Wall clock time and date at job start Tue Mar 31 2020 12:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47082 * 90.00754 * 9 7 5 11 11 H 1.48501 * 109.47111 * 210.00281 * 9 7 5 12 12 H 1.48494 * 109.47432 * 330.00650 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 O 1.42898 * 109.47180 * 179.97438 * 17 16 14 19 19 C 1.35916 * 116.99793 * 179.97438 * 18 17 16 20 20 C 1.38851 * 119.98688 * 359.72883 * 19 18 17 21 21 C 1.38241 * 120.23792 * 179.76243 * 20 19 18 22 22 C 1.38009 * 120.20602 * 0.51178 * 21 20 19 23 23 C 1.39558 * 119.96619 * 359.74239 * 22 21 20 24 24 C 1.47857 * 120.11675 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00279 * 0.02562 * 24 23 22 26 26 O 1.21561 * 119.99817 * 180.02562 * 24 23 22 27 27 C 1.38449 * 119.98023 * 179.97438 * 19 18 17 28 28 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 30 30 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 31 31 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 32 32 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 33 33 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 38 38 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 39 39 H 1.08007 * 119.88026 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.89479 * 180.25252 * 21 20 19 41 41 H 1.07999 * 120.01587 * 179.77039 * 22 21 20 42 42 H 0.96998 * 119.99912 * 0.02562 * 25 24 23 43 43 H 0.96995 * 119.99933 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.10597 * 359.96363 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1543 12 1 6.6131 0.8394 0.0268 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 8 -1.7671 4.5186 -3.7477 19 6 -3.0105 5.0649 -3.7988 20 6 -3.8491 4.9861 -2.6949 21 6 -5.1130 5.5443 -2.7396 22 6 -5.5537 6.1745 -3.8856 23 6 -4.7199 6.2540 -5.0019 24 6 -5.1888 6.9279 -6.2316 25 7 -6.4232 7.4671 -6.2757 26 8 -4.4610 6.9955 -7.2029 27 6 -3.4423 5.6953 -4.9534 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8294 -0.0619 2.9494 34 1 2.2719 2.1232 -1.9977 35 1 0.7225 4.1501 -2.8716 36 1 0.0680 2.6061 -3.4682 37 1 -2.0754 3.0670 -2.3098 38 1 -1.4210 4.6110 -1.7131 39 1 -3.5111 4.4907 -1.7967 40 1 -5.7592 5.4834 -1.8763 41 1 -6.5431 6.6062 -3.9184 42 1 -7.0038 7.4135 -5.5006 43 1 -6.7309 7.9088 -7.0826 44 1 -2.7923 5.7543 -5.8138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183841118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:33 Heat of formation + Delta-G solvation = -100.176388 kcal Electronic energy + Delta-G solvation = -25714.896576 eV Core-core repulsion = 21825.062398 eV Total energy + Delta-G solvation = -3889.834178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -40.69484 -39.63450 -39.01368 -37.31776 -35.18492 -34.18151 -32.54545 -32.09426 -31.37922 -30.78588 -29.69963 -27.09643 -25.17536 -23.73374 -22.80331 -22.68854 -20.77661 -20.14193 -19.39273 -18.97384 -17.68225 -17.09083 -16.67149 -16.39949 -16.31850 -15.79244 -15.38999 -15.22579 -15.10367 -14.68906 -14.50804 -14.18589 -14.01973 -13.48925 -13.32656 -12.97119 -12.71604 -12.35708 -12.28861 -11.91487 -11.78071 -11.46031 -11.29170 -11.12413 -10.99399 -10.88113 -10.80749 -10.44601 -10.35801 -10.22087 -10.13038 -9.67652 -9.35555 -9.14426 -9.07906 -8.53910 -8.52085 -7.89906 -6.16146 -4.25710 0.48913 1.09345 2.53570 2.75115 3.20682 3.22261 3.28044 3.29589 3.31715 3.54268 4.15356 4.36229 4.40022 4.47959 4.65715 4.80595 4.83776 4.98828 5.07822 5.15372 5.18851 5.32458 5.55315 5.67902 5.75180 5.78496 5.87567 6.00824 6.06056 6.27742 6.34437 6.39181 6.40387 6.60702 6.89740 6.98873 7.13707 7.19402 7.30932 7.38270 7.57175 7.67991 7.84518 7.85125 8.13680 8.58874 8.72304 9.04303 9.41688 10.89142 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.001991 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.723522 B =14060.164973 C =14532.625220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.506 3.494 15 O -0.553 6.553 16 C -0.143 4.143 17 C 0.076 3.924 18 O -0.314 6.314 19 C 0.132 3.868 20 C -0.180 4.180 21 C -0.086 4.086 22 C -0.129 4.129 23 C -0.106 4.106 24 C 0.566 3.434 25 N -0.851 5.851 26 O -0.537 6.537 27 C -0.094 4.094 28 H 0.023 0.977 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.265 0.735 34 H 0.390 0.610 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.402 0.598 43 H 0.405 0.595 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.310 10.655 -12.013 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.291 3.709 15 O -0.433 6.433 16 C -0.184 4.184 17 C 0.001 3.999 18 O -0.228 6.228 19 C 0.086 3.914 20 C -0.199 4.199 21 C -0.104 4.104 22 C -0.148 4.148 23 C -0.109 4.109 24 C 0.352 3.648 25 N -0.415 5.415 26 O -0.414 6.414 27 C -0.114 4.114 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.223 0.777 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.231 0.769 43 H 0.236 0.764 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.057 10.447 -11.807 23.971 hybrid contribution 0.782 0.041 0.099 0.789 sum -17.275 10.489 -11.708 23.357 Atomic orbital electron populations 1.21838 0.98378 0.98067 1.01129 1.21940 0.92591 0.99797 1.02364 1.18810 0.94270 0.89196 0.80902 0.93256 1.21230 0.90683 1.39102 1.06335 0.92046 1.24888 0.98660 0.94762 0.95391 1.69891 1.35163 1.37535 1.09344 0.86448 0.84784 0.77655 0.78212 1.20566 1.21066 1.19843 1.46481 1.14467 1.55545 1.18708 1.19979 0.83076 0.79461 0.88406 1.90682 1.51487 1.60306 1.40781 1.21539 0.96052 1.02224 0.98550 1.22538 0.96104 0.97151 0.84122 1.86024 1.28595 1.69601 1.38566 1.18846 0.84853 0.93786 0.93873 1.21667 0.95465 1.03705 0.99036 1.20908 0.95334 0.96246 0.97873 1.21121 0.99398 1.01386 0.92936 1.19547 0.95100 1.02064 0.94193 1.18234 0.81538 0.77721 0.87322 1.43728 1.16711 1.61015 1.20035 1.90838 1.55086 1.58623 1.36835 1.20466 0.95496 0.98097 0.97316 0.95831 0.93158 0.94370 0.94989 0.88237 0.92537 0.77736 0.88251 0.88331 0.90884 0.90847 0.84270 0.84932 0.85611 0.76868 0.76371 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.54 2.24 -69.08 -0.15 6.39 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.24 11.29 55.43 0.63 -23.61 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -13.74 5.02 -54.93 -0.28 -14.01 16 14 C 0.51 9.14 6.40 -10.98 -0.07 9.07 16 15 O -0.55 -11.75 13.12 5.55 0.07 -11.68 16 16 C -0.14 -1.89 6.07 -27.88 -0.17 -2.06 16 17 C 0.08 0.98 4.03 37.16 0.15 1.13 16 18 O -0.31 -4.04 10.13 -19.47 -0.20 -4.24 16 19 C 0.13 1.57 6.68 -39.28 -0.26 1.31 16 20 C -0.18 -1.84 9.03 -39.35 -0.36 -2.20 16 21 C -0.09 -0.69 10.03 -39.66 -0.40 -1.08 16 22 C -0.13 -0.95 9.54 -39.17 -0.37 -1.32 16 23 C -0.11 -1.03 5.87 -104.99 -0.62 -1.65 16 24 C 0.57 5.59 8.05 -12.33 -0.10 5.49 16 25 N -0.85 -4.39 8.82 30.53 0.27 -4.12 16 26 O -0.54 -7.51 17.18 5.31 0.09 -7.42 16 27 C -0.09 -1.09 9.53 -39.02 -0.37 -1.47 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 30 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.39 6.59 8.54 -40.82 -0.35 6.24 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.95 7.60 -51.93 -0.39 0.55 16 38 H 0.07 0.96 7.63 -51.93 -0.40 0.56 16 39 H 0.14 1.39 6.28 -52.48 -0.33 1.06 16 40 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 41 H 0.13 0.46 6.40 -52.49 -0.34 0.12 16 42 H 0.40 0.90 6.86 -40.82 -0.28 0.62 16 43 H 0.41 1.57 8.93 -40.82 -0.36 1.20 16 44 H 0.14 1.75 7.65 -52.49 -0.40 1.35 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -32.61 365.46 -7.78 -40.39 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.91 Total: 8.50 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.95 Total: -4.60 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.62 Total: -41.74 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.03 Total: -23.33 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.61 -7.78 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183841118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.783 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds