Wall clock time and date at job start Tue Mar 31 2020 12:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47057 * 2 1 4 4 H 1.09000 * 109.47538 * 305.00268 * 3 2 1 5 5 C 1.50701 * 109.47051 * 184.99650 * 3 2 1 6 6 H 1.07999 * 119.99936 * 239.99997 * 5 3 2 7 7 C 1.37877 * 119.99701 * 60.00382 * 5 3 2 8 8 N 1.31518 * 119.99920 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99902 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46621 * 90.00087 * 9 7 5 11 11 H 1.48500 * 109.47258 * 210.00184 * 9 7 5 12 12 H 1.48499 * 109.47171 * 330.00397 * 9 7 5 13 13 N 1.46506 * 109.46707 * 65.00242 * 3 2 1 14 14 C 1.34777 * 119.99720 * 274.99670 * 13 3 2 15 15 O 1.21590 * 120.00071 * 0.02562 * 14 13 3 16 16 N 1.34781 * 119.99814 * 180.02562 * 14 13 3 17 17 C 1.40156 * 119.99785 * 175.06384 * 16 14 13 18 18 C 1.38835 * 120.01399 * 324.69777 * 17 16 14 19 19 C 1.38096 * 119.98164 * 179.79090 * 18 17 16 20 20 C 1.38715 * 120.01770 * 0.48905 * 19 18 17 21 21 O 1.35975 * 119.98968 * 179.72578 * 20 19 18 22 22 C 1.42901 * 117.00142 * 186.03549 * 21 20 19 23 23 C 1.54031 * 113.81338 * 253.39820 * 22 21 20 24 24 O 1.44448 * 85.42362 * 223.23486 * 23 22 21 25 25 C 1.44175 * 93.38000 * 24.09179 * 24 23 22 26 26 C 1.38718 * 120.02729 * 359.73970 * 20 19 18 27 27 C 1.38100 * 120.01455 * 0.02831 * 26 20 19 28 28 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47212 * 299.99921 * 1 2 3 30 30 H 1.08994 * 109.46971 * 59.99728 * 1 2 3 31 31 H 1.08994 * 109.47316 * 240.00313 * 2 1 3 32 32 H 1.09005 * 109.46962 * 119.99737 * 2 1 3 33 33 H 0.97000 * 119.99736 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00074 * 95.00483 * 13 3 2 35 35 H 0.96995 * 119.99919 * 355.05737 * 16 14 13 36 36 H 1.07998 * 120.00464 * 0.02791 * 18 17 16 37 37 H 1.08004 * 119.99311 * 180.22942 * 19 18 17 38 38 H 1.08995 * 112.99760 * 25.22368 * 22 21 20 39 39 H 1.08991 * 113.86996 * 337.33950 * 23 22 21 40 40 H 1.08998 * 113.86630 * 109.05037 * 23 22 21 41 41 H 1.09002 * 113.86537 * 221.76817 * 25 24 23 42 42 H 1.08995 * 113.98657 * 90.07291 * 25 24 23 43 43 H 1.07991 * 119.99376 * 180.02562 * 26 20 19 44 44 H 1.07997 * 120.00867 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8813 -1.3817 10 1 6.5547 -0.3502 -0.7601 11 1 6.3830 0.9225 -2.8172 12 1 6.5570 2.0738 -0.6900 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3416 2.6318 0.4321 16 7 0.0787 3.2673 2.5186 17 6 -1.1445 3.9461 2.6048 18 6 -1.6354 4.6351 1.5039 19 6 -2.8427 5.3001 1.5883 20 6 -3.5601 5.2883 2.7755 21 8 -4.7461 5.9480 2.8596 22 6 -5.3663 6.0062 4.1456 23 6 -6.5993 5.0933 4.2834 24 8 -7.2131 6.2176 4.9511 25 6 -6.3520 7.1787 4.3083 26 6 -3.0678 4.6040 3.8772 27 6 -1.8628 3.9346 3.7928 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0611 -2.9498 34 1 2.2719 2.1231 1.9978 35 1 0.6687 3.2313 3.2876 36 1 -1.0750 4.6477 0.5808 37 1 -3.2266 5.8330 0.7309 38 1 -4.6550 5.9121 4.9661 39 1 -7.0663 4.8364 3.3327 40 1 -6.4387 4.2296 4.9286 41 1 -5.9955 7.9655 4.9732 42 1 -6.7415 7.5615 3.3650 43 1 -3.6269 4.5949 4.8011 44 1 -1.4795 3.4022 4.6507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187182025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:59 Heat of formation + Delta-G solvation = -64.955875 kcal Electronic energy + Delta-G solvation = -26341.492606 eV Core-core repulsion = 22453.185704 eV Total energy + Delta-G solvation = -3888.306902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92351 -41.42858 -40.12814 -38.31554 -36.89508 -35.27351 -34.23713 -32.66566 -32.07711 -30.40401 -29.37021 -28.42377 -27.60008 -25.10822 -24.41047 -23.48240 -22.37424 -21.49314 -21.17436 -19.75069 -19.58696 -18.65510 -17.91614 -17.52309 -17.29765 -17.02120 -16.74322 -16.49796 -15.97008 -15.70737 -15.39990 -15.25395 -14.95288 -14.55595 -14.43665 -14.17348 -13.78492 -13.65090 -13.56661 -13.48666 -13.16907 -13.11426 -12.87762 -12.65851 -12.47365 -12.19404 -12.12431 -12.04601 -11.66800 -11.57027 -11.12262 -11.00201 -10.82328 -10.69347 -10.52506 -9.96867 -9.65003 -8.63020 -8.14734 -6.31676 0.36490 0.37608 1.45961 1.46624 1.56705 1.84484 2.16881 2.25645 2.43534 2.57433 2.84139 3.14835 3.17328 3.51603 3.71372 3.87430 3.99894 4.11217 4.27471 4.36445 4.40546 4.51351 4.53549 4.59200 4.63611 4.66294 4.77849 4.86992 4.98864 5.01517 5.03612 5.08733 5.24528 5.29615 5.38888 5.46154 5.52165 5.58255 5.63982 5.78820 5.88641 5.93450 6.18881 6.33126 6.43513 6.76725 7.30589 7.37150 7.77241 8.90616 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.036837 B = 0.002197 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.921733 B =12742.657542 C =12903.337691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.615 6.615 16 N -0.678 5.678 17 C 0.125 3.875 18 C -0.101 4.101 19 C -0.141 4.141 20 C 0.100 3.900 21 O -0.313 6.313 22 C 0.007 3.993 23 C 0.018 3.982 24 O -0.394 6.394 25 C 0.044 3.956 26 C -0.180 4.180 27 C -0.101 4.101 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.024 0.976 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.420 0.580 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.095 0.905 43 H 0.162 0.838 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.670 10.368 17.656 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.495 6.495 16 N -0.328 5.328 17 C 0.030 3.970 18 C -0.122 4.122 19 C -0.160 4.160 20 C 0.054 3.946 21 O -0.228 6.228 22 C -0.049 4.049 23 C -0.058 4.058 24 O -0.314 6.314 25 C -0.032 4.032 26 C -0.198 4.198 27 C -0.122 4.122 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.258 0.742 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.108 0.892 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.113 0.887 43 H 0.180 0.820 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.580 10.327 16.628 24.408 hybrid contribution 1.629 -0.297 -0.192 1.667 sum -12.952 10.030 16.436 23.206 Atomic orbital electron populations 1.21632 0.97081 0.98811 1.00155 1.21806 0.93613 0.99327 1.01279 1.18258 0.93407 0.88785 0.80261 0.98335 1.21560 0.91334 1.38864 1.06682 0.90968 1.25758 1.03229 0.94462 0.95056 1.70053 1.37009 1.38332 1.09869 0.85371 0.79199 0.78825 0.77075 1.19694 1.21414 1.18953 1.45430 1.13884 1.59076 1.18440 1.16200 0.82887 0.78585 0.83097 1.90896 1.52710 1.65768 1.40088 1.42499 1.20406 1.55741 1.14200 1.17665 0.87690 0.95816 0.95780 1.20928 0.96624 0.95871 0.98727 1.20345 0.94677 1.03428 0.97523 1.18951 0.86214 0.94793 0.94607 1.86200 1.32561 1.71165 1.32841 1.26444 0.94911 0.97632 0.85950 1.24804 0.90231 0.92166 0.98638 1.89769 1.59801 1.18748 1.63035 1.24446 0.86440 0.93185 0.99115 1.21265 0.97999 1.01542 0.99039 1.20941 0.93820 1.00249 0.97185 0.93893 0.93981 0.95689 0.90985 0.94023 0.92623 0.76364 0.74234 0.87095 0.84929 0.85246 0.89214 0.86596 0.85869 0.88706 0.82042 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.82 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.75 16 3 C 0.30 14.96 2.24 44.25 0.10 15.06 16 4 H 0.00 -0.08 7.58 -2.39 -0.02 -0.09 16 5 C -0.55 -28.31 8.73 25.60 0.22 -28.08 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.80 5.29 84.65 0.45 1.25 16 8 N -0.91 -51.83 11.29 21.45 0.24 -51.59 16 9 Si 0.97 41.53 29.54 68.60 2.03 43.55 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 13 N -0.72 -28.63 5.03 -461.38 -2.32 -30.95 16 14 C 0.69 26.99 6.86 179.05 1.23 28.22 16 15 O -0.61 -29.12 11.28 -4.00 -0.05 -29.16 16 16 N -0.68 -19.26 5.35 -317.05 -1.70 -20.96 16 17 C 0.13 3.48 6.25 38.10 0.24 3.72 16 18 C -0.10 -3.19 8.65 22.38 0.19 -2.99 16 19 C -0.14 -3.79 9.98 22.35 0.22 -3.57 16 20 C 0.10 2.21 6.68 22.50 0.15 2.36 16 21 O -0.31 -6.15 10.17 -93.27 -0.95 -7.10 16 22 C 0.01 0.09 3.91 31.29 0.12 0.21 16 23 C 0.02 0.24 9.07 72.29 0.66 0.89 16 24 O -0.39 -6.42 12.46 -148.98 -1.86 -8.28 16 25 C 0.04 0.52 9.05 72.30 0.65 1.18 16 26 C -0.18 -3.21 9.01 22.35 0.20 -3.01 16 27 C -0.10 -2.02 9.96 22.38 0.22 -1.80 16 28 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 30 H 0.02 1.22 7.84 -2.39 -0.02 1.20 16 31 H 0.07 3.95 5.95 -2.39 -0.01 3.93 16 32 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.26 14.25 8.31 -92.71 -0.77 13.47 16 34 H 0.40 13.27 8.56 -92.71 -0.79 12.47 16 35 H 0.42 8.49 8.84 -92.71 -0.82 7.68 16 36 H 0.11 4.22 6.55 -2.91 -0.02 4.20 16 37 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 38 H 0.13 1.19 5.97 -2.39 -0.01 1.18 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.16 1.74 5.91 -2.92 -0.02 1.73 16 44 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -69.95 359.93 0.28 -69.67 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.56 Total: 31.95 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.44 Total: 2.86 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -3.77 Total: -103.50 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -2.85 Total: -44.54 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -69.95 0.28 -69.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187182025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.712 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds