Wall clock time and date at job start Tue Mar 31 2020 12:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 H 1.09007 * 109.46903 * 305.58385 * 3 2 1 5 5 C 1.50702 * 109.47133 * 185.59075 * 3 2 1 6 6 H 1.08000 * 119.99593 * 274.99404 * 5 3 2 7 7 C 1.37881 * 120.00188 * 94.98729 * 5 3 2 8 8 N 1.31513 * 119.99687 * 184.83822 * 7 5 3 9 9 Si 1.86794 * 120.00115 * 4.84413 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.86299 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.86520 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86718 * 9 7 5 13 13 O 1.45191 * 109.47422 * 65.58765 * 3 2 1 14 14 C 1.34235 * 117.00168 * 269.99917 * 13 3 2 15 15 O 1.20827 * 119.99857 * 0.02562 * 14 13 3 16 16 C 1.50694 * 119.99977 * 179.97438 * 14 13 3 17 17 C 1.53008 * 109.47083 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47133 * 180.02562 * 17 16 14 19 19 N 1.46505 * 109.46826 * 180.02562 * 18 17 16 20 20 C 1.34779 * 120.00031 * 179.97438 * 19 18 17 21 21 O 1.21557 * 119.99465 * 0.02562 * 20 19 18 22 22 C 1.47837 * 119.99891 * 179.97438 * 20 19 18 23 23 C 1.40025 * 120.55407 * 179.72054 * 22 20 19 24 24 C 1.38358 * 118.28694 * 179.73617 * 23 22 20 25 25 C 1.38362 * 119.29990 * 0.56675 * 24 23 22 26 26 N 1.31928 * 121.07767 * 359.69437 * 25 24 23 27 27 C 1.31695 * 121.88014 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47131 * 299.99945 * 1 2 3 29 29 H 1.09007 * 109.46616 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47225 * 60.00388 * 1 2 3 31 31 H 1.09004 * 109.47353 * 119.99183 * 2 1 3 32 32 H 1.09001 * 109.47596 * 239.99800 * 2 1 3 33 33 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47794 * 299.99786 * 16 14 13 35 35 H 1.09001 * 109.47335 * 60.00575 * 16 14 13 36 36 H 1.09010 * 109.46807 * 300.00286 * 17 16 14 37 37 H 1.08993 * 109.46850 * 59.99739 * 17 16 14 38 38 H 1.08993 * 109.47118 * 299.99516 * 18 17 16 39 39 H 1.08997 * 109.46981 * 60.00328 * 18 17 16 40 40 H 0.96997 * 120.00163 * 359.97438 * 19 18 17 41 41 H 1.07993 * 120.85911 * 0.02562 * 23 22 20 42 42 H 1.07993 * 120.35371 * 180.26467 * 24 23 22 43 43 H 1.07995 * 119.45628 * 179.72111 * 25 24 23 44 44 H 1.07998 * 119.71201 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5972 1.9844 -0.8358 5 6 3.5406 1.4449 -0.1384 6 1 4.1637 1.3341 0.7367 7 6 4.1180 1.5883 -1.3823 8 7 5.4230 1.4952 -1.5160 9 14 3.0467 1.9150 -2.8772 10 1 2.7807 3.3720 -2.9867 11 1 3.7470 1.4464 -4.1000 12 1 1.7607 1.1866 -2.7335 13 8 1.6678 2.0875 1.2465 14 6 0.4848 2.7212 1.2754 15 8 -0.2167 2.7360 0.2917 16 6 0.0313 3.4130 2.5349 17 6 -1.3399 4.0506 2.3011 18 6 -1.8001 4.7536 3.5797 19 7 -3.1132 5.3636 3.3559 20 6 -3.7200 6.0408 4.3508 21 8 -3.1775 6.1458 5.4335 22 6 -5.0448 6.6568 4.1248 23 6 -5.6884 7.3579 5.1519 24 6 -6.9245 7.9203 4.8873 25 6 -7.4852 7.7633 3.6322 26 7 -6.8578 7.0925 2.6851 27 6 -5.6777 6.5439 2.8866 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 5.8292 1.5957 -2.3911 34 1 -0.0399 2.6857 3.3436 35 1 0.7508 4.1864 2.8039 36 1 -1.2691 4.7780 1.4922 37 1 -2.0591 3.2771 2.0322 38 1 -1.8707 4.0267 4.3887 39 1 -1.0807 5.5273 3.8480 40 1 -3.5459 5.2801 2.4918 41 1 -5.2296 7.4611 6.1241 42 1 -7.4485 8.4718 5.6539 43 1 -8.4520 8.1974 3.4243 44 1 -5.1953 6.0026 2.0861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188007183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:24 Heat of formation + Delta-G solvation = -127.288416 kcal Electronic energy + Delta-G solvation = -25611.363461 eV Core-core repulsion = 21720.353617 eV Total energy + Delta-G solvation = -3891.009844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64625 -41.39307 -40.06193 -37.92059 -36.69874 -35.32747 -34.19745 -33.82797 -33.52033 -32.29423 -29.88668 -28.40914 -25.59964 -24.88185 -24.51186 -23.38928 -22.23817 -21.75965 -21.09064 -19.40162 -19.15319 -18.37133 -17.91199 -17.66462 -17.48268 -17.14076 -16.68816 -16.42617 -16.11128 -15.64932 -15.64598 -14.99450 -14.84213 -14.68361 -14.51170 -14.15186 -14.09788 -13.98913 -13.48331 -13.37036 -13.31367 -13.14590 -13.03005 -12.90092 -12.61451 -12.43905 -11.98140 -11.91764 -11.84673 -11.45609 -11.37640 -11.21554 -11.00376 -11.00049 -10.77763 -10.50632 -10.37378 -10.09019 -8.46778 -6.56004 -0.41398 0.18360 1.24972 1.28455 1.39020 1.41483 1.75466 1.84172 2.19470 2.22737 2.82153 2.91161 3.28666 3.66467 3.72974 3.78617 3.91646 3.96762 3.98863 4.01107 4.19108 4.21734 4.27397 4.42399 4.44507 4.51786 4.59254 4.64466 4.65932 4.73768 4.98613 5.02608 5.08003 5.08785 5.10056 5.13456 5.17240 5.31716 5.36638 5.49687 5.56165 5.75898 6.21683 6.37284 6.52859 6.82113 6.99253 7.04479 7.14169 8.68598 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024307 B = 0.002049 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.633030 B =13665.196855 C =13984.444776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.190 3.810 4 H 0.038 0.962 5 C -0.532 4.532 6 H 0.045 0.955 7 C 0.032 3.968 8 N -0.924 5.924 9 Si 0.930 3.070 10 H -0.269 1.269 11 H -0.269 1.269 12 H -0.248 1.248 13 O -0.364 6.364 14 C 0.444 3.556 15 O -0.543 6.543 16 C -0.107 4.107 17 C -0.108 4.108 18 C 0.125 3.875 19 N -0.713 5.713 20 C 0.562 3.438 21 O -0.574 6.574 22 C -0.203 4.203 23 C -0.030 4.030 24 C -0.170 4.170 25 C 0.118 3.882 26 N -0.512 5.512 27 C 0.132 3.868 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.275 0.725 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.414 0.586 41 H 0.147 0.853 42 H 0.175 0.825 43 H 0.191 0.809 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.718 11.084 11.233 31.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.137 3.863 4 H 0.056 0.944 5 C -0.570 4.570 6 H 0.063 0.937 7 C -0.169 4.169 8 N -0.562 5.562 9 Si 0.752 3.248 10 H -0.194 1.194 11 H -0.194 1.194 12 H -0.172 1.172 13 O -0.281 6.281 14 C 0.289 3.711 15 O -0.434 6.434 16 C -0.145 4.145 17 C -0.146 4.146 18 C 0.001 3.999 19 N -0.365 5.365 20 C 0.350 3.650 21 O -0.455 6.455 22 C -0.208 4.208 23 C -0.056 4.056 24 C -0.189 4.189 25 C -0.037 4.037 26 N -0.221 5.221 27 C -0.026 4.026 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.251 0.749 41 H 0.164 0.836 42 H 0.193 0.807 43 H 0.208 0.792 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -26.710 11.025 10.725 30.822 hybrid contribution 0.669 0.061 -0.472 0.821 sum -26.041 11.086 10.253 30.103 Atomic orbital electron populations 1.21807 0.94929 1.01661 1.01188 1.22017 0.95806 0.96886 1.02207 1.20780 0.93677 0.90506 0.81357 0.94446 1.20977 0.89963 1.51422 0.94593 0.93666 1.25693 0.96144 0.93459 1.01575 1.69969 1.11274 1.49218 1.25752 0.86002 0.79958 0.79748 0.79060 1.19417 1.19438 1.17186 1.86607 1.36524 1.63138 1.41794 1.24446 0.79233 0.76045 0.91391 1.90579 1.55263 1.59493 1.38108 1.21354 0.98575 1.01707 0.92837 1.21468 0.95205 1.00692 0.97259 1.21330 0.83507 0.97495 0.97542 1.45831 1.20870 1.54204 1.15595 1.18298 0.85016 0.77948 0.83752 1.90774 1.66956 1.61611 1.26152 1.20962 0.96575 1.05531 0.97771 1.21971 0.94048 0.90716 0.98881 1.22526 0.95593 1.01147 0.99657 1.23635 0.99925 0.91585 0.88603 1.67785 1.09228 1.09877 1.35214 1.23255 0.90606 0.93940 0.94786 0.93443 0.91103 0.93753 0.91714 0.91716 0.91552 0.85424 0.86128 0.90534 0.89943 0.90516 0.90899 0.74875 0.83554 0.80723 0.79185 0.80744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 8.57 71.98 0.62 -4.27 16 2 C -0.13 -5.54 5.63 30.59 0.17 -5.36 16 3 C 0.19 9.26 1.90 29.85 0.06 9.31 16 4 H 0.04 1.89 4.31 -2.38 -0.01 1.88 16 5 C -0.53 -30.56 9.25 25.60 0.24 -30.33 16 6 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 7 C 0.03 1.83 5.47 84.66 0.46 2.30 16 8 N -0.92 -55.80 13.96 21.45 0.30 -55.50 16 9 Si 0.93 43.68 26.99 68.60 1.85 45.53 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.25 -11.11 6.82 99.48 0.68 -10.43 16 13 O -0.36 -15.88 9.81 -51.46 -0.51 -16.38 16 14 C 0.44 15.55 6.44 71.23 0.46 16.01 16 15 O -0.54 -21.04 13.13 21.96 0.29 -20.75 16 16 C -0.11 -2.35 5.81 29.85 0.17 -2.17 16 17 C -0.11 -1.92 4.62 30.60 0.14 -1.78 16 18 C 0.12 2.02 5.67 86.38 0.49 2.51 16 19 N -0.71 -11.01 5.51 -465.98 -2.57 -13.58 16 20 C 0.56 11.18 7.78 86.78 0.68 11.85 16 21 O -0.57 -15.61 16.42 -3.90 -0.06 -15.67 16 22 C -0.20 -3.28 5.89 -20.00 -0.12 -3.39 16 23 C -0.03 -0.41 9.72 22.73 0.22 -0.19 16 24 C -0.17 -1.44 10.10 22.33 0.23 -1.22 16 25 C 0.12 1.16 11.17 84.71 0.95 2.11 16 26 N -0.51 -7.68 10.35 -194.76 -2.01 -9.70 16 27 C 0.13 1.85 10.71 85.02 0.91 2.76 16 28 H 0.05 1.61 6.05 -2.39 -0.01 1.59 16 29 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.04 1.64 7.83 -2.39 -0.02 1.62 16 31 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 32 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 37 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.41 4.37 6.54 -92.71 -0.61 3.76 16 41 H 0.15 1.99 7.74 -2.91 -0.02 1.96 16 42 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 43 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 44 H 0.18 1.60 6.42 -2.91 -0.02 1.58 16 Total: -1.00 -76.77 370.49 3.34 -73.42 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.39 Total: 14.49 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.67 Total: -1.85 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -4.28 Total: -78.79 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.28 Total: -52.81 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.85 Total: 45.53 kcal Total: -76.77 3.34 -73.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188007183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.864 kcal (2) G-P(sol) polarization free energy of solvation -76.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds