Wall clock time and date at job start Tue Mar 31 2020 12:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46463 * 2 1 4 4 H 1.08998 * 109.47436 * 55.00198 * 3 2 1 5 5 C 1.50705 * 109.46745 * 175.00054 * 3 2 1 6 6 H 1.07999 * 120.00252 * 119.99920 * 5 3 2 7 7 C 1.37882 * 119.99866 * 300.00189 * 5 3 2 8 8 N 1.31510 * 120.00135 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99884 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46871 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47250 * 119.99313 * 9 7 5 12 12 H 1.48498 * 109.46709 * 239.99684 * 9 7 5 13 13 O 1.45197 * 109.47344 * 294.99655 * 3 2 1 14 14 C 1.34230 * 116.99857 * 90.00222 * 13 3 2 15 15 O 1.20826 * 119.99720 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00143 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.46940 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47000 * 179.97438 * 17 16 14 19 19 N 1.46499 * 109.47198 * 179.97438 * 18 17 16 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21553 * 120.00289 * 359.72074 * 20 19 18 22 22 C 1.47841 * 119.99890 * 179.72373 * 20 19 18 23 23 C 1.40022 * 120.56277 * 179.72058 * 22 20 19 24 24 C 1.38354 * 118.28856 * 179.73560 * 23 22 20 25 25 C 1.38347 * 119.30607 * 0.55971 * 24 23 22 26 26 N 1.31934 * 121.07777 * 359.70164 * 25 24 23 27 27 C 1.31691 * 121.87654 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47178 * 299.99686 * 1 2 3 29 29 H 1.08999 * 109.47156 * 60.00247 * 1 2 3 30 30 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47085 * 240.00028 * 2 1 3 32 32 H 1.08999 * 109.47156 * 119.99753 * 2 1 3 33 33 H 0.97001 * 120.00257 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.46839 * 59.99941 * 16 14 13 35 35 H 1.09007 * 109.46560 * 300.00076 * 16 14 13 36 36 H 1.08995 * 109.47672 * 60.00122 * 17 16 14 37 37 H 1.09006 * 109.46819 * 299.99551 * 17 16 14 38 38 H 1.09009 * 109.46730 * 59.99606 * 18 17 16 39 39 H 1.08998 * 109.46846 * 300.00150 * 18 17 16 40 40 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 41 41 H 1.08004 * 120.84891 * 359.97438 * 23 22 20 42 42 H 1.07996 * 120.34662 * 180.25955 * 24 23 22 43 43 H 1.07998 * 119.46561 * 179.71812 * 25 24 23 44 44 H 1.08003 * 119.71198 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4445 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8815 1.3818 10 1 6.5986 1.5466 0.1942 11 1 6.3989 1.6171 2.6102 12 1 6.4970 -0.5172 1.4630 13 8 1.6558 2.0918 -1.2407 14 6 0.4726 2.7254 -1.2560 15 8 -0.2194 2.7369 -0.2656 16 6 0.0067 3.4216 -2.5088 17 6 -1.3614 4.0593 -2.2591 18 6 -1.8341 4.7667 -3.5308 19 7 -3.1444 5.3768 -3.2920 20 6 -3.7630 6.0531 -4.2801 21 8 -3.2314 6.1612 -5.3679 22 6 -5.0880 6.6636 -4.0410 23 6 -5.7386 7.3738 -5.0574 24 6 -6.9796 7.9210 -4.7840 25 6 -7.5276 7.7607 -3.5238 26 7 -6.8889 7.0909 -2.5836 27 6 -5.7090 6.5464 -2.7971 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0609 2.9499 34 1 -0.0722 2.6970 -3.3191 35 1 0.7237 4.1958 -2.7821 36 1 -1.2822 4.7840 -1.4488 37 1 -2.0785 3.2853 -1.9855 38 1 -1.9133 4.0422 -4.3414 39 1 -1.1169 5.5406 -3.8040 40 1 -3.5687 5.2902 -2.4240 41 1 -5.2850 7.4880 -6.0309 42 1 -7.5127 8.4716 -5.5448 43 1 -8.4941 8.1907 -3.3062 44 1 -5.2175 6.0051 -2.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188007158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:18 Heat of formation + Delta-G solvation = -126.622924 kcal Electronic energy + Delta-G solvation = -25502.835331 eV Core-core repulsion = 21611.854345 eV Total energy + Delta-G solvation = -3890.980986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63909 -41.32564 -40.05768 -37.86860 -36.69227 -35.47846 -34.13053 -33.53714 -33.30062 -32.28560 -29.49814 -28.31555 -25.65123 -25.08019 -24.51903 -23.34726 -22.23937 -21.77554 -21.00863 -19.17531 -18.86373 -18.39767 -17.88215 -17.52418 -17.45884 -17.04295 -16.65147 -16.47849 -16.15750 -15.66716 -15.61897 -14.87690 -14.78325 -14.66048 -14.46963 -14.13106 -14.01722 -13.45193 -13.37165 -13.29636 -13.22865 -13.13199 -13.01236 -12.79504 -12.58623 -12.43707 -12.12912 -11.92033 -11.74179 -11.45485 -11.38120 -11.17878 -11.00019 -10.79689 -10.51796 -10.50126 -10.36980 -10.08707 -8.27411 -6.43720 -0.41012 0.18766 1.41532 1.41600 1.46270 1.55652 1.75821 1.87335 2.22485 2.46694 2.82503 3.02269 3.28958 3.66944 3.76352 3.79027 3.92568 3.96660 3.98674 4.02042 4.28872 4.38924 4.41784 4.42955 4.51836 4.56037 4.64785 4.66903 4.73213 4.86612 4.98981 5.07924 5.08866 5.10793 5.17679 5.23442 5.31673 5.42757 5.53508 5.56602 5.69358 6.01661 6.19205 6.37383 6.62402 6.82551 7.04431 7.06074 7.29112 8.79331 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030001 B = 0.001877 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.078414 B =14911.124082 C =15271.246718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.131 4.131 3 C 0.224 3.776 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.065 0.935 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.979 3.021 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.272 1.272 13 O -0.368 6.368 14 C 0.442 3.558 15 O -0.545 6.545 16 C -0.104 4.104 17 C -0.109 4.109 18 C 0.126 3.874 19 N -0.714 5.714 20 C 0.563 3.437 21 O -0.574 6.574 22 C -0.203 4.203 23 C -0.029 4.029 24 C -0.170 4.170 25 C 0.118 3.882 26 N -0.513 5.513 27 C 0.132 3.868 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.270 0.730 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.413 0.587 41 H 0.147 0.853 42 H 0.176 0.824 43 H 0.191 0.809 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.748 13.013 -13.515 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.198 1.198 13 O -0.284 6.284 14 C 0.287 3.713 15 O -0.436 6.436 16 C -0.141 4.141 17 C -0.147 4.147 18 C 0.003 3.997 19 N -0.365 5.365 20 C 0.350 3.650 21 O -0.454 6.454 22 C -0.208 4.208 23 C -0.056 4.056 24 C -0.189 4.189 25 C -0.038 4.038 26 N -0.221 5.221 27 C -0.026 4.026 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.251 0.749 41 H 0.165 0.835 42 H 0.193 0.807 43 H 0.208 0.792 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.892 12.867 -12.957 27.002 hybrid contribution 1.193 -0.230 0.246 1.240 sum -18.699 12.637 -12.711 25.902 Atomic orbital electron populations 1.21704 0.96070 1.00543 1.00261 1.21864 0.94667 0.98152 1.02197 1.20326 0.94366 0.89314 0.78876 0.97503 1.21389 0.90795 1.39727 1.06757 0.91703 1.25791 1.04113 0.93988 0.94461 1.70015 1.37287 1.38048 1.09874 0.85190 0.77937 0.78276 0.78341 1.18826 1.20210 1.19762 1.86464 1.36517 1.63156 1.42313 1.24456 0.79324 0.76180 0.91321 1.90594 1.55841 1.59465 1.37739 1.21332 0.98482 1.01593 0.92739 1.21460 0.95237 1.00572 0.97391 1.21324 0.83587 0.97479 0.97355 1.45842 1.20968 1.54208 1.15524 1.18290 0.84943 0.77947 0.83796 1.90769 1.67519 1.61525 1.25628 1.20963 0.96629 1.05473 0.97761 1.21971 0.93980 0.90677 0.98939 1.22523 0.95583 1.01257 0.99534 1.23638 0.99913 0.91531 0.88682 1.67787 1.08894 1.09923 1.35545 1.23252 0.90749 0.93981 0.94656 0.94564 0.94004 0.92206 0.93682 0.89799 0.92092 0.85528 0.85828 0.90607 0.90342 0.90522 0.90664 0.74923 0.83490 0.80675 0.79172 0.80847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.56 71.98 0.62 -4.85 16 2 C -0.13 -6.49 5.49 30.60 0.17 -6.33 16 3 C 0.22 12.03 2.25 29.85 0.07 12.10 16 4 H 0.01 0.43 7.16 -2.39 -0.02 0.42 16 5 C -0.55 -30.95 8.90 25.60 0.23 -30.73 16 6 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -52.06 11.29 21.45 0.24 -51.82 16 9 Si 0.98 42.76 29.54 68.60 2.03 44.78 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 O -0.37 -16.95 9.81 -51.42 -0.50 -17.45 16 14 C 0.44 16.77 6.42 71.24 0.46 17.23 16 15 O -0.55 -23.54 13.12 21.96 0.29 -23.25 16 16 C -0.10 -2.43 5.81 29.85 0.17 -2.26 16 17 C -0.11 -2.11 4.62 30.59 0.14 -1.97 16 18 C 0.13 2.15 5.67 86.38 0.49 2.64 16 19 N -0.71 -11.68 5.51 -465.96 -2.57 -14.24 16 20 C 0.56 11.52 7.78 86.79 0.68 12.19 16 21 O -0.57 -15.79 16.42 -3.88 -0.06 -15.85 16 22 C -0.20 -3.39 5.89 -19.99 -0.12 -3.51 16 23 C -0.03 -0.41 9.72 22.73 0.22 -0.19 16 24 C -0.17 -1.51 10.10 22.32 0.23 -1.28 16 25 C 0.12 1.22 11.17 84.70 0.95 2.17 16 26 N -0.51 -8.05 10.35 -194.75 -2.01 -10.07 16 27 C 0.13 1.95 10.71 85.02 0.91 2.86 16 28 H 0.04 1.63 7.80 -2.39 -0.02 1.62 16 29 H 0.04 1.66 6.06 -2.39 -0.01 1.65 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 4.59 5.95 -2.39 -0.01 4.57 16 33 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.12 2.45 8.14 -2.38 -0.02 2.44 16 36 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 37 H 0.08 1.58 8.10 -2.38 -0.02 1.56 16 38 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.41 4.87 6.54 -92.71 -0.61 4.26 16 41 H 0.15 2.03 7.74 -2.91 -0.02 2.01 16 42 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 43 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 44 H 0.17 1.78 6.42 -2.91 -0.02 1.76 16 Total: -1.00 -74.99 370.69 3.47 -71.52 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.41 Total: 16.98 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.65 Total: -0.59 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -4.34 Total: -76.13 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -0.28 Total: -56.56 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.99 3.47 -71.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188007158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.104 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds