154 2.3065 -3.7957 19 6 -1.2919 2.8135 -4.6003 20 8 -1.5682 2.4579 -5.7263 21 7 -1.9865 3.7154 -3.8854 22 6 -3.1818 4.4105 -4.3695 23 6 -2.7760 5.6895 -5.0551 24 6 -2.4894 5.8247 -6.3625 25 6 -2.1613 7.1839 -6.5716 26 6 -2.2665 7.7980 -5.3794 27 8 -2.6445 6.8892 -4.4658 28 6 -1.3937 3.9140 -2.5576 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0611 2.9499 35 1 2.2719 2.1232 -1.9978 36 1 0.7847 2.2818 -4.4101 37 1 -0.3285 1.3176 -3.3899 38 1 -3.7123 3.7720 -5.0759 39 1 -3.8342 4.6408 -3.5272 40 1 -2.5076 5.0447 -7.1093 41 1 -1.8795 7.6412 -7.5085 42 1 -2.0824 8.8451 -5.1901 43 1 -1.9672 3.3742 -1.8040 44 1 -1.3575 4.9762 -2.3157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183830047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = -56.426456 kcal Electronic energy + Delta-G solvation = -27104.301939 eV Core-core repulsion = 23216.364900 eV Total energy + Delta-G solvation = -3887.937039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -42.76410 -40.72209 -38.90888 -36.40590 -35.11892 -33.88040 -33.03384 -32.38578 -31.02866 -29.94492 -27.73398 -27.14115 -26.14028 -23.58872 -22.63011 -21.90672 -21.01787 -20.13389 -19.57254 -19.38282 -17.88477 -17.34138 -17.14295 -16.37901 -15.93418 -15.51793 -15.49324 -15.13813 -14.72701 -14.48929 -14.19379 -13.66043 -13.56036 -13.40354 -13.17863 -13.02868 -12.92259 -12.74495 -12.62746 -12.04544 -11.95474 -11.65996 -11.45186 -11.30639 -11.24461 -10.99755 -10.88711 -10.36814 -10.23334 -10.15828 -10.03269 -9.68187 -9.16137 -9.10410 -8.99484 -8.71072 -8.54568 -7.92391 -6.17033 -4.26699 1.39920 2.30989 2.43238 2.80396 2.99302 3.19439 3.21804 3.28975 3.30380 3.84624 4.24575 4.31148 4.39967 4.46040 4.73717 4.82903 4.89779 4.96683 5.02632 5.14864 5.19015 5.44360 5.46256 5.57560 5.60544 5.72025 5.75000 5.85283 5.93792 6.25655 6.27213 6.33983 6.39442 6.59770 6.83163 6.97139 6.97625 7.13126 7.29228 7.36114 7.55982 7.66559 7.83997 8.00435 8.12718 8.56428 8.70864 9.01109 9.40759 10.88211 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.002778 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.799467 B =10077.372394 C =10477.385565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.513 3.487 15 O -0.543 6.543 16 C -0.125 4.125 17 H 0.110 0.890 18 C -0.142 4.142 19 C 0.525 3.475 20 O -0.530 6.530 21 N -0.617 5.617 22 C 0.208 3.792 23 C -0.039 4.039 24 C -0.186 4.186 25 C -0.218 4.218 26 C -0.037 4.037 27 O -0.173 6.173 28 C 0.117 3.883 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.390 0.610 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.202 0.798 43 H 0.098 0.902 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 10.450 -13.543 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.349 5.349 14 C 0.296 3.704 15 O -0.422 6.422 16 C -0.148 4.148 17 H 0.129 0.871 18 C -0.183 4.183 19 C 0.313 3.687 20 O -0.407 6.407 21 N -0.350 5.350 22 C 0.086 3.914 23 C -0.090 4.090 24 C -0.206 4.206 25 C -0.237 4.237 26 C -0.105 4.105 27 O -0.069 6.069 28 C -0.006 4.006 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.219 0.781 43 H 0.116 0.884 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.234 10.185 -12.951 19.942 hybrid contribution 1.522 0.223 -0.509 1.620 sum -9.712 10.408 -13.460 19.592 Atomic orbital electron populations 1.21840 0.98353 0.98114 1.01112 1.21942 0.92579 0.99778 1.02402 1.18820 0.94268 0.89202 0.80832 0.93196 1.21221 0.90679 1.39152 1.06339 0.92062 1.24880 0.98608 0.94746 0.95388 1.69887 1.35174 1.37515 1.09326 0.86461 0.84841 0.77663 0.78226 1.20575 1.21072 1.19830 1.46486 1.14323 1.55439 1.18652 1.19763 0.83086 0.79522 0.88003 1.90684 1.51372 1.60010 1.40129 1.22292 0.98255 0.98976 0.95237 0.87150 1.22324 0.98669 1.00609 0.96679 1.20908 0.84016 0.78163 0.85565 1.90708 1.71616 1.60514 1.17820 1.48403 1.28480 1.41622 1.16543 1.19650 0.86289 0.85856 0.99585 1.22938 1.07126 0.86219 0.92756 1.21733 1.05268 0.97419 0.96184 1.21877 1.08026 0.94550 0.99259 1.24073 1.03882 0.95038 0.87500 1.84032 1.67160 1.17081 1.38592 1.22071 0.92617 1.02267 0.83618 0.95810 0.93107 0.94424 0.94952 0.88255 0.92518 0.77802 0.87178 0.86961 0.86762 0.88279 0.83297 0.83469 0.78100 0.88364 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.52 37.16 0.32 -2.55 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.36 2.24 -69.08 -0.15 6.20 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.48 8.73 -34.44 -0.30 -13.78 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.32 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.70 -13.02 5.02 -54.93 -0.28 -13.30 16 14 C 0.51 8.75 5.63 -10.99 -0.06 8.69 16 15 O -0.54 -11.08 12.64 5.56 0.07 -11.01 16 16 C -0.13 -1.57 3.54 -90.14 -0.32 -1.89 16 17 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -1.70 6.41 -26.74 -0.17 -1.87 16 19 C 0.53 7.03 8.02 -10.86 -0.09 6.94 16 20 O -0.53 -8.56 17.59 5.56 0.10 -8.46 16 21 N -0.62 -7.17 2.92 -173.79 -0.51 -7.68 16 22 C 0.21 2.05 6.46 -5.20 -0.03 2.02 16 23 C -0.04 -0.43 6.90 -35.63 -0.25 -0.68 16 24 C -0.19 -2.06 10.81 -39.70 -0.43 -2.48 16 25 C -0.22 -2.07 10.91 -39.70 -0.43 -2.51 16 26 C -0.04 -0.33 12.09 29.42 0.36 0.03 16 27 O -0.17 -1.90 10.65 5.69 0.06 -1.84 16 28 C 0.12 1.38 6.71 -3.12 -0.02 1.36 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 31 H 0.04 0.74 5.65 -51.93 -0.29 0.45 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.39 6.26 8.54 -40.82 -0.35 5.91 16 36 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.11 1.41 7.89 -51.93 -0.41 1.00 16 38 H 0.11 1.06 7.92 -51.93 -0.41 0.65 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.10 1.28 6.96 -51.93 -0.36 0.92 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -31.24 366.09 -7.54 -38.78 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.28 Total: 8.25 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.83 Total: -1.95 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.16 Total: -44.29 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.23 Total: -21.31 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.24 -7.54 -38.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183830047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.649 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds