Wall clock time and date at job start Tue Mar 31 2020 12:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47082 * 90.00754 * 9 7 5 11 11 H 1.48501 * 109.47111 * 210.00281 * 9 7 5 12 12 H 1.48494 * 109.47432 * 330.00650 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 O 1.42898 * 109.47180 * 179.97438 * 17 16 14 19 19 C 1.35916 * 116.99793 * 179.97438 * 18 17 16 20 20 C 1.38851 * 119.98688 * 359.72883 * 19 18 17 21 21 C 1.38241 * 120.23792 * 179.76243 * 20 19 18 22 22 C 1.38009 * 120.20602 * 0.51178 * 21 20 19 23 23 C 1.39558 * 119.96619 * 359.74239 * 22 21 20 24 24 C 1.47857 * 120.11675 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00279 * 0.02562 * 24 23 22 26 26 O 1.21561 * 119.99817 * 180.02562 * 24 23 22 27 27 C 1.38449 * 119.98023 * 179.97438 * 19 18 17 28 28 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 30 30 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 31 31 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 32 32 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 33 33 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 38 38 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 39 39 H 1.08007 * 119.88026 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.89479 * 180.25252 * 21 20 19 41 41 H 1.07999 * 120.01587 * 179.77039 * 22 21 20 42 42 H 0.96998 * 119.99912 * 0.02562 * 25 24 23 43 43 H 0.96995 * 119.99933 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.10597 * 359.96363 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1543 12 1 6.6131 0.8394 0.0268 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 8 -1.7671 4.5186 -3.7477 19 6 -3.0105 5.0649 -3.7988 20 6 -3.8491 4.9861 -2.6949 21 6 -5.1130 5.5443 -2.7396 22 6 -5.5537 6.1745 -3.8856 23 6 -4.7199 6.2540 -5.0019 24 6 -5.1888 6.9279 -6.2316 25 7 -6.4232 7.4671 -6.2757 26 8 -4.4610 6.9955 -7.2029 27 6 -3.4423 5.6953 -4.9534 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8294 -0.0619 2.9494 34 1 2.2719 2.1232 -1.9977 35 1 0.7225 4.1501 -2.8716 36 1 0.0680 2.6061 -3.4682 37 1 -2.0754 3.0670 -2.3098 38 1 -1.4210 4.6110 -1.7131 39 1 -3.5111 4.4907 -1.7967 40 1 -5.7592 5.4834 -1.8763 41 1 -6.5431 6.6062 -3.9184 42 1 -7.0038 7.4135 -5.5006 43 1 -6.7309 7.9088 -7.0826 44 1 -2.7923 5.7543 -5.8138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183841118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:32 Heat of formation + Delta-G solvation = -124.418147 kcal Electronic energy + Delta-G solvation = -25715.947778 eV Core-core repulsion = 21825.062398 eV Total energy + Delta-G solvation = -3890.885380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50987 -40.80228 -40.19606 -38.16436 -36.96355 -34.86099 -34.31054 -33.44334 -32.47612 -32.01260 -30.58177 -28.93994 -26.20024 -25.08911 -24.24884 -23.44572 -21.98635 -21.38816 -21.04511 -19.76749 -18.85772 -18.17060 -17.77477 -17.47002 -17.25862 -17.04420 -16.85522 -16.40039 -16.21344 -15.93254 -15.80288 -15.19869 -14.74873 -14.72226 -14.61694 -14.39821 -14.26767 -13.65486 -13.43251 -13.17841 -13.11924 -12.89008 -12.80841 -12.69969 -12.67832 -12.16222 -12.05459 -11.98842 -11.77664 -11.56353 -11.25508 -11.04811 -10.75840 -10.71325 -10.50573 -10.09369 -9.62465 -9.31850 -8.15889 -6.32657 -0.26379 0.36307 1.44845 1.45493 1.55620 1.78492 1.80617 1.83020 2.38522 2.52139 2.80320 2.91369 3.13910 3.65745 3.75236 3.86753 3.95739 4.03144 4.09931 4.15676 4.28801 4.45639 4.51111 4.52779 4.59067 4.74217 4.75189 4.79477 4.89148 5.08364 5.17260 5.25471 5.27865 5.34854 5.45025 5.57465 5.60343 5.63278 5.81103 5.85644 5.93039 6.18430 6.30396 6.39389 6.75696 6.97877 7.25726 7.34236 7.57310 8.89226 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.001991 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.723522 B =14060.164973 C =14532.625220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.262 1.262 13 N -0.704 5.704 14 C 0.505 3.495 15 O -0.587 6.587 16 C -0.130 4.130 17 C 0.083 3.917 18 O -0.325 6.325 19 C 0.108 3.892 20 C -0.188 4.188 21 C -0.082 4.082 22 C -0.110 4.110 23 C -0.115 4.115 24 C 0.563 3.437 25 N -0.823 5.823 26 O -0.588 6.588 27 C -0.114 4.114 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.138 0.862 40 H 0.165 0.835 41 H 0.171 0.829 42 H 0.419 0.581 43 H 0.415 0.585 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.748 11.478 -12.956 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.186 1.186 13 N -0.353 5.353 14 C 0.292 3.708 15 O -0.468 6.468 16 C -0.169 4.169 17 C 0.008 3.992 18 O -0.239 6.239 19 C 0.063 3.937 20 C -0.207 4.207 21 C -0.100 4.100 22 C -0.128 4.128 23 C -0.118 4.118 24 C 0.349 3.651 25 N -0.388 5.388 26 O -0.470 6.470 27 C -0.134 4.134 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.155 0.845 40 H 0.182 0.818 41 H 0.188 0.812 42 H 0.252 0.748 43 H 0.247 0.753 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.549 11.301 -12.773 25.943 hybrid contribution 1.071 -0.145 0.409 1.156 sum -18.477 11.157 -12.365 24.875 Atomic orbital electron populations 1.21678 0.96814 0.99153 1.00389 1.21791 0.93913 0.99160 1.01262 1.18372 0.93533 0.89223 0.81458 0.98141 1.21596 0.91594 1.38802 1.06620 0.91076 1.25743 1.03130 0.94471 0.95142 1.70040 1.36960 1.38360 1.09856 0.85406 0.79388 0.77368 0.78531 1.20500 1.21054 1.18583 1.46243 1.15583 1.55784 1.17682 1.20715 0.81949 0.78542 0.89596 1.90670 1.52308 1.61311 1.42542 1.21414 0.96635 1.02946 0.95932 1.22370 0.95765 0.96902 0.84213 1.85972 1.29589 1.70093 1.38230 1.19000 0.84893 0.95071 0.94731 1.21819 0.96419 1.04048 0.98375 1.21324 0.94605 0.94937 0.99147 1.21572 1.00527 0.99478 0.91266 1.19681 0.94827 1.02101 0.95168 1.18338 0.82382 0.77699 0.86668 1.43516 1.15143 1.59034 1.21136 1.90816 1.56822 1.60861 1.38460 1.20460 0.96561 0.99500 0.96887 0.93734 0.95420 0.93496 0.94117 0.91115 0.92640 0.75991 0.86276 0.86039 0.91271 0.91495 0.84457 0.81750 0.81168 0.74785 0.75272 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.86 5.45 30.60 0.17 -5.69 16 3 C 0.28 13.76 2.24 44.24 0.10 13.86 16 4 H 0.00 0.04 7.58 -2.38 -0.02 0.02 16 5 C -0.55 -28.34 8.73 25.60 0.22 -28.12 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.91 -51.50 11.29 21.45 0.24 -51.25 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.64 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 13 N -0.70 -27.30 5.02 -446.09 -2.24 -29.54 16 14 C 0.50 18.12 6.40 87.66 0.56 18.68 16 15 O -0.59 -25.40 13.12 -3.04 -0.04 -25.44 16 16 C -0.13 -3.26 6.07 29.85 0.18 -3.08 16 17 C 0.08 2.11 4.03 71.98 0.29 2.40 16 18 O -0.32 -8.38 10.13 -92.60 -0.94 -9.31 16 19 C 0.11 2.58 6.68 22.47 0.15 2.73 16 20 C -0.19 -3.66 9.03 22.42 0.20 -3.46 16 21 C -0.08 -1.08 10.03 22.22 0.22 -0.85 16 22 C -0.11 -1.23 9.54 22.53 0.21 -1.02 16 23 C -0.11 -2.09 5.87 -20.10 -0.12 -2.21 16 24 C 0.56 10.50 8.05 86.79 0.70 11.19 16 25 N -0.82 -6.26 8.82 -175.59 -1.55 -7.81 16 26 O -0.59 -16.74 17.18 -3.91 -0.07 -16.80 16 27 C -0.11 -2.71 9.53 22.63 0.22 -2.49 16 28 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.03 1.28 7.85 -2.38 -0.02 1.27 16 30 H 0.05 1.92 5.64 -2.39 -0.01 1.90 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 3.83 5.95 -2.39 -0.01 3.81 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.41 13.22 8.54 -92.71 -0.79 12.42 16 35 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.07 1.79 7.60 -2.38 -0.02 1.77 16 38 H 0.07 1.76 7.63 -2.39 -0.02 1.74 16 39 H 0.14 2.68 6.28 -2.91 -0.02 2.66 16 40 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.17 0.30 6.40 -2.91 -0.02 0.29 16 42 H 0.42 0.16 6.86 -92.71 -0.64 -0.48 16 43 H 0.41 2.17 8.93 -92.71 -0.83 1.35 16 44 H 0.13 3.32 7.65 -2.91 -0.02 3.30 16 Total: -1.00 -74.46 365.46 0.41 -74.05 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -1.19 Total: 23.97 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 4.17 Total: -1.51 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -3.55 Total: -88.60 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -1.05 Total: -51.56 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -74.46 0.41 -74.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183841118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.367 kcal (2) G-P(sol) polarization free energy of solvation -74.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds