Wall clock time and date at job start Tue Mar 31 2020 12:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47315 * 2 1 4 4 H 1.09000 * 109.46888 * 54.99910 * 3 2 1 5 5 C 1.52998 * 109.47139 * 174.99977 * 3 2 1 6 6 O 1.42908 * 109.46697 * 294.99956 * 3 2 1 7 7 C 1.35685 * 116.99564 * 149.99715 * 6 3 2 8 8 C 1.38893 * 119.62246 * 180.27372 * 7 6 3 9 9 C 1.39572 * 118.94703 * 180.23001 * 8 7 6 10 10 C 1.48165 * 120.89391 * 179.78035 * 9 8 7 11 11 O 1.21518 * 119.99736 * 353.09640 * 10 9 8 12 12 N 1.34774 * 120.00062 * 173.08927 * 10 9 8 13 13 C 1.47584 * 134.49208 * 174.49045 * 12 10 9 14 14 C 1.53939 * 86.11616 * 155.36164 * 13 12 10 15 15 O 1.42901 * 113.74547 * 269.15797 * 14 13 12 16 16 C 1.50706 * 113.74088 * 137.95208 * 14 13 12 17 17 H 1.08002 * 119.99792 * 1.93024 * 16 14 13 18 18 C 1.37877 * 120.00082 * 181.92555 * 16 14 13 19 19 N 1.31515 * 119.99960 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99963 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46981 * 269.99596 * 20 18 16 22 22 H 1.48498 * 109.47192 * 29.99900 * 20 18 16 23 23 H 1.48499 * 109.47241 * 150.00223 * 20 18 16 24 24 C 1.47812 * 134.45853 * 354.36528 * 12 10 9 25 25 C 1.39972 * 118.21693 * 359.50973 * 9 8 7 26 26 C 1.37974 * 119.12994 * 0.24888 * 25 9 8 27 27 N 1.31906 * 120.98064 * 0.02562 * 26 25 9 28 28 H 1.09005 * 109.47221 * 60.00091 * 1 2 3 29 29 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47414 * 300.00102 * 1 2 3 31 31 H 1.09002 * 109.46943 * 240.00146 * 2 1 3 32 32 H 1.08995 * 109.47091 * 120.00437 * 2 1 3 33 33 H 1.09001 * 109.46590 * 179.97438 * 5 3 2 34 34 H 1.08994 * 109.47455 * 299.99731 * 5 3 2 35 35 H 1.09009 * 109.46740 * 60.00343 * 5 3 2 36 36 H 1.08005 * 120.52711 * 0.02562 * 8 7 6 37 37 H 1.08999 * 113.76594 * 41.06311 * 13 12 10 38 38 H 1.09000 * 113.87159 * 269.67988 * 13 12 10 39 39 H 0.96697 * 114.00405 * 178.07607 * 15 14 13 40 40 H 0.97000 * 119.99971 * 180.02562 * 19 18 16 41 41 H 1.09002 * 113.76663 * 90.37213 * 24 12 10 42 42 H 1.08996 * 113.83380 * 318.91757 * 24 12 10 43 43 H 1.07997 * 120.43457 * 180.23034 * 25 9 8 44 44 H 1.08001 * 119.50897 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0813 -1.2211 7 6 1.4505 3.4208 -1.1757 8 6 1.0753 4.0962 -2.3299 9 6 0.8663 5.4748 -2.2683 10 6 0.4699 6.2388 -3.4742 11 8 0.4443 5.6916 -4.5589 12 7 0.1375 7.5406 -3.3681 13 6 -0.1956 8.6051 -4.3346 14 6 -0.9639 9.2701 -3.1781 15 8 -2.3372 8.8824 -3.1016 16 6 -0.7694 10.7625 -3.0994 17 1 -0.1618 11.2674 -3.8358 18 6 -1.3671 11.4831 -2.0873 19 7 -2.1067 10.8681 -1.1903 20 14 -1.1266 13.3330 -1.9901 21 1 0.0683 13.6339 -1.1614 22 1 -0.9314 13.8793 -3.3571 23 1 -2.3256 13.9564 -1.3745 24 6 -0.0419 8.4744 -2.2364 25 6 1.0355 6.1153 -1.0352 26 6 1.4048 5.3684 0.0645 27 7 1.5992 4.0674 -0.0325 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9281 2.4719 0.1253 34 1 3.8532 0.9570 1.0571 35 1 3.9994 0.9052 -0.7162 36 1 0.9506 3.5635 -3.2612 37 1 -0.8347 8.2718 -5.1522 38 1 0.6673 9.1774 -4.6753 39 1 -2.8159 9.2752 -2.3589 40 1 -2.5275 11.3752 -0.4785 41 1 0.8674 9.0072 -1.9582 42 1 -0.5583 8.0370 -1.3821 43 1 0.8793 7.1802 -0.9459 44 1 1.5367 5.8563 1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189546947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:40 Heat of formation + Delta-G solvation = -50.664024 kcal Electronic energy + Delta-G solvation = -26853.998718 eV Core-core repulsion = 22966.311557 eV Total energy + Delta-G solvation = -3887.687161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.82682 -39.63160 -38.29215 -37.28958 -34.42214 -34.05748 -32.53572 -32.28546 -30.61730 -29.87866 -28.70827 -25.81669 -25.58889 -24.48798 -23.66533 -23.12052 -21.40696 -20.18294 -19.19032 -18.05318 -17.43911 -16.97720 -16.19473 -15.79852 -15.68671 -15.22929 -15.12515 -14.77442 -14.57461 -14.21720 -14.14871 -13.98361 -13.82827 -13.36254 -13.24303 -12.81705 -12.68019 -12.46834 -12.13956 -12.05215 -11.97327 -11.78914 -11.63618 -11.33189 -11.16465 -11.05944 -10.93002 -10.80677 -10.58049 -10.37064 -10.01758 -9.80323 -9.55071 -9.34285 -8.84371 -8.51888 -8.45807 -7.97082 -6.45817 -4.56330 0.84305 1.19968 2.83973 3.10433 3.19163 3.19809 3.22789 3.41285 3.96799 4.13647 4.24046 4.50717 4.64415 4.73275 4.79717 4.87694 4.99002 5.08629 5.16637 5.17920 5.32854 5.36463 5.47767 5.54997 5.68732 5.68910 5.71540 5.78839 5.85381 5.91002 5.95216 6.05725 6.08112 6.18830 6.29400 6.31325 6.37539 6.51897 6.60283 6.99922 7.23992 7.56518 7.74029 7.80171 8.27743 8.47255 8.55653 9.15062 9.35381 10.60936 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.002763 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.976814 B =10129.726512 C =10544.016037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.169 4.169 6 O -0.299 6.299 7 C 0.316 3.684 8 C -0.139 4.139 9 C -0.038 4.038 10 C 0.569 3.431 11 O -0.551 6.551 12 N -0.621 5.621 13 C 0.113 3.887 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.538 4.538 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.271 1.271 23 H -0.283 1.283 24 C 0.070 3.930 25 C -0.187 4.187 26 C 0.133 3.867 27 N -0.531 5.531 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.150 0.850 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.392 0.608 40 H 0.274 0.726 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.157 0.843 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.508 -13.399 6.609 16.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.028 3.972 4 H 0.108 0.892 5 C -0.226 4.226 6 O -0.206 6.206 7 C 0.137 3.863 8 C -0.161 4.161 9 C -0.049 4.049 10 C 0.357 3.643 11 O -0.431 6.431 12 N -0.354 5.354 13 C -0.008 4.008 14 C 0.198 3.802 15 O -0.383 6.383 16 C -0.576 4.576 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.195 1.195 23 H -0.209 1.209 24 C -0.052 4.052 25 C -0.208 4.208 26 C -0.022 4.022 27 N -0.255 5.255 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.168 0.832 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.247 0.753 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.175 0.825 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.795 -14.847 6.164 17.866 hybrid contribution -0.129 1.751 0.292 1.779 sum 7.666 -13.096 6.456 16.491 Atomic orbital electron populations 1.21765 0.95170 1.01749 1.02499 1.21682 0.96848 0.94324 1.02976 1.22400 0.95137 0.93059 0.86555 0.89190 1.22213 0.95172 1.02938 1.02292 1.86295 1.82617 1.15952 1.35765 1.19560 0.92639 0.84652 0.89470 1.21091 1.03171 0.93151 0.98661 1.20227 0.97172 0.93120 0.94381 1.17709 0.77781 0.81176 0.87596 1.90722 1.54991 1.68967 1.28429 1.50104 1.65050 1.06811 1.13401 1.23527 0.97868 0.84354 0.95050 1.19837 0.80420 0.91548 0.88352 1.86076 1.22439 1.74083 1.55686 1.21484 1.32059 0.91420 1.12639 0.90954 1.25069 0.93752 0.99708 0.94480 1.69395 1.32281 1.36813 1.15191 0.86328 0.77895 0.83684 0.78615 1.20297 1.19540 1.20898 1.24557 1.00716 0.87982 0.91992 1.22847 1.01932 1.03447 0.92537 1.22369 0.93425 0.87622 0.98748 1.67087 1.20132 1.11833 1.26457 0.92021 0.92511 0.92747 0.90981 0.90143 0.91907 0.91217 0.92043 0.83214 0.90776 0.89180 0.75290 0.91613 0.89433 0.90487 0.82536 0.81843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.81 37.16 0.36 -1.02 16 2 C -0.12 -1.03 5.64 -26.73 -0.15 -1.18 16 3 C 0.08 0.90 2.49 -26.73 -0.07 0.84 16 4 H 0.09 1.02 6.98 -51.93 -0.36 0.66 16 5 C -0.17 -1.58 9.53 37.16 0.35 -1.22 16 6 O -0.30 -4.06 9.30 -18.76 -0.17 -4.23 16 7 C 0.32 4.72 7.45 -17.16 -0.13 4.59 16 8 C -0.14 -2.28 9.61 -38.84 -0.37 -2.65 16 9 C -0.04 -0.67 5.91 -104.67 -0.62 -1.29 16 10 C 0.57 11.70 8.01 -12.18 -0.10 11.61 16 11 O -0.55 -12.73 17.20 5.35 0.09 -12.64 16 12 N -0.62 -12.72 3.60 -179.12 -0.65 -13.36 16 13 C 0.11 2.37 8.23 -2.97 -0.02 2.35 16 14 C 0.24 5.47 1.40 -90.85 -0.13 5.34 16 15 O -0.57 -14.15 13.48 -35.23 -0.48 -14.63 16 16 C -0.54 -12.81 8.61 -34.44 -0.30 -13.11 16 17 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.07 1.73 5.39 -17.82 -0.10 1.63 16 19 N -0.90 -21.63 11.20 55.43 0.62 -21.01 16 20 Si 0.91 18.71 29.54 -169.99 -5.02 13.69 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 C 0.07 1.39 5.66 -2.84 -0.02 1.37 16 25 C -0.19 -2.83 9.16 -39.03 -0.36 -3.19 16 26 C 0.13 1.76 11.17 -17.62 -0.20 1.56 16 27 N -0.53 -7.48 8.61 -13.38 -0.12 -7.60 16 28 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.15 2.45 7.75 -52.48 -0.41 2.04 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 39 H 0.39 9.77 6.60 45.56 0.30 10.07 16 40 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 41 H 0.09 1.63 8.02 -51.93 -0.42 1.21 16 42 H 0.08 1.52 6.90 -51.93 -0.36 1.16 16 43 H 0.16 2.33 4.26 -52.49 -0.22 2.11 16 44 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -27.71 368.07 -7.65 -35.36 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.64 Total: 13.24 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.83 Total: 5.63 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.14 Total: -41.97 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.56 Total: -31.50 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.71 -7.65 -35.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189546947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.306 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds