Wall clock time and date at job start Tue Mar 31 2020 12:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47339 * 60.00387 * 9 7 5 11 11 H 1.48505 * 109.47064 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47330 * 299.99677 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 O 1.42902 * 109.47178 * 179.97438 * 17 16 14 19 19 C 1.35913 * 116.99601 * 180.02562 * 18 17 16 20 20 C 1.38846 * 119.98621 * 359.72093 * 19 18 17 21 21 C 1.38246 * 120.23954 * 179.76599 * 20 19 18 22 22 C 1.38016 * 120.20337 * 0.51451 * 21 20 19 23 23 C 1.39561 * 119.96506 * 359.74340 * 22 21 20 24 24 C 1.47856 * 120.11956 * 179.97438 * 23 22 21 25 25 N 1.34780 * 119.99982 * 0.02562 * 24 23 22 26 26 O 1.21550 * 120.00254 * 180.02562 * 24 23 22 27 27 C 1.38452 * 119.97733 * 180.02562 * 19 18 17 28 28 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 29 29 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 30 30 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 32 32 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 33 33 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 34 34 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 35 35 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 36 36 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 37 37 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 38 38 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 39 39 H 1.08000 * 119.88686 * 0.02562 * 20 19 18 40 40 H 1.07991 * 119.90065 * 180.26005 * 21 20 19 41 41 H 1.07999 * 120.01560 * 179.76537 * 22 21 20 42 42 H 0.96996 * 119.99482 * 0.02562 * 25 24 23 43 43 H 0.97001 * 119.99920 * 180.02562 * 25 24 23 44 44 H 1.07999 * 120.11071 * 359.95564 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5966 0.1455 -0.2343 11 1 6.3979 0.2169 -2.6503 12 1 6.5003 2.2802 -1.3809 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 6 -1.3871 3.8842 2.5250 18 8 -1.7676 4.5174 3.7482 19 6 -3.0112 5.0635 3.7994 20 6 -3.8451 4.9955 2.6914 21 6 -5.1128 5.5449 2.7394 22 6 -5.5539 6.1742 3.8858 23 6 -4.7207 6.2522 5.0027 24 6 -5.1896 6.9260 6.2325 25 7 -6.4237 7.4659 6.2764 26 8 -4.4620 6.9931 7.2039 27 6 -3.4433 5.6929 4.9544 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.8292 -0.0604 -2.9502 34 1 2.2718 2.1233 1.9978 35 1 0.0680 2.6060 3.4684 36 1 0.7223 4.1501 2.8717 37 1 -1.4211 4.6108 1.7132 38 1 -2.0755 3.0668 2.3099 39 1 -3.5039 4.5079 1.7902 40 1 -5.7584 5.4852 1.8758 41 1 -6.5434 6.6057 3.9187 42 1 -7.0044 7.4120 5.5014 43 1 -6.7312 7.9083 7.0831 44 1 -2.7940 5.7502 5.8156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183841136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:41 Heat of formation + Delta-G solvation = -124.337916 kcal Electronic energy + Delta-G solvation = -25715.836570 eV Core-core repulsion = 21824.954669 eV Total energy + Delta-G solvation = -3890.881901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51001 -40.80236 -40.19692 -38.16417 -36.96240 -34.86066 -34.30914 -33.44291 -32.47634 -32.01250 -30.58152 -28.93780 -26.19980 -25.08748 -24.24846 -23.44598 -21.98583 -21.38797 -21.04537 -19.76748 -18.85578 -18.16937 -17.77460 -17.47002 -17.25641 -17.04321 -16.85535 -16.40072 -16.21378 -15.93580 -15.80329 -15.19865 -14.74903 -14.72258 -14.61178 -14.40137 -14.26362 -13.65473 -13.42975 -13.17235 -13.11745 -12.90655 -12.81216 -12.70237 -12.64201 -12.18316 -12.05357 -11.98957 -11.77691 -11.56594 -11.25536 -11.05380 -10.75824 -10.71011 -10.50061 -10.09355 -9.62430 -9.31855 -8.15568 -6.32450 -0.26389 0.36281 1.45535 1.46672 1.54310 1.78506 1.80613 1.83016 2.38738 2.52177 2.80301 2.91396 3.14063 3.65725 3.75236 3.86754 3.95735 4.03154 4.09916 4.15665 4.28780 4.45626 4.51172 4.52780 4.58985 4.74141 4.75221 4.79469 4.89155 5.08405 5.17245 5.25466 5.27866 5.34830 5.45029 5.57442 5.60336 5.63222 5.81143 5.85652 5.93168 6.18438 6.30379 6.39390 6.75608 6.97919 7.25735 7.34322 7.57347 8.89308 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032187 B = 0.001991 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.719683 B =14060.597113 C =14532.093535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.704 5.704 14 C 0.505 3.495 15 O -0.587 6.587 16 C -0.130 4.130 17 C 0.083 3.917 18 O -0.325 6.325 19 C 0.108 3.892 20 C -0.188 4.188 21 C -0.082 4.082 22 C -0.110 4.110 23 C -0.115 4.115 24 C 0.563 3.437 25 N -0.823 5.823 26 O -0.588 6.588 27 C -0.114 4.114 28 H 0.046 0.954 29 H 0.027 0.973 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.138 0.862 40 H 0.165 0.835 41 H 0.171 0.829 42 H 0.419 0.581 43 H 0.415 0.585 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.735 11.475 12.933 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.353 5.353 14 C 0.292 3.708 15 O -0.468 6.468 16 C -0.169 4.169 17 C 0.008 3.992 18 O -0.239 6.239 19 C 0.063 3.937 20 C -0.207 4.207 21 C -0.100 4.100 22 C -0.128 4.128 23 C -0.118 4.118 24 C 0.349 3.651 25 N -0.388 5.388 26 O -0.469 6.469 27 C -0.134 4.134 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.155 0.845 40 H 0.182 0.818 41 H 0.188 0.812 42 H 0.252 0.748 43 H 0.247 0.753 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.537 11.300 12.744 25.919 hybrid contribution 1.074 -0.147 -0.389 1.152 sum -18.463 11.153 12.355 24.858 Atomic orbital electron populations 1.21675 0.96814 0.99154 1.00390 1.21792 0.93914 0.99166 1.01255 1.18370 0.93522 0.89214 0.81454 0.98141 1.21569 0.91596 1.38911 1.06655 0.91083 1.25747 1.03140 0.94463 0.95119 1.70037 1.37025 1.38322 1.09808 0.85458 0.79356 0.78391 0.77484 1.19060 1.21277 1.19740 1.46243 1.15580 1.55786 1.17684 1.20715 0.81951 0.78542 0.89596 1.90670 1.52298 1.61311 1.42550 1.21417 0.96634 1.02946 0.95935 1.22371 0.95762 0.96908 0.84208 1.85973 1.29574 1.70139 1.38199 1.18998 0.84925 0.95069 0.94699 1.21818 0.96430 1.04135 0.98279 1.21325 0.94546 0.94978 0.99162 1.21574 1.00550 0.99442 0.91277 1.19683 0.94835 1.02103 0.95159 1.18336 0.82379 0.77700 0.86668 1.43519 1.15163 1.58997 1.21160 1.90813 1.56827 1.60864 1.38445 1.20463 0.96564 0.99464 0.96920 0.93507 0.95406 0.93735 0.91112 0.94135 0.92633 0.75989 0.86038 0.86279 0.91481 0.91284 0.84459 0.81752 0.81168 0.74787 0.75271 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.70 16 3 C 0.28 13.78 2.24 44.25 0.10 13.88 16 4 H 0.00 0.04 7.58 -2.38 -0.02 0.02 16 5 C -0.55 -28.41 8.73 25.60 0.22 -28.19 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.91 -51.49 11.29 21.45 0.24 -51.25 16 9 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 10 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 N -0.70 -27.31 5.02 -446.08 -2.24 -29.55 16 14 C 0.50 18.13 6.40 87.66 0.56 18.69 16 15 O -0.59 -25.40 13.12 -3.04 -0.04 -25.44 16 16 C -0.13 -3.27 6.07 29.85 0.18 -3.09 16 17 C 0.08 2.11 4.03 71.98 0.29 2.40 16 18 O -0.32 -8.38 10.13 -92.57 -0.94 -9.32 16 19 C 0.11 2.58 6.68 22.47 0.15 2.73 16 20 C -0.19 -3.66 9.03 22.42 0.20 -3.46 16 21 C -0.08 -1.08 10.03 22.22 0.22 -0.85 16 22 C -0.11 -1.23 9.54 22.54 0.21 -1.02 16 23 C -0.11 -2.09 5.87 -20.10 -0.12 -2.21 16 24 C 0.56 10.50 8.05 86.79 0.70 11.20 16 25 N -0.82 -6.26 8.82 -175.59 -1.55 -7.81 16 26 O -0.59 -16.73 17.18 -3.87 -0.07 -16.80 16 27 C -0.11 -2.71 9.53 22.63 0.22 -2.49 16 28 H 0.05 1.91 5.64 -2.39 -0.01 1.90 16 29 H 0.03 1.29 7.85 -2.39 -0.02 1.27 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 3.83 5.95 -2.38 -0.01 3.82 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.41 13.21 8.54 -92.71 -0.79 12.42 16 35 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.07 1.76 7.60 -2.39 -0.02 1.75 16 38 H 0.07 1.79 7.62 -2.39 -0.02 1.77 16 39 H 0.14 2.68 6.28 -2.91 -0.02 2.66 16 40 H 0.16 1.11 8.06 -2.92 -0.02 1.09 16 41 H 0.17 0.31 6.40 -2.91 -0.02 0.29 16 42 H 0.42 0.16 6.86 -92.71 -0.64 -0.48 16 43 H 0.41 2.18 8.93 -92.71 -0.83 1.35 16 44 H 0.13 3.33 7.65 -2.91 -0.02 3.30 16 Total: -1.00 -74.43 365.46 0.41 -74.01 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -1.19 Total: 24.09 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 4.17 Total: -1.55 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -3.55 Total: -88.61 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -1.04 Total: -51.56 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -74.43 0.41 -74.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183841136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.327 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds