Wall clock time and date at job start Tue Mar 31 2020 12:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 H 1.08990 * 109.47543 * 305.00769 * 3 2 1 5 5 C 1.53001 * 109.47321 * 184.99992 * 3 2 1 6 6 O 1.42908 * 109.46435 * 65.00805 * 3 2 1 7 7 C 1.35685 * 116.99564 * 209.99529 * 6 3 2 8 8 C 1.38893 * 119.62246 * 180.27372 * 7 6 3 9 9 C 1.39572 * 118.94703 * 180.23001 * 8 7 6 10 10 C 1.48165 * 120.89391 * 179.78035 * 9 8 7 11 11 O 1.21518 * 119.99736 * 353.09640 * 10 9 8 12 12 N 1.34774 * 120.00062 * 173.08927 * 10 9 8 13 13 C 1.47584 * 134.49208 * 174.49045 * 12 10 9 14 14 C 1.53939 * 86.11616 * 155.36164 * 13 12 10 15 15 O 1.42901 * 113.74547 * 269.15797 * 14 13 12 16 16 C 1.50706 * 113.74088 * 137.95208 * 14 13 12 17 17 H 1.08002 * 119.99792 * 1.93024 * 16 14 13 18 18 C 1.37877 * 120.00082 * 181.92555 * 16 14 13 19 19 N 1.31515 * 119.99960 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99963 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46978 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.46872 * 299.99764 * 20 18 16 23 23 H 1.48498 * 109.47286 * 59.99827 * 20 18 16 24 24 C 1.47812 * 134.45853 * 354.36528 * 12 10 9 25 25 C 1.39972 * 118.21693 * 359.50973 * 9 8 7 26 26 C 1.37974 * 119.12994 * 0.24888 * 25 9 8 27 27 N 1.31906 * 120.98064 * 0.02562 * 26 25 9 28 28 H 1.09004 * 109.46788 * 299.99241 * 1 2 3 29 29 H 1.08998 * 109.47315 * 59.99379 * 1 2 3 30 30 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46788 * 240.00759 * 2 1 3 32 32 H 1.09002 * 109.47701 * 120.00928 * 2 1 3 33 33 H 1.09008 * 109.46558 * 60.00607 * 5 3 2 34 34 H 1.08993 * 109.47087 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47098 * 300.01005 * 5 3 2 36 36 H 1.08005 * 120.52711 * 0.02562 * 8 7 6 37 37 H 1.08999 * 113.76594 * 41.06311 * 13 12 10 38 38 H 1.09000 * 113.87159 * 269.67988 * 13 12 10 39 39 H 0.96697 * 114.00405 * 178.07607 * 15 14 13 40 40 H 0.97000 * 119.99971 * 180.02562 * 19 18 16 41 41 H 1.09002 * 113.76663 * 90.37213 * 24 12 10 42 42 H 1.08996 * 113.83380 * 318.91757 * 24 12 10 43 43 H 1.07997 * 120.43457 * 180.23034 * 25 9 8 44 44 H 1.08004 * 119.50854 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8416 5 6 3.5649 1.4443 -0.1257 6 8 1.6621 2.0812 1.2212 7 6 1.4508 3.4208 1.1760 8 6 1.0868 4.0978 2.3328 9 6 0.8682 5.4749 2.2691 10 6 0.4738 6.2391 3.4756 11 8 0.2144 5.6531 4.5081 12 7 0.4028 7.5841 3.4280 13 6 -0.0389 8.6306 4.3703 14 6 0.8942 9.5769 3.5935 15 8 2.2217 9.6358 4.1193 16 6 0.3020 10.9393 3.3394 17 1 -0.6787 11.1816 3.7215 18 6 1.0121 11.8763 2.6191 19 7 2.2061 11.5810 2.1534 20 14 0.2783 13.5651 2.3048 21 1 1.2343 14.3807 1.5135 22 1 -0.9923 13.4200 1.5500 23 1 0.0098 14.2373 3.6014 24 6 0.7386 8.6032 2.4113 25 6 1.0373 6.1155 1.0361 26 6 1.4056 5.3685 -0.0639 27 7 1.5983 4.0672 0.0326 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 3.8532 0.9571 -1.0572 34 1 3.9282 2.4719 -0.1253 35 1 3.9995 0.9052 0.7160 36 1 0.9715 3.5667 3.2661 37 1 0.2724 8.4543 5.3999 38 1 -1.0950 8.8855 4.2830 39 1 2.8189 10.2065 3.6167 40 1 2.7058 12.2404 1.6470 41 1 -0.0889 8.8489 1.7457 42 1 1.6692 8.4051 1.8797 43 1 0.8811 7.1804 0.9470 44 1 1.5373 5.8565 -1.0184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189546970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:43 Heat of formation + Delta-G solvation = -69.510956 kcal Electronic energy + Delta-G solvation = -26846.939188 eV Core-core repulsion = 22958.434763 eV Total energy + Delta-G solvation = -3888.504425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.06192 -41.11817 -39.51968 -38.85808 -35.90478 -35.21738 -34.13872 -33.81925 -31.67523 -30.74574 -30.35283 -27.48860 -27.22090 -25.61517 -24.71596 -24.23669 -22.51203 -21.54868 -20.61620 -19.55600 -19.03714 -18.30213 -17.64724 -17.09409 -16.86214 -16.79150 -16.54236 -16.34454 -15.92358 -15.56039 -15.18683 -14.99654 -14.94355 -14.70170 -14.47741 -14.17019 -14.09634 -13.80994 -13.55869 -13.40567 -13.13104 -12.90012 -12.78424 -12.72265 -12.67795 -12.24319 -12.20719 -12.04227 -11.79954 -11.63567 -11.55494 -11.12006 -11.08419 -10.78468 -10.63323 -10.22298 -9.66269 -9.61562 -8.24826 -6.41339 -0.45901 0.04009 1.50345 1.52886 1.58685 1.62335 1.72562 2.04256 2.42702 2.70468 2.97153 3.13706 3.27884 3.69935 3.75226 3.82375 3.91061 3.98221 3.99052 4.12207 4.18841 4.38769 4.43328 4.52457 4.56118 4.60385 4.66495 4.67705 4.74290 4.78061 4.83726 4.90364 5.00186 5.01751 5.04517 5.11840 5.20423 5.22686 5.34868 5.37039 5.74444 5.93399 6.19236 6.63925 6.65209 6.66477 6.92837 7.31648 7.45059 8.81078 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.002752 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.749480 B =10172.201378 C =10671.756977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C 0.077 3.923 4 H 0.086 0.914 5 C -0.165 4.165 6 O -0.308 6.308 7 C 0.319 3.681 8 C -0.154 4.154 9 C -0.055 4.055 10 C 0.563 3.437 11 O -0.586 6.586 12 N -0.622 5.622 13 C 0.112 3.888 14 C 0.220 3.780 15 O -0.587 6.587 16 C -0.555 4.555 17 H 0.073 0.927 18 C 0.037 3.963 19 N -0.913 5.913 20 Si 0.966 3.034 21 H -0.284 1.284 22 H -0.266 1.266 23 H -0.278 1.278 24 C 0.087 3.913 25 C -0.188 4.188 26 C 0.148 3.852 27 N -0.525 5.525 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.140 0.860 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.388 0.612 40 H 0.276 0.724 41 H 0.105 0.895 42 H 0.079 0.921 43 H 0.161 0.839 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -15.161 -10.853 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.021 3.979 4 H 0.104 0.896 5 C -0.223 4.223 6 O -0.216 6.216 7 C 0.140 3.860 8 C -0.176 4.176 9 C -0.065 4.065 10 C 0.354 3.646 11 O -0.469 6.469 12 N -0.354 5.354 13 C -0.010 4.010 14 C 0.179 3.821 15 O -0.399 6.399 16 C -0.593 4.593 17 H 0.091 0.909 18 C -0.165 4.165 19 N -0.553 5.553 20 Si 0.791 3.209 21 H -0.209 1.209 22 H -0.191 1.191 23 H -0.204 1.204 24 C -0.035 4.035 25 C -0.208 4.208 26 C -0.008 4.008 27 N -0.250 5.250 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.079 0.921 38 H 0.129 0.871 39 H 0.243 0.757 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.178 0.822 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.522 -16.674 -10.484 19.703 hybrid contribution -0.145 1.827 0.460 1.889 sum -0.667 -14.847 -10.024 17.927 Atomic orbital electron populations 1.21763 0.95567 1.02455 1.01368 1.21726 0.96454 0.92915 1.04303 1.22722 0.96026 0.93951 0.85153 0.89566 1.22202 0.94153 1.02217 1.03702 1.86299 1.82376 1.15257 1.37643 1.19544 0.92010 0.85282 0.89136 1.21036 1.04430 0.93036 0.99062 1.20031 0.99092 0.93336 0.94055 1.18213 0.77818 0.80881 0.87699 1.90688 1.53620 1.69378 1.33189 1.50112 1.61383 1.03033 1.20865 1.23582 1.00020 0.82853 0.94524 1.20119 0.81297 0.92084 0.88641 1.86066 1.23090 1.72240 1.58489 1.21651 1.04122 0.98099 1.35429 0.90851 1.25688 0.95031 1.02016 0.93731 1.69448 1.12385 1.36882 1.36607 0.85483 0.78429 0.78895 0.78069 1.20943 1.19128 1.20369 1.24411 1.00533 0.83863 0.94663 1.22896 1.02202 1.03433 0.92261 1.23000 0.91067 0.87100 0.99584 1.67245 1.19672 1.12244 1.25832 0.94252 0.92677 0.90938 0.87456 0.90943 0.88682 0.93588 0.91959 0.84230 0.92079 0.87097 0.75745 0.91422 0.87673 0.90261 0.82209 0.77774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.81 71.98 0.71 -1.73 16 2 C -0.12 -1.71 5.64 30.59 0.17 -1.53 16 3 C 0.08 1.51 2.49 30.59 0.08 1.59 16 4 H 0.09 1.76 6.98 -2.39 -0.02 1.75 16 5 C -0.17 -2.85 9.53 71.98 0.69 -2.16 16 6 O -0.31 -8.20 9.30 -90.04 -0.84 -9.03 16 7 C 0.32 9.35 7.45 84.80 0.63 9.98 16 8 C -0.15 -5.12 9.61 22.75 0.22 -4.91 16 9 C -0.05 -1.92 5.91 -19.90 -0.12 -2.03 16 10 C 0.56 23.64 8.01 86.88 0.70 24.34 16 11 O -0.59 -28.03 17.20 -3.77 -0.06 -28.10 16 12 N -0.62 -25.58 3.60 -842.74 -3.04 -28.61 16 13 C 0.11 4.71 8.23 86.48 0.71 5.42 16 14 C 0.22 10.01 1.40 -10.88 -0.02 9.99 16 15 O -0.59 -29.56 13.48 -148.98 -2.01 -31.57 16 16 C -0.56 -26.13 8.61 25.60 0.22 -25.91 16 17 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 18 C 0.04 1.70 5.39 84.65 0.46 2.16 16 19 N -0.91 -43.51 11.20 21.45 0.24 -43.27 16 20 Si 0.97 37.54 29.54 68.60 2.03 39.57 16 21 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 24 C 0.09 3.40 5.66 86.44 0.49 3.89 16 25 C -0.19 -5.40 9.16 22.63 0.21 -5.20 16 26 C 0.15 3.51 11.17 84.62 0.94 4.46 16 27 N -0.53 -13.82 8.61 -309.14 -2.66 -16.48 16 28 H 0.04 0.79 7.82 -2.38 -0.02 0.77 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.14 4.82 7.75 -2.91 -0.02 4.80 16 37 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.11 4.14 8.09 -2.39 -0.02 4.12 16 39 H 0.39 19.66 6.60 -74.06 -0.49 19.17 16 40 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 41 H 0.11 3.74 8.02 -2.39 -0.02 3.72 16 42 H 0.08 3.06 6.90 -2.39 -0.02 3.05 16 43 H 0.16 4.47 4.26 -2.91 -0.01 4.46 16 44 H 0.21 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -59.60 368.07 0.28 -59.32 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: 0.53 Total: 39.81 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 6.08 Total: 18.36 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -5.46 Total: -88.36 kcal Atomic # 8 Polarization: -65.79 SS G_CDS: -2.91 Total: -68.70 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -59.60 0.28 -59.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189546970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.186 kcal (2) G-P(sol) polarization free energy of solvation -59.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds