Wall clock time and date at job start Tue Mar 31 2020 12:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 H 1.09002 * 109.47070 * 55.00009 * 3 2 1 5 5 C 1.50703 * 109.46966 * 174.99919 * 3 2 1 6 6 H 1.07996 * 119.99751 * 120.00006 * 5 3 2 7 7 C 1.37877 * 120.00001 * 300.00469 * 5 3 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47171 * 89.99544 * 9 7 5 11 11 H 1.48500 * 109.46632 * 209.99795 * 9 7 5 12 12 H 1.48494 * 109.47053 * 329.99231 * 9 7 5 13 13 N 1.46505 * 109.47411 * 294.99930 * 3 2 1 14 14 C 1.34769 * 119.99686 * 84.99974 * 13 3 2 15 15 O 1.21275 * 120.00678 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99690 * 179.97438 * 14 13 3 17 17 H 1.09001 * 110.85965 * 303.79594 * 16 14 13 18 18 C 1.54632 * 110.97006 * 67.62450 * 16 14 13 19 19 C 1.51282 * 104.19704 * 142.91663 * 18 16 14 20 20 O 1.21279 * 124.93868 * 163.75096 * 19 18 16 21 21 N 1.34418 * 110.11634 * 343.74541 * 19 18 16 22 22 C 1.46500 * 124.35065 * 179.61248 * 21 19 18 23 23 C 1.50690 * 109.47091 * 269.97996 * 22 21 19 24 24 C 1.34519 * 125.79297 * 89.99867 * 23 22 21 25 25 C 1.41382 * 106.84258 * 179.97438 * 24 23 22 26 26 C 1.34514 * 106.84271 * 0.02562 * 25 24 23 27 27 O 1.34304 * 108.41840 * 359.73026 * 26 25 24 28 28 C 1.46765 * 111.29828 * 359.59705 * 21 19 18 29 29 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47306 * 299.99810 * 1 2 3 31 31 H 1.09000 * 109.46927 * 59.99869 * 1 2 3 32 32 H 1.09000 * 109.47306 * 240.00190 * 2 1 3 33 33 H 1.08996 * 109.47287 * 119.99816 * 2 1 3 34 34 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99634 * 265.00306 * 13 3 2 36 36 H 1.09006 * 110.48385 * 261.59564 * 18 16 14 37 37 H 1.09003 * 110.48863 * 24.23654 * 18 16 14 38 38 H 1.09000 * 109.46601 * 29.97885 * 22 21 19 39 39 H 1.09001 * 109.46729 * 149.97423 * 22 21 19 40 40 H 1.08001 * 126.57745 * 0.03985 * 24 23 22 41 41 H 1.07998 * 126.57759 * 179.97438 * 25 24 23 42 42 H 1.07989 * 125.78918 * 179.97438 * 26 25 24 43 43 H 1.09005 * 110.24406 * 258.01068 * 28 21 19 44 44 H 1.08995 * 110.24581 * 136.01638 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.4416 2.1143 2.0849 11 1 6.4395 -0.3097 2.1549 12 1 6.6135 0.8417 0.0279 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4342 16 6 0.0366 3.3387 -2.6544 17 1 0.7523 4.1157 -2.9232 18 6 -0.1154 2.3065 -3.7957 19 6 -1.2919 2.8135 -4.6003 20 8 -1.5682 2.4579 -5.7263 21 7 -1.9865 3.7154 -3.8854 22 6 -3.1818 4.4105 -4.3695 23 6 -2.7760 5.6895 -5.0551 24 6 -2.4894 5.8247 -6.3625 25 6 -2.1613 7.1839 -6.5716 26 6 -2.2665 7.7980 -5.3794 27 8 -2.6445 6.8892 -4.4658 28 6 -1.3937 3.9140 -2.5576 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0611 2.9499 35 1 2.2719 2.1232 -1.9978 36 1 0.7847 2.2818 -4.4101 37 1 -0.3285 1.3176 -3.3899 38 1 -3.7123 3.7720 -5.0759 39 1 -3.8342 4.6408 -3.5272 40 1 -2.5076 5.0447 -7.1093 41 1 -1.8795 7.6412 -7.5085 42 1 -2.0824 8.8451 -5.1901 43 1 -1.9672 3.3742 -1.8040 44 1 -1.3575 4.9762 -2.3157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183830047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:04 Heat of formation + Delta-G solvation = -76.208740 kcal Electronic energy + Delta-G solvation = -27105.159763 eV Core-core repulsion = 23216.364900 eV Total energy + Delta-G solvation = -3888.794863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.51498 -41.82416 -40.30231 -37.58268 -36.77390 -34.86243 -34.21821 -33.77692 -32.68148 -30.89159 -28.97389 -28.68364 -27.06012 -25.18984 -24.04651 -22.67276 -21.86057 -21.67501 -20.94739 -20.53909 -19.08200 -18.40289 -18.18597 -17.71906 -17.17647 -16.78701 -16.65168 -16.36391 -16.11745 -15.88220 -15.31694 -14.73151 -14.71819 -14.63600 -14.48831 -14.41084 -13.78318 -13.71054 -13.55056 -13.47622 -13.37002 -13.13300 -12.89074 -12.81047 -12.66848 -12.50781 -12.31796 -12.11642 -11.98232 -11.53823 -11.18300 -11.00898 -10.88440 -10.60260 -10.45344 -9.98978 -9.58863 -9.47856 -8.13245 -6.29599 0.63117 1.39196 1.46591 1.47766 1.57274 1.59654 1.81113 2.00578 2.16142 2.37861 2.61090 3.16738 3.23201 3.38406 3.71405 3.87129 3.88391 4.06416 4.10818 4.28149 4.31326 4.42431 4.51870 4.55942 4.61578 4.62931 4.77510 4.82715 4.87973 4.94783 4.99061 5.12126 5.15893 5.31782 5.33890 5.48304 5.54704 5.60976 5.66397 5.84844 5.90508 5.96445 6.18797 6.21933 6.79279 6.98415 7.02239 7.37403 7.60424 8.91738 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.002778 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.799467 B =10077.372394 C =10477.385565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.965 3.035 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.261 1.261 13 N -0.700 5.700 14 C 0.514 3.486 15 O -0.577 6.577 16 C -0.110 4.110 17 H 0.137 0.863 18 C -0.137 4.137 19 C 0.522 3.478 20 O -0.562 6.562 21 N -0.610 5.610 22 C 0.204 3.796 23 C -0.052 4.052 24 C -0.202 4.202 25 C -0.233 4.233 26 C -0.031 4.031 27 O -0.185 6.185 28 C 0.122 3.878 29 H 0.041 0.959 30 H 0.027 0.973 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.166 0.834 42 H 0.238 0.762 43 H 0.086 0.914 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 11.776 -15.060 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.300 3.700 15 O -0.458 6.458 16 C -0.132 4.132 17 H 0.155 0.845 18 C -0.177 4.177 19 C 0.312 3.688 20 O -0.441 6.441 21 N -0.342 5.342 22 C 0.083 3.917 23 C -0.103 4.103 24 C -0.222 4.222 25 C -0.251 4.251 26 C -0.099 4.099 27 O -0.081 6.081 28 C -0.001 4.001 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.183 0.817 42 H 0.255 0.745 43 H 0.104 0.896 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.613 11.537 -14.498 21.353 hybrid contribution 1.258 -0.122 -0.041 1.265 sum -9.354 11.416 -14.539 20.717 Atomic orbital electron populations 1.21682 0.96854 0.99063 1.00449 1.21790 0.93831 0.99261 1.01240 1.18352 0.93415 0.89147 0.81501 0.97985 1.21602 0.91675 1.38607 1.06505 0.90973 1.25711 1.02891 0.94551 0.95215 1.70040 1.36900 1.38498 1.09870 0.85450 0.79696 0.77277 0.78544 1.20538 1.21303 1.18496 1.46218 1.15451 1.55623 1.17545 1.20419 0.81908 0.78555 0.89112 1.90681 1.52193 1.60981 1.41943 1.22165 0.99213 0.99285 0.92503 0.84529 1.22327 0.99126 0.99942 0.96295 1.21086 0.84345 0.78186 0.85233 1.90696 1.72530 1.61661 1.19177 1.48440 1.28639 1.41102 1.16067 1.19833 0.85817 0.85576 1.00469 1.22987 1.07855 0.86601 0.92818 1.21889 1.05710 0.98261 0.96350 1.22172 1.08441 0.93998 1.00533 1.24825 1.02068 0.96099 0.86865 1.84030 1.67443 1.17321 1.39306 1.22006 0.91940 1.02822 0.83344 0.93983 0.95404 0.93350 0.94043 0.91309 0.92722 0.76042 0.85091 0.87444 0.86521 0.86229 0.83983 0.81688 0.74544 0.89579 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.52 71.98 0.61 -4.56 16 2 C -0.12 -5.68 5.45 30.60 0.17 -5.51 16 3 C 0.28 13.29 2.24 44.25 0.10 13.39 16 4 H 0.00 0.13 7.58 -2.39 -0.02 0.11 16 5 C -0.55 -27.34 8.73 25.60 0.22 -27.12 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.91 -50.80 11.29 21.45 0.24 -50.56 16 9 Si 0.96 40.83 29.54 68.60 2.03 42.86 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 13 N -0.70 -25.32 5.02 -446.09 -2.24 -27.56 16 14 C 0.51 17.03 5.63 87.66 0.49 17.52 16 15 O -0.58 -23.61 12.64 -3.01 -0.04 -23.64 16 16 C -0.11 -2.50 3.54 -10.48 -0.04 -2.54 16 17 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 18 C -0.14 -2.97 6.41 30.59 0.20 -2.77 16 19 C 0.52 13.21 8.02 87.90 0.71 13.92 16 20 O -0.56 -17.67 17.59 -3.02 -0.05 -17.72 16 21 N -0.61 -13.22 2.92 -822.34 -2.40 -15.62 16 22 C 0.20 3.77 6.46 85.63 0.55 4.32 16 23 C -0.05 -1.07 6.90 24.83 0.17 -0.89 16 24 C -0.20 -4.28 10.81 22.19 0.24 -4.04 16 25 C -0.23 -3.99 10.91 22.19 0.24 -3.75 16 26 C -0.03 -0.47 12.09 66.97 0.81 0.34 16 27 O -0.18 -3.68 10.65 -2.54 -0.03 -3.71 16 28 C 0.12 2.65 6.71 86.83 0.58 3.24 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.26 7.85 -2.39 -0.02 1.24 16 31 H 0.05 1.89 5.65 -2.39 -0.01 1.88 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 3.65 5.95 -2.39 -0.01 3.64 16 34 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 35 H 0.40 12.21 8.54 -92.71 -0.79 11.41 16 36 H 0.13 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.11 2.50 7.89 -2.39 -0.02 2.48 16 38 H 0.12 2.08 7.92 -2.39 -0.02 2.06 16 39 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 42 H 0.24 1.53 8.06 -2.92 -0.02 1.51 16 43 H 0.09 2.16 6.96 -2.38 -0.02 2.14 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -68.75 366.09 3.25 -65.50 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.23 Total: 27.61 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.51 Total: 2.85 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -4.40 Total: -93.74 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -0.12 Total: -45.08 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -68.75 3.25 -65.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183830047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.709 kcal (2) G-P(sol) polarization free energy of solvation -68.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds