Wall clock time and date at job start Tue Mar 31 2020 12:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47057 * 2 1 4 4 H 1.09000 * 109.47538 * 305.00268 * 3 2 1 5 5 C 1.50701 * 109.47051 * 184.99650 * 3 2 1 6 6 H 1.07999 * 119.99936 * 239.99997 * 5 3 2 7 7 C 1.37877 * 119.99701 * 60.00382 * 5 3 2 8 8 N 1.31518 * 119.99920 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99902 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46621 * 90.00087 * 9 7 5 11 11 H 1.48500 * 109.47258 * 210.00184 * 9 7 5 12 12 H 1.48499 * 109.47171 * 330.00397 * 9 7 5 13 13 N 1.46506 * 109.46707 * 65.00242 * 3 2 1 14 14 C 1.34777 * 119.99720 * 274.99670 * 13 3 2 15 15 O 1.21590 * 120.00071 * 0.02562 * 14 13 3 16 16 N 1.34781 * 119.99814 * 180.02562 * 14 13 3 17 17 C 1.40156 * 119.99785 * 175.06384 * 16 14 13 18 18 C 1.38835 * 120.01399 * 324.69777 * 17 16 14 19 19 C 1.38096 * 119.98164 * 179.79090 * 18 17 16 20 20 C 1.38715 * 120.01770 * 0.48905 * 19 18 17 21 21 O 1.35975 * 119.98968 * 179.72578 * 20 19 18 22 22 C 1.42901 * 117.00142 * 186.03549 * 21 20 19 23 23 C 1.54031 * 113.81338 * 253.39820 * 22 21 20 24 24 O 1.44448 * 85.42362 * 223.23486 * 23 22 21 25 25 C 1.44175 * 93.38000 * 24.09179 * 24 23 22 26 26 C 1.38718 * 120.02729 * 359.73970 * 20 19 18 27 27 C 1.38100 * 120.01455 * 0.02831 * 26 20 19 28 28 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47212 * 299.99921 * 1 2 3 30 30 H 1.08994 * 109.46971 * 59.99728 * 1 2 3 31 31 H 1.08994 * 109.47316 * 240.00313 * 2 1 3 32 32 H 1.09005 * 109.46962 * 119.99737 * 2 1 3 33 33 H 0.97000 * 119.99736 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00074 * 95.00483 * 13 3 2 35 35 H 0.96995 * 119.99919 * 355.05737 * 16 14 13 36 36 H 1.07998 * 120.00464 * 0.02791 * 18 17 16 37 37 H 1.08004 * 119.99311 * 180.22942 * 19 18 17 38 38 H 1.08995 * 112.99760 * 25.22368 * 22 21 20 39 39 H 1.08991 * 113.86996 * 337.33950 * 23 22 21 40 40 H 1.08998 * 113.86630 * 109.05037 * 23 22 21 41 41 H 1.09002 * 113.86537 * 221.76817 * 25 24 23 42 42 H 1.08995 * 113.98657 * 90.07291 * 25 24 23 43 43 H 1.07991 * 119.99376 * 180.02562 * 26 20 19 44 44 H 1.07997 * 120.00867 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8813 -1.3817 10 1 6.5547 -0.3502 -0.7601 11 1 6.3830 0.9225 -2.8172 12 1 6.5570 2.0738 -0.6900 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3416 2.6318 0.4321 16 7 0.0787 3.2673 2.5186 17 6 -1.1445 3.9461 2.6048 18 6 -1.6354 4.6351 1.5039 19 6 -2.8427 5.3001 1.5883 20 6 -3.5601 5.2883 2.7755 21 8 -4.7461 5.9480 2.8596 22 6 -5.3663 6.0062 4.1456 23 6 -6.5993 5.0933 4.2834 24 8 -7.2131 6.2176 4.9511 25 6 -6.3520 7.1787 4.3083 26 6 -3.0678 4.6040 3.8772 27 6 -1.8628 3.9346 3.7928 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0611 -2.9498 34 1 2.2719 2.1231 1.9978 35 1 0.6687 3.2313 3.2876 36 1 -1.0750 4.6477 0.5808 37 1 -3.2266 5.8330 0.7309 38 1 -4.6550 5.9121 4.9661 39 1 -7.0663 4.8364 3.3327 40 1 -6.4387 4.2296 4.9286 41 1 -5.9955 7.9655 4.9732 42 1 -6.7415 7.5615 3.3650 43 1 -3.6269 4.5949 4.8011 44 1 -1.4795 3.4022 4.6507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187182025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:00 Heat of formation + Delta-G solvation = -43.242122 kcal Electronic energy + Delta-G solvation = -26340.551027 eV Core-core repulsion = 22453.185704 eV Total energy + Delta-G solvation = -3887.365323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16363 -40.20404 -39.06989 -37.22403 -35.22047 -33.91943 -32.38072 -31.14282 -30.86947 -29.55393 -28.18364 -27.06279 -26.72253 -23.55352 -23.15718 -22.28837 -21.23186 -20.29028 -19.52442 -18.81336 -18.18995 -17.41021 -16.95639 -16.61379 -16.11500 -15.89251 -15.34970 -14.98707 -14.82301 -14.53373 -14.22790 -14.08990 -13.54539 -13.23356 -13.19527 -12.91463 -12.75988 -12.60442 -12.45069 -12.07442 -11.81530 -11.58677 -11.27099 -11.25913 -11.00432 -10.86670 -10.79969 -10.33681 -10.20386 -10.19033 -9.77267 -9.55669 -9.42217 -9.06428 -8.94329 -8.53285 -7.94104 -7.53483 -6.14895 -4.24340 1.34006 1.40348 2.92438 3.13850 3.18824 3.22364 3.30004 3.32755 3.57682 3.77519 4.03576 4.29861 4.30729 4.64346 4.75541 4.83101 4.90119 4.92550 5.01865 5.14677 5.16996 5.32685 5.41446 5.50223 5.55725 5.65680 5.96504 5.99173 6.24047 6.39843 6.41144 6.47386 6.59761 6.67034 6.99672 7.01098 7.11928 7.31922 7.34088 7.36932 7.44245 7.62291 7.84671 7.96573 8.16635 8.71254 8.82810 9.23654 9.44291 10.90404 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.036837 B = 0.002197 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.921733 B =12742.657542 C =12903.337691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.719 5.719 14 C 0.692 3.308 15 O -0.576 6.576 16 N -0.698 5.698 17 C 0.153 3.847 18 C -0.079 4.079 19 C -0.126 4.126 20 C 0.094 3.906 21 O -0.304 6.304 22 C 0.013 3.987 23 C 0.020 3.980 24 O -0.374 6.374 25 C 0.044 3.956 26 C -0.189 4.189 27 C -0.117 4.117 28 H 0.021 0.979 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.385 0.615 35 H 0.401 0.599 36 H 0.145 0.855 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 10.078 14.362 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.370 5.370 14 C 0.392 3.608 15 O -0.454 6.454 16 N -0.347 5.347 17 C 0.057 3.943 18 C -0.100 4.100 19 C -0.145 4.145 20 C 0.049 3.951 21 O -0.218 6.218 22 C -0.044 4.044 23 C -0.056 4.056 24 O -0.293 6.293 25 C -0.032 4.032 26 C -0.208 4.208 27 C -0.138 4.138 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.217 0.783 35 H 0.235 0.765 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.144 0.856 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.504 10.002 13.255 22.048 hybrid contribution 1.782 -0.312 0.788 1.973 sum -12.722 9.690 14.042 21.282 Atomic orbital electron populations 1.21813 0.98242 0.97898 1.01304 1.21963 0.92706 0.99884 1.02218 1.18725 0.93995 0.88893 0.79926 0.93193 1.21214 0.90639 1.39116 1.06322 0.92107 1.24880 0.98619 0.94813 0.95369 1.69897 1.35125 1.37482 1.09335 0.86446 0.84820 0.78409 0.77401 1.20566 1.21059 1.19898 1.45840 1.13031 1.58830 1.19278 1.16120 0.83588 0.78704 0.82339 1.90911 1.51695 1.64506 1.38245 1.42880 1.19791 1.56817 1.15190 1.17456 0.87285 0.94803 0.94746 1.21123 0.95677 0.93891 0.99292 1.20332 0.94833 1.03042 0.96324 1.18901 0.86069 0.95217 0.94880 1.86193 1.33204 1.71544 1.30879 1.26161 0.94639 0.96885 0.86741 1.24697 0.90665 0.91846 0.98426 1.89780 1.59085 1.17819 1.62618 1.24283 0.87242 0.93121 0.98579 1.20889 0.98405 1.03185 0.98297 1.20633 0.94292 1.01199 0.97686 0.96019 0.94310 0.93119 0.88257 0.95130 0.92520 0.78259 0.76455 0.83692 0.85053 0.87121 0.88771 0.88347 0.88045 0.88781 0.85585 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.29 7.01 2.24 -69.08 -0.15 6.85 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.65 16 9 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 13 N -0.72 -14.27 5.03 -59.80 -0.30 -14.58 16 14 C 0.69 13.29 6.86 -86.91 -0.60 12.69 16 15 O -0.58 -13.02 11.28 5.29 0.06 -12.96 16 16 N -0.70 -10.21 5.35 -14.18 -0.08 -10.29 16 17 C 0.15 2.19 6.25 -83.61 -0.52 1.67 16 18 C -0.08 -1.21 8.65 -39.41 -0.34 -1.55 16 19 C -0.13 -1.68 9.98 -39.46 -0.39 -2.07 16 20 C 0.09 1.13 6.68 -39.23 -0.26 0.87 16 21 O -0.30 -3.28 10.17 -19.66 -0.20 -3.48 16 22 C 0.01 0.10 3.91 -25.65 -0.10 0.00 16 23 C 0.02 0.16 9.07 37.64 0.34 0.50 16 24 O -0.37 -3.47 12.46 -35.23 -0.44 -3.91 16 25 C 0.04 0.31 9.05 37.64 0.34 0.65 16 26 C -0.19 -2.02 9.01 -39.45 -0.36 -2.38 16 27 C -0.12 -1.35 9.96 -39.41 -0.39 -1.75 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 30 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.39 6.55 8.56 -40.82 -0.35 6.20 16 35 H 0.40 4.48 8.84 -40.82 -0.36 4.12 16 36 H 0.15 2.51 6.55 -52.49 -0.34 2.17 16 37 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.11 0.75 5.97 -51.93 -0.31 0.44 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.13 1.02 5.91 -52.49 -0.31 0.71 16 44 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -30.96 359.93 -8.59 -39.55 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.00 Total: 11.49 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.66 Total: -2.83 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.25 Total: -48.51 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.58 Total: -20.35 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.96 -8.59 -39.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187182025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.695 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds