Wall clock time and date at job start Tue Mar 31 2020 12:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 H 1.09007 * 109.46903 * 305.58385 * 3 2 1 5 5 C 1.50702 * 109.47133 * 185.59075 * 3 2 1 6 6 H 1.08000 * 119.99593 * 274.99404 * 5 3 2 7 7 C 1.37881 * 120.00188 * 94.98729 * 5 3 2 8 8 N 1.31513 * 119.99687 * 184.83822 * 7 5 3 9 9 Si 1.86794 * 120.00115 * 4.84413 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.86299 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.86520 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86718 * 9 7 5 13 13 O 1.45191 * 109.47422 * 65.58765 * 3 2 1 14 14 C 1.34235 * 117.00168 * 269.99917 * 13 3 2 15 15 O 1.20827 * 119.99857 * 0.02562 * 14 13 3 16 16 C 1.50694 * 119.99977 * 179.97438 * 14 13 3 17 17 C 1.53008 * 109.47083 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47133 * 180.02562 * 17 16 14 19 19 N 1.46505 * 109.46826 * 180.02562 * 18 17 16 20 20 C 1.34779 * 120.00031 * 179.97438 * 19 18 17 21 21 O 1.21557 * 119.99465 * 0.02562 * 20 19 18 22 22 C 1.47837 * 119.99891 * 179.97438 * 20 19 18 23 23 C 1.40025 * 120.55407 * 179.72054 * 22 20 19 24 24 C 1.38358 * 118.28694 * 179.73617 * 23 22 20 25 25 C 1.38362 * 119.29990 * 0.56675 * 24 23 22 26 26 N 1.31928 * 121.07767 * 359.69437 * 25 24 23 27 27 C 1.31695 * 121.88014 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47131 * 299.99945 * 1 2 3 29 29 H 1.09007 * 109.46616 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47225 * 60.00388 * 1 2 3 31 31 H 1.09004 * 109.47353 * 119.99183 * 2 1 3 32 32 H 1.09001 * 109.47596 * 239.99800 * 2 1 3 33 33 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47794 * 299.99786 * 16 14 13 35 35 H 1.09001 * 109.47335 * 60.00575 * 16 14 13 36 36 H 1.09010 * 109.46807 * 300.00286 * 17 16 14 37 37 H 1.08993 * 109.46850 * 59.99739 * 17 16 14 38 38 H 1.08993 * 109.47118 * 299.99516 * 18 17 16 39 39 H 1.08997 * 109.46981 * 60.00328 * 18 17 16 40 40 H 0.96997 * 120.00163 * 359.97438 * 19 18 17 41 41 H 1.07993 * 120.85911 * 0.02562 * 23 22 20 42 42 H 1.07993 * 120.35371 * 180.26467 * 24 23 22 43 43 H 1.07995 * 119.45628 * 179.72111 * 25 24 23 44 44 H 1.07998 * 119.71201 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5972 1.9844 -0.8358 5 6 3.5406 1.4449 -0.1384 6 1 4.1637 1.3341 0.7367 7 6 4.1180 1.5883 -1.3823 8 7 5.4230 1.4952 -1.5160 9 14 3.0467 1.9150 -2.8772 10 1 2.7807 3.3720 -2.9867 11 1 3.7470 1.4464 -4.1000 12 1 1.7607 1.1866 -2.7335 13 8 1.6678 2.0875 1.2465 14 6 0.4848 2.7212 1.2754 15 8 -0.2167 2.7360 0.2917 16 6 0.0313 3.4130 2.5349 17 6 -1.3399 4.0506 2.3011 18 6 -1.8001 4.7536 3.5797 19 7 -3.1132 5.3636 3.3559 20 6 -3.7200 6.0408 4.3508 21 8 -3.1775 6.1458 5.4335 22 6 -5.0448 6.6568 4.1248 23 6 -5.6884 7.3579 5.1519 24 6 -6.9245 7.9203 4.8873 25 6 -7.4852 7.7633 3.6322 26 7 -6.8578 7.0925 2.6851 27 6 -5.6777 6.5439 2.8866 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 5.8292 1.5957 -2.3911 34 1 -0.0399 2.6857 3.3436 35 1 0.7508 4.1864 2.8039 36 1 -1.2691 4.7780 1.4922 37 1 -2.0591 3.2771 2.0322 38 1 -1.8707 4.0267 4.3887 39 1 -1.0807 5.5273 3.8480 40 1 -3.5459 5.2801 2.4918 41 1 -5.2296 7.4611 6.1241 42 1 -7.4485 8.4718 5.6539 43 1 -8.4520 8.1974 3.4243 44 1 -5.1953 6.0026 2.0861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188007183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:24 Heat of formation + Delta-G solvation = -104.287417 kcal Electronic energy + Delta-G solvation = -25610.366063 eV Core-core repulsion = 21720.353617 eV Total energy + Delta-G solvation = -3890.012446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -41.02569 -39.87503 -39.34852 -36.49334 -35.62903 -33.48921 -33.19042 -32.97828 -32.03667 -31.65559 -28.17347 -27.30304 -24.86039 -24.02100 -23.09848 -22.35561 -21.26851 -20.56407 -19.52760 -18.52451 -17.57867 -17.29252 -16.90522 -16.57068 -16.36099 -15.95456 -15.66951 -15.47057 -15.09529 -14.74476 -14.26909 -14.01334 -13.87786 -13.60192 -13.39635 -12.92070 -12.77007 -12.72723 -12.43938 -12.15756 -12.08194 -11.80838 -11.53047 -11.35313 -11.06588 -11.01607 -10.80877 -10.65716 -10.45199 -10.23794 -9.97370 -9.93115 -9.79152 -9.75163 -9.42145 -9.37439 -9.09237 -8.73322 -6.30588 -4.34606 0.13260 0.68262 2.44403 2.65640 2.86515 3.17833 3.26381 3.31516 3.36586 3.54469 3.76128 4.21594 4.23149 4.28364 4.37639 4.47383 4.73221 4.80567 4.85332 4.86834 5.02574 5.06380 5.35220 5.37916 5.48394 5.50494 5.59211 5.66560 5.86289 5.91167 5.92662 5.96616 6.00769 6.03550 6.09424 6.39698 6.58587 6.75342 6.80068 7.04643 7.13196 7.31850 7.36493 7.52004 7.76106 8.21437 8.61330 8.80553 9.28559 10.80666 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.002049 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.633030 B =13665.196855 C =13984.444776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.188 3.812 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.085 0.915 7 C 0.082 3.918 8 N -0.881 5.881 9 Si 0.869 3.131 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.259 1.259 13 O -0.347 6.347 14 C 0.450 3.550 15 O -0.525 6.525 16 C -0.115 4.115 17 C -0.121 4.121 18 C 0.119 3.881 19 N -0.722 5.722 20 C 0.563 3.437 21 O -0.533 6.533 22 C -0.187 4.187 23 C -0.017 4.017 24 C -0.180 4.180 25 C 0.121 3.879 26 N -0.487 5.487 27 C 0.135 3.865 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.270 0.730 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.402 0.598 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.162 0.838 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.662 10.471 11.257 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.135 3.865 4 H 0.065 0.935 5 C -0.557 4.557 6 H 0.103 0.897 7 C -0.123 4.123 8 N -0.517 5.517 9 Si 0.695 3.305 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.184 1.184 13 O -0.263 6.263 14 C 0.294 3.706 15 O -0.416 6.416 16 C -0.153 4.153 17 C -0.159 4.159 18 C -0.005 4.005 19 N -0.374 5.374 20 C 0.349 3.651 21 O -0.411 6.411 22 C -0.192 4.192 23 C -0.043 4.043 24 C -0.199 4.199 25 C -0.036 4.036 26 N -0.195 5.195 27 C -0.023 4.023 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.238 0.762 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.179 0.821 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -23.629 10.417 10.764 27.977 hybrid contribution -0.238 0.202 -0.589 0.666 sum -23.867 10.619 10.176 28.034 Atomic orbital electron populations 1.21920 0.97504 0.99746 1.01491 1.22097 0.93578 0.98948 1.02344 1.21029 0.96070 0.88826 0.80600 0.93451 1.20804 0.87926 1.51285 0.95689 0.89699 1.24921 0.94986 0.93741 0.98640 1.69856 1.09507 1.47686 1.24676 0.86957 0.81238 0.79812 0.82450 1.19637 1.20752 1.18387 1.86655 1.34126 1.62235 1.43287 1.23345 0.80796 0.76877 0.89625 1.90593 1.55174 1.59003 1.36818 1.21208 0.97355 1.01217 0.95529 1.21592 0.96439 1.00866 0.96998 1.21449 0.83284 0.97574 0.98147 1.45911 1.21176 1.55002 1.15309 1.18020 0.84570 0.78336 0.84215 1.90801 1.65812 1.59882 1.24584 1.21027 0.97077 1.04322 0.96816 1.21779 0.93106 0.90415 0.99022 1.22214 0.96547 1.02051 0.99123 1.23068 0.99089 0.92597 0.88813 1.67734 1.08825 1.08874 1.34096 1.23036 0.90612 0.93973 0.94717 0.93867 0.94123 0.92798 0.91956 0.91095 0.91970 0.87893 0.87687 0.90127 0.90205 0.90757 0.90687 0.76247 0.83386 0.83834 0.82068 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.57 37.16 0.32 -2.48 16 2 C -0.13 -2.83 5.63 -26.73 -0.15 -2.99 16 3 C 0.19 4.56 1.90 -27.88 -0.05 4.51 16 4 H 0.05 1.21 4.31 -51.92 -0.22 0.98 16 5 C -0.52 -14.51 9.25 -34.44 -0.32 -14.83 16 6 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 8 N -0.88 -25.94 13.96 55.43 0.77 -25.16 16 9 Si 0.87 21.15 26.99 -169.99 -4.59 16.56 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.26 -6.14 6.82 56.52 0.39 -5.75 16 13 O -0.35 -7.62 9.81 -39.27 -0.39 -8.01 16 14 C 0.45 8.21 6.44 36.00 0.23 8.44 16 15 O -0.52 -10.58 13.13 -18.75 -0.25 -10.82 16 16 C -0.11 -1.39 5.81 -27.88 -0.16 -1.55 16 17 C -0.12 -1.21 4.62 -26.73 -0.12 -1.33 16 18 C 0.12 1.07 5.67 -4.04 -0.02 1.04 16 19 N -0.72 -6.07 5.51 -61.25 -0.34 -6.41 16 20 C 0.56 5.76 7.78 -12.33 -0.10 5.67 16 21 O -0.53 -7.26 16.42 5.32 0.09 -7.17 16 22 C -0.19 -1.59 5.89 -104.83 -0.62 -2.20 16 23 C -0.02 -0.12 9.72 -38.87 -0.38 -0.50 16 24 C -0.18 -0.97 10.10 -39.49 -0.40 -1.37 16 25 C 0.12 0.74 11.17 -17.46 -0.20 0.54 16 26 N -0.49 -4.07 10.35 -12.91 -0.13 -4.20 16 27 C 0.14 1.03 10.71 -17.14 -0.18 0.85 16 28 H 0.04 0.78 6.05 -51.93 -0.31 0.47 16 29 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.05 1.06 7.83 -51.93 -0.41 0.65 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 0.85 8.10 -51.92 -0.42 0.43 16 37 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 2.46 6.54 -40.82 -0.27 2.20 16 41 H 0.15 1.03 7.74 -52.49 -0.41 0.62 16 42 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 43 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.16 0.84 6.42 -52.49 -0.34 0.51 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -34.57 370.49 -7.67 -42.24 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.17 Total: 1.39 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.25 Total: -4.00 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.30 Total: -35.77 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.54 Total: -26.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.59 Total: 16.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.57 -7.67 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188007183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.049 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds