Wall clock time and date at job start Tue Mar 31 2020 12:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47315 * 2 1 4 4 H 1.09000 * 109.46888 * 54.99910 * 3 2 1 5 5 C 1.52998 * 109.47139 * 174.99977 * 3 2 1 6 6 O 1.42908 * 109.46697 * 294.99956 * 3 2 1 7 7 C 1.35685 * 116.99564 * 149.99715 * 6 3 2 8 8 C 1.38893 * 119.62246 * 180.27372 * 7 6 3 9 9 C 1.39572 * 118.94703 * 180.23001 * 8 7 6 10 10 C 1.48165 * 120.89391 * 179.78035 * 9 8 7 11 11 O 1.21518 * 119.99736 * 353.09640 * 10 9 8 12 12 N 1.34774 * 120.00062 * 173.08927 * 10 9 8 13 13 C 1.47584 * 134.49208 * 174.49045 * 12 10 9 14 14 C 1.53939 * 86.11616 * 155.36164 * 13 12 10 15 15 O 1.42901 * 113.74547 * 269.15797 * 14 13 12 16 16 C 1.50706 * 113.74088 * 137.95208 * 14 13 12 17 17 H 1.08002 * 119.99792 * 1.93024 * 16 14 13 18 18 C 1.37877 * 120.00082 * 181.92555 * 16 14 13 19 19 N 1.31515 * 119.99960 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99963 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46981 * 269.99596 * 20 18 16 22 22 H 1.48498 * 109.47192 * 29.99900 * 20 18 16 23 23 H 1.48499 * 109.47241 * 150.00223 * 20 18 16 24 24 C 1.47812 * 134.45853 * 354.36528 * 12 10 9 25 25 C 1.39972 * 118.21693 * 359.50973 * 9 8 7 26 26 C 1.37974 * 119.12994 * 0.24888 * 25 9 8 27 27 N 1.31906 * 120.98064 * 0.02562 * 26 25 9 28 28 H 1.09005 * 109.47221 * 60.00091 * 1 2 3 29 29 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47414 * 300.00102 * 1 2 3 31 31 H 1.09002 * 109.46943 * 240.00146 * 2 1 3 32 32 H 1.08995 * 109.47091 * 120.00437 * 2 1 3 33 33 H 1.09001 * 109.46590 * 179.97438 * 5 3 2 34 34 H 1.08994 * 109.47455 * 299.99731 * 5 3 2 35 35 H 1.09009 * 109.46740 * 60.00343 * 5 3 2 36 36 H 1.08005 * 120.52711 * 0.02562 * 8 7 6 37 37 H 1.08999 * 113.76594 * 41.06311 * 13 12 10 38 38 H 1.09000 * 113.87159 * 269.67988 * 13 12 10 39 39 H 0.96697 * 114.00405 * 178.07607 * 15 14 13 40 40 H 0.97000 * 119.99971 * 180.02562 * 19 18 16 41 41 H 1.09002 * 113.76663 * 90.37213 * 24 12 10 42 42 H 1.08996 * 113.83380 * 318.91757 * 24 12 10 43 43 H 1.07997 * 120.43457 * 180.23034 * 25 9 8 44 44 H 1.08001 * 119.50897 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0813 -1.2211 7 6 1.4505 3.4208 -1.1757 8 6 1.0753 4.0962 -2.3299 9 6 0.8663 5.4748 -2.2683 10 6 0.4699 6.2388 -3.4742 11 8 0.4443 5.6916 -4.5589 12 7 0.1375 7.5406 -3.3681 13 6 -0.1956 8.6051 -4.3346 14 6 -0.9639 9.2701 -3.1781 15 8 -2.3372 8.8824 -3.1016 16 6 -0.7694 10.7625 -3.0994 17 1 -0.1618 11.2674 -3.8358 18 6 -1.3671 11.4831 -2.0873 19 7 -2.1067 10.8681 -1.1903 20 14 -1.1266 13.3330 -1.9901 21 1 0.0683 13.6339 -1.1614 22 1 -0.9314 13.8793 -3.3571 23 1 -2.3256 13.9564 -1.3745 24 6 -0.0419 8.4744 -2.2364 25 6 1.0355 6.1153 -1.0352 26 6 1.4048 5.3684 0.0645 27 7 1.5992 4.0674 -0.0325 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9281 2.4719 0.1253 34 1 3.8532 0.9570 1.0571 35 1 3.9994 0.9052 -0.7162 36 1 0.9506 3.5635 -3.2612 37 1 -0.8347 8.2718 -5.1522 38 1 0.6673 9.1774 -4.6753 39 1 -2.8159 9.2752 -2.3589 40 1 -2.5275 11.3752 -0.4785 41 1 0.8674 9.0072 -1.9582 42 1 -0.5583 8.0370 -1.3821 43 1 0.8793 7.1802 -0.9459 44 1 1.5367 5.8563 1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189546947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:36 Heat of formation + Delta-G solvation = -69.549766 kcal Electronic energy + Delta-G solvation = -26854.817665 eV Core-core repulsion = 22966.311557 eV Total energy + Delta-G solvation = -3888.506108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -42.06192 -41.11819 -39.51961 -38.85815 -35.90498 -35.21872 -34.13928 -33.81933 -31.67669 -30.74464 -30.35312 -27.48978 -27.22118 -25.61398 -24.71770 -24.23679 -22.51304 -21.54994 -20.61558 -19.55729 -19.03470 -18.30723 -17.64159 -17.08333 -16.90598 -16.78006 -16.51818 -16.35222 -15.92898 -15.53720 -15.23319 -14.96772 -14.93102 -14.72162 -14.46283 -14.20489 -14.07662 -13.81226 -13.55433 -13.41373 -13.11997 -12.91333 -12.79297 -12.70327 -12.67649 -12.24830 -12.20758 -12.04660 -11.79616 -11.64623 -11.53838 -11.11906 -11.08645 -10.78433 -10.64083 -10.21785 -9.66280 -9.61613 -8.25014 -6.41403 -0.45907 0.04005 1.48640 1.52874 1.59584 1.62971 1.72584 2.04230 2.42584 2.70489 2.97059 3.13698 3.27882 3.69904 3.75213 3.82363 3.91062 3.98154 3.99138 4.12180 4.18716 4.38709 4.43225 4.52434 4.56169 4.60375 4.66503 4.67580 4.74329 4.78393 4.83718 4.90379 5.00184 5.01727 5.04067 5.11482 5.20611 5.22725 5.34697 5.36801 5.74553 5.93356 6.19256 6.64096 6.65214 6.66480 6.92830 7.31663 7.45057 8.81062 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.002763 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.976814 B =10129.726512 C =10544.016037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C 0.076 3.924 4 H 0.085 0.915 5 C -0.164 4.164 6 O -0.308 6.308 7 C 0.319 3.681 8 C -0.154 4.154 9 C -0.055 4.055 10 C 0.563 3.437 11 O -0.586 6.586 12 N -0.622 5.622 13 C 0.112 3.888 14 C 0.220 3.780 15 O -0.587 6.587 16 C -0.554 4.554 17 H 0.073 0.927 18 C 0.036 3.964 19 N -0.913 5.913 20 Si 0.966 3.034 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.286 1.286 24 C 0.087 3.913 25 C -0.188 4.188 26 C 0.148 3.852 27 N -0.525 5.525 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.140 0.860 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.388 0.612 40 H 0.276 0.724 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.161 0.839 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.773 -13.635 8.775 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.021 3.979 4 H 0.103 0.897 5 C -0.221 4.221 6 O -0.216 6.216 7 C 0.140 3.860 8 C -0.176 4.176 9 C -0.065 4.065 10 C 0.354 3.646 11 O -0.469 6.469 12 N -0.354 5.354 13 C -0.010 4.010 14 C 0.179 3.821 15 O -0.399 6.399 16 C -0.592 4.592 17 H 0.091 0.909 18 C -0.165 4.165 19 N -0.553 5.553 20 Si 0.792 3.208 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.212 1.212 24 C -0.035 4.035 25 C -0.208 4.208 26 C -0.008 4.008 27 N -0.250 5.250 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.158 0.842 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.243 0.757 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.178 0.822 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 9.071 -15.100 8.336 19.488 hybrid contribution -0.540 1.761 -0.357 1.876 sum 8.531 -13.339 7.979 17.730 Atomic orbital electron populations 1.21769 0.95727 1.02436 1.01309 1.21723 0.96310 0.92998 1.04340 1.22725 0.96171 0.93890 0.85126 0.89698 1.22192 0.93948 1.02295 1.03709 1.86298 1.82394 1.15250 1.37630 1.19543 0.91989 0.85291 0.89148 1.21036 1.04418 0.93004 0.99108 1.20031 0.99037 0.93390 0.94052 1.18213 0.77051 0.81067 0.88280 1.90688 1.56584 1.69559 1.30044 1.50112 1.64922 1.06932 1.13420 1.23582 0.98303 0.84680 0.94419 1.20120 0.79911 0.91869 0.90246 1.86067 1.23841 1.74269 1.55697 1.21675 1.32517 0.92088 1.12935 0.90881 1.25688 0.93521 1.03070 0.94205 1.69454 1.32513 1.37926 1.15418 0.85425 0.77739 0.79398 0.78276 1.19539 1.19820 1.21151 1.24412 1.00624 0.87121 0.91323 1.22896 1.02108 1.03678 0.92115 1.22998 0.91064 0.87123 0.99568 1.67246 1.19814 1.12203 1.25729 0.94332 0.90933 0.92782 0.90861 0.87424 0.93433 0.88719 0.91884 0.84230 0.92076 0.87108 0.75742 0.91433 0.87674 0.90256 0.82211 0.77781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.81 71.98 0.71 -1.88 16 2 C -0.12 -1.73 5.64 30.59 0.17 -1.56 16 3 C 0.08 1.50 2.49 30.59 0.08 1.58 16 4 H 0.08 1.76 6.98 -2.39 -0.02 1.74 16 5 C -0.16 -2.72 9.53 71.98 0.69 -2.03 16 6 O -0.31 -8.19 9.30 -90.04 -0.84 -9.03 16 7 C 0.32 9.35 7.45 84.80 0.63 9.99 16 8 C -0.15 -5.12 9.61 22.75 0.22 -4.91 16 9 C -0.05 -1.91 5.91 -19.90 -0.12 -2.03 16 10 C 0.56 23.64 8.01 86.88 0.70 24.34 16 11 O -0.59 -28.03 17.20 -3.77 -0.06 -28.10 16 12 N -0.62 -25.57 3.60 -842.74 -3.04 -28.60 16 13 C 0.11 4.71 8.23 86.48 0.71 5.42 16 14 C 0.22 10.00 1.40 -10.88 -0.02 9.99 16 15 O -0.59 -29.54 13.48 -148.98 -2.01 -31.55 16 16 C -0.55 -26.10 8.61 25.60 0.22 -25.88 16 17 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 18 C 0.04 1.69 5.39 84.65 0.46 2.15 16 19 N -0.91 -43.45 11.20 21.45 0.24 -43.21 16 20 Si 0.97 37.56 29.54 68.60 2.03 39.59 16 21 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 23 H -0.29 -11.15 7.11 99.48 0.71 -10.44 16 24 C 0.09 3.40 5.66 86.44 0.49 3.89 16 25 C -0.19 -5.41 9.16 22.63 0.21 -5.20 16 26 C 0.15 3.51 11.17 84.62 0.94 4.46 16 27 N -0.53 -13.82 8.61 -309.14 -2.66 -16.48 16 28 H 0.04 0.81 7.82 -2.38 -0.02 0.79 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.14 4.82 7.75 -2.91 -0.02 4.80 16 37 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.11 4.14 8.09 -2.39 -0.02 4.12 16 39 H 0.39 19.65 6.60 -74.06 -0.49 19.16 16 40 H 0.28 12.49 8.31 -92.71 -0.77 11.72 16 41 H 0.11 3.74 8.02 -2.39 -0.02 3.72 16 42 H 0.08 3.06 6.90 -2.39 -0.02 3.05 16 43 H 0.16 4.47 4.26 -2.91 -0.01 4.46 16 44 H 0.21 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -59.61 368.07 0.28 -59.33 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: 0.53 Total: 39.73 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 6.08 Total: 18.32 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -5.46 Total: -88.30 kcal Atomic # 8 Polarization: -65.76 SS G_CDS: -2.91 Total: -68.67 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -59.61 0.28 -59.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189546947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.220 kcal (2) G-P(sol) polarization free energy of solvation -59.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds