Wall clock time and date at job start Tue Mar 31 2020 12:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 H 1.08990 * 109.47543 * 305.00769 * 3 2 1 5 5 C 1.53001 * 109.47321 * 184.99992 * 3 2 1 6 6 O 1.42908 * 109.46435 * 65.00805 * 3 2 1 7 7 C 1.35685 * 116.99564 * 209.99529 * 6 3 2 8 8 C 1.38893 * 119.62246 * 180.27372 * 7 6 3 9 9 C 1.39572 * 118.94703 * 180.23001 * 8 7 6 10 10 C 1.48165 * 120.89391 * 179.78035 * 9 8 7 11 11 O 1.21518 * 119.99736 * 353.09640 * 10 9 8 12 12 N 1.34774 * 120.00062 * 173.08927 * 10 9 8 13 13 C 1.47584 * 134.49208 * 174.49045 * 12 10 9 14 14 C 1.53939 * 86.11616 * 155.36164 * 13 12 10 15 15 O 1.42901 * 113.74547 * 269.15797 * 14 13 12 16 16 C 1.50706 * 113.74088 * 137.95208 * 14 13 12 17 17 H 1.08002 * 119.99792 * 1.93024 * 16 14 13 18 18 C 1.37877 * 120.00082 * 181.92555 * 16 14 13 19 19 N 1.31515 * 119.99960 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99963 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46978 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.46872 * 299.99764 * 20 18 16 23 23 H 1.48498 * 109.47286 * 59.99827 * 20 18 16 24 24 C 1.47812 * 134.45853 * 354.36528 * 12 10 9 25 25 C 1.39972 * 118.21693 * 359.50973 * 9 8 7 26 26 C 1.37974 * 119.12994 * 0.24888 * 25 9 8 27 27 N 1.31906 * 120.98064 * 0.02562 * 26 25 9 28 28 H 1.09004 * 109.46788 * 299.99241 * 1 2 3 29 29 H 1.08998 * 109.47315 * 59.99379 * 1 2 3 30 30 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46788 * 240.00759 * 2 1 3 32 32 H 1.09002 * 109.47701 * 120.00928 * 2 1 3 33 33 H 1.09008 * 109.46558 * 60.00607 * 5 3 2 34 34 H 1.08993 * 109.47087 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47098 * 300.01005 * 5 3 2 36 36 H 1.08005 * 120.52711 * 0.02562 * 8 7 6 37 37 H 1.08999 * 113.76594 * 41.06311 * 13 12 10 38 38 H 1.09000 * 113.87159 * 269.67988 * 13 12 10 39 39 H 0.96697 * 114.00405 * 178.07607 * 15 14 13 40 40 H 0.97000 * 119.99971 * 180.02562 * 19 18 16 41 41 H 1.09002 * 113.76663 * 90.37213 * 24 12 10 42 42 H 1.08996 * 113.83380 * 318.91757 * 24 12 10 43 43 H 1.07997 * 120.43457 * 180.23034 * 25 9 8 44 44 H 1.08004 * 119.50854 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8416 5 6 3.5649 1.4443 -0.1257 6 8 1.6621 2.0812 1.2212 7 6 1.4508 3.4208 1.1760 8 6 1.0868 4.0978 2.3328 9 6 0.8682 5.4749 2.2691 10 6 0.4738 6.2391 3.4756 11 8 0.2144 5.6531 4.5081 12 7 0.4028 7.5841 3.4280 13 6 -0.0389 8.6306 4.3703 14 6 0.8942 9.5769 3.5935 15 8 2.2217 9.6358 4.1193 16 6 0.3020 10.9393 3.3394 17 1 -0.6787 11.1816 3.7215 18 6 1.0121 11.8763 2.6191 19 7 2.2061 11.5810 2.1534 20 14 0.2783 13.5651 2.3048 21 1 1.2343 14.3807 1.5135 22 1 -0.9923 13.4200 1.5500 23 1 0.0098 14.2373 3.6014 24 6 0.7386 8.6032 2.4113 25 6 1.0373 6.1155 1.0361 26 6 1.4056 5.3685 -0.0639 27 7 1.5983 4.0672 0.0326 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 3.8532 0.9571 -1.0572 34 1 3.9282 2.4719 -0.1253 35 1 3.9995 0.9052 0.7160 36 1 0.9715 3.5667 3.2661 37 1 0.2724 8.4543 5.3999 38 1 -1.0950 8.8855 4.2830 39 1 2.8189 10.2065 3.6167 40 1 2.7058 12.2404 1.6470 41 1 -0.0889 8.8489 1.7457 42 1 1.6692 8.4051 1.8797 43 1 0.8811 7.1804 0.9470 44 1 1.5373 5.8565 -1.0184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189546970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:45 Heat of formation + Delta-G solvation = -50.626360 kcal Electronic energy + Delta-G solvation = -26846.120290 eV Core-core repulsion = 22958.434763 eV Total energy + Delta-G solvation = -3887.685528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82651 -39.63114 -38.29196 -37.28916 -34.42627 -34.05713 -32.53540 -32.28457 -30.61957 -29.87594 -28.70769 -25.81555 -25.58823 -24.48808 -23.66898 -23.12125 -21.40959 -20.18173 -19.19063 -18.05245 -17.44166 -16.97087 -16.20484 -15.80168 -15.66712 -15.21121 -15.14443 -14.79373 -14.56909 -14.21209 -14.15097 -13.96405 -13.85429 -13.37959 -13.23031 -12.76686 -12.71196 -12.47885 -12.13620 -12.04559 -11.97912 -11.79032 -11.63013 -11.34742 -11.14995 -11.07344 -10.92587 -10.81040 -10.59015 -10.37024 -10.02397 -9.79900 -9.55628 -9.34128 -8.83537 -8.52545 -8.45310 -7.97124 -6.45587 -4.56233 0.84332 1.19992 2.84017 3.12456 3.18979 3.19193 3.21514 3.41348 3.96803 4.13731 4.24073 4.50438 4.64419 4.73078 4.79792 4.86932 4.99082 5.08496 5.16703 5.18251 5.32303 5.36311 5.47954 5.55228 5.67133 5.69038 5.71312 5.78831 5.84775 5.90898 5.96829 6.05054 6.06974 6.18862 6.29429 6.31396 6.37633 6.51936 6.60320 6.99942 7.24033 7.56555 7.74064 7.80196 8.27792 8.47029 8.55685 9.15085 9.35477 10.61149 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.002752 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.749480 B =10172.201378 C =10671.756977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.169 4.169 6 O -0.299 6.299 7 C 0.316 3.684 8 C -0.139 4.139 9 C -0.038 4.038 10 C 0.569 3.431 11 O -0.551 6.551 12 N -0.621 5.621 13 C 0.113 3.887 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.539 4.539 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.273 1.273 23 H -0.273 1.273 24 C 0.070 3.930 25 C -0.187 4.187 26 C 0.133 3.867 27 N -0.531 5.531 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.150 0.850 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.392 0.608 40 H 0.274 0.726 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.157 0.843 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.422 -14.704 -8.388 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.029 3.971 4 H 0.108 0.892 5 C -0.227 4.227 6 O -0.206 6.206 7 C 0.137 3.863 8 C -0.161 4.161 9 C -0.049 4.049 10 C 0.357 3.643 11 O -0.431 6.431 12 N -0.354 5.354 13 C -0.008 4.008 14 C 0.199 3.801 15 O -0.383 6.383 16 C -0.577 4.577 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.052 4.052 25 C -0.208 4.208 26 C -0.022 4.022 27 N -0.255 5.255 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.168 0.832 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.247 0.753 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.175 0.825 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.405 -16.198 -8.010 18.075 hybrid contribution -0.213 1.740 -0.294 1.778 sum -0.618 -14.458 -8.305 16.685 Atomic orbital electron populations 1.21762 0.95228 1.01720 1.02429 1.21686 0.96794 0.94362 1.03007 1.22398 0.95189 0.93013 0.86525 0.89214 1.22216 0.95128 1.03025 1.02304 1.86294 1.82612 1.15958 1.35775 1.19560 0.92662 0.84642 0.89455 1.21091 1.03177 0.93187 0.98618 1.20227 0.97175 0.93083 0.94417 1.17709 0.78550 0.80943 0.87060 1.90722 1.52002 1.68800 1.31587 1.50103 1.61491 1.02881 1.20892 1.23527 0.99178 0.82932 0.95163 1.19832 0.82032 0.91423 0.86847 1.86076 1.22064 1.72276 1.57876 1.21445 1.03842 0.97319 1.35066 0.91004 1.25066 0.94697 0.99296 0.93919 1.69387 1.11767 1.36081 1.36462 0.86385 0.78957 0.82571 0.78604 1.20996 1.19877 1.19843 1.24556 0.99796 0.85378 0.95510 1.22847 1.02035 1.03212 0.92669 1.22369 0.93445 0.87598 0.98752 1.67087 1.20006 1.11865 1.26552 0.92048 0.92790 0.92526 0.90136 0.90957 0.91216 0.91843 0.92015 0.83215 0.90778 0.89180 0.75292 0.91552 0.89428 0.90489 0.82535 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.81 37.16 0.36 -0.97 16 2 C -0.12 -1.02 5.64 -26.73 -0.15 -1.17 16 3 C 0.09 0.91 2.49 -26.73 -0.07 0.84 16 4 H 0.09 1.01 6.98 -51.93 -0.36 0.65 16 5 C -0.17 -1.62 9.53 37.16 0.35 -1.27 16 6 O -0.30 -4.06 9.30 -18.76 -0.17 -4.23 16 7 C 0.32 4.72 7.45 -17.16 -0.13 4.59 16 8 C -0.14 -2.28 9.61 -38.84 -0.37 -2.65 16 9 C -0.04 -0.67 5.91 -104.67 -0.62 -1.29 16 10 C 0.57 11.71 8.01 -12.18 -0.10 11.61 16 11 O -0.55 -12.73 17.20 5.35 0.09 -12.64 16 12 N -0.62 -12.72 3.60 -179.12 -0.65 -13.37 16 13 C 0.11 2.37 8.23 -2.97 -0.02 2.35 16 14 C 0.24 5.48 1.40 -90.85 -0.13 5.35 16 15 O -0.57 -14.17 13.48 -35.23 -0.48 -14.64 16 16 C -0.54 -12.83 8.61 -34.44 -0.30 -13.13 16 17 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 19 N -0.90 -21.65 11.20 55.43 0.62 -21.03 16 20 Si 0.91 18.71 29.54 -169.99 -5.02 13.69 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C 0.07 1.39 5.66 -2.84 -0.02 1.38 16 25 C -0.19 -2.83 9.16 -39.03 -0.36 -3.19 16 26 C 0.13 1.76 11.17 -17.62 -0.20 1.56 16 27 N -0.53 -7.48 8.61 -13.38 -0.12 -7.60 16 28 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.15 2.45 7.75 -52.48 -0.41 2.04 16 37 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 39 H 0.39 9.78 6.60 45.56 0.30 10.08 16 40 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 41 H 0.09 1.63 8.02 -51.93 -0.42 1.21 16 42 H 0.08 1.52 6.90 -51.93 -0.36 1.16 16 43 H 0.16 2.33 4.26 -52.49 -0.22 2.11 16 44 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -27.71 368.07 -7.65 -35.36 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -5.64 Total: 13.26 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.83 Total: 5.65 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: -0.14 Total: -42.00 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.56 Total: -31.51 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.71 -7.65 -35.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189546970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.270 kcal (2) G-P(sol) polarization free energy of solvation -27.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds