Wall clock time and date at job start Tue Mar 31 2020 12:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47121 * 2 1 4 4 H 1.09003 * 109.47015 * 303.79856 * 3 2 1 5 5 C 1.50695 * 109.47055 * 183.79707 * 3 2 1 6 6 H 1.08007 * 120.00160 * 245.01081 * 5 3 2 7 7 C 1.37880 * 120.00182 * 65.00667 * 5 3 2 8 8 N 1.31516 * 120.00021 * 200.77849 * 7 5 3 9 9 Si 1.86803 * 119.99919 * 20.78507 * 7 5 3 10 10 H 1.48502 * 109.46630 * 270.00050 * 9 7 5 11 11 H 1.48497 * 109.47071 * 29.99571 * 9 7 5 12 12 H 1.48495 * 109.47080 * 149.99999 * 9 7 5 13 13 N 1.46498 * 109.46889 * 63.79936 * 3 2 1 14 14 C 1.34776 * 119.99850 * 274.99483 * 13 3 2 15 15 O 1.21561 * 119.99882 * 0.02562 * 14 13 3 16 16 C 1.47845 * 120.00153 * 180.02562 * 14 13 3 17 17 C 1.39596 * 120.14540 * 0.02562 * 16 14 13 18 18 C 1.37932 * 119.85624 * 179.97438 * 17 16 14 19 19 C 1.38385 * 120.14489 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.85120 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47123 * 315.82000 * 20 19 18 22 22 C 1.52998 * 109.47420 * 75.83005 * 20 19 18 23 23 C 1.38336 * 120.29229 * 359.97438 * 19 18 17 24 24 N 1.48008 * 119.92921 * 180.02562 * 23 19 18 25 25 O 1.21803 * 120.00337 * 219.12975 * 24 23 19 26 26 O 1.21810 * 120.00033 * 39.12980 * 24 23 19 27 27 C 1.37980 * 120.14209 * 359.76652 * 23 19 18 28 28 H 1.09005 * 109.47001 * 59.99713 * 1 2 3 29 29 H 1.09002 * 109.47481 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47533 * 299.99921 * 1 2 3 31 31 H 1.08998 * 109.46861 * 239.99748 * 2 1 3 32 32 H 1.08995 * 109.46994 * 120.00165 * 2 1 3 33 33 H 0.96996 * 120.00051 * 354.35349 * 8 7 5 34 34 H 0.97001 * 120.00340 * 94.99968 * 13 3 2 35 35 H 1.08006 * 120.06907 * 0.02562 * 17 16 14 36 36 H 1.08004 * 119.93014 * 179.97438 * 18 17 16 37 37 H 1.09009 * 109.46474 * 195.82284 * 20 19 18 38 38 H 1.09005 * 109.46835 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47402 * 300.00406 * 21 20 19 40 40 H 1.08996 * 109.46972 * 60.00875 * 21 20 19 41 41 H 1.08996 * 109.47522 * 59.98989 * 22 20 19 42 42 H 1.08993 * 109.47104 * 180.02562 * 22 20 19 43 43 H 1.09007 * 109.46271 * 299.99429 * 22 20 19 44 44 H 1.08007 * 120.07218 * 180.25528 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6221 1.9756 -0.8540 5 6 3.5440 1.4435 -0.0941 6 1 4.1362 1.8202 0.7269 7 6 4.1642 0.9635 -1.2281 8 7 5.4210 0.5796 -1.1778 9 14 3.2192 0.8587 -2.8361 10 1 2.5590 -0.4677 -2.9366 11 1 2.1898 1.9282 -2.8759 12 1 4.1575 1.0320 -3.9739 13 7 1.6278 2.1061 1.2393 14 6 0.4085 2.6738 1.3264 15 8 -0.3493 2.6347 0.3767 16 6 -0.0073 3.3440 2.5768 17 6 0.8607 3.3912 3.6691 18 6 0.4668 4.0185 4.8326 19 6 -0.7856 4.6008 4.9185 20 6 -1.2089 5.2850 6.1928 21 6 -0.8193 4.4173 7.3912 22 6 -0.5123 6.6431 6.2983 23 6 -1.6502 4.5586 3.8395 24 7 -2.9877 5.1846 3.9400 25 8 -3.9543 4.6402 3.4371 26 8 -3.1217 6.2442 4.5256 27 6 -1.2665 3.9389 2.6679 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9358 0.7098 -0.3661 34 1 2.2324 2.1371 1.9972 35 1 1.8389 2.9381 3.6029 36 1 1.1373 4.0553 5.6786 37 1 -2.2893 5.4304 6.1854 38 1 -1.1259 4.9120 8.3129 39 1 -1.3156 3.4498 7.3160 40 1 0.2609 4.2720 7.3986 41 1 -0.7899 7.2611 5.4444 42 1 -0.8182 7.1377 7.2201 43 1 0.5680 6.4976 6.3056 44 1 -1.9409 3.9102 1.8248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190752545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:33 Heat of formation + Delta-G solvation = -28.666204 kcal Electronic energy + Delta-G solvation = -27200.699541 eV Core-core repulsion = 23313.966277 eV Total energy + Delta-G solvation = -3886.733264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.47256 -40.44373 -38.98182 -36.83519 -35.82760 -35.34283 -32.95261 -32.25848 -31.53246 -30.46232 -27.59404 -27.49149 -26.59492 -24.77558 -22.91479 -22.48785 -21.44545 -20.72169 -19.89857 -19.21139 -18.83546 -17.87116 -17.77893 -16.84932 -16.39762 -15.71970 -15.36382 -15.04541 -14.80195 -14.34815 -14.21089 -13.95933 -13.54062 -13.35212 -13.08484 -12.72159 -12.62761 -12.53548 -12.40319 -12.29378 -11.87825 -11.84826 -11.63515 -11.56671 -11.50088 -11.27503 -10.96375 -10.84963 -10.77858 -10.55295 -10.00960 -9.91016 -9.88396 -9.60159 -9.39685 -9.22541 -8.38754 -8.33514 -6.71395 -4.34006 -0.22923 0.38379 0.93825 1.19107 2.57221 3.29753 3.38303 3.48139 3.53028 3.56604 3.87734 4.00237 4.31368 4.42063 4.53397 4.59644 4.63972 4.70735 4.76341 5.01770 5.02876 5.20831 5.26585 5.30021 5.41126 5.51074 5.53250 5.65839 5.70411 5.83365 5.86252 5.91053 5.93989 5.97998 6.14222 6.25758 6.56140 6.66969 6.77663 6.89684 7.16033 7.22828 7.46542 7.48108 8.10138 8.20937 8.50512 8.71941 9.34009 10.69666 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.003199 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.139767 B = 8750.416244 C = 9486.141476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.244 3.756 4 H 0.049 0.951 5 C -0.624 4.624 6 H 0.062 0.938 7 C 0.043 3.957 8 N -0.891 5.891 9 Si 1.041 2.959 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.283 1.283 13 N -0.689 5.689 14 C 0.543 3.457 15 O -0.536 6.536 16 C -0.119 4.119 17 C -0.040 4.040 18 C -0.119 4.119 19 C -0.003 4.003 20 C -0.076 4.076 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.045 4.045 24 N 0.027 4.973 25 O -0.152 6.152 26 O -0.150 6.150 27 C -0.006 4.006 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.270 0.730 34 H 0.392 0.608 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 7.534 16.380 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.141 3.859 4 H 0.067 0.933 5 C -0.662 4.662 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.524 5.524 9 Si 0.868 3.132 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.209 1.209 13 N -0.336 5.336 14 C 0.328 3.672 15 O -0.415 6.415 16 C -0.123 4.123 17 C -0.059 4.059 18 C -0.138 4.138 19 C -0.004 4.004 20 C -0.095 4.095 21 C -0.205 4.205 22 C -0.194 4.194 23 C -0.127 4.127 24 N 0.549 4.451 25 O -0.370 6.370 26 O -0.367 6.367 27 C -0.026 4.026 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.509 6.660 14.041 18.219 hybrid contribution -0.070 0.603 1.998 2.088 sum -9.579 7.263 16.040 20.044 Atomic orbital electron populations 1.21915 0.97255 0.99203 1.01974 1.22229 0.93779 0.99500 1.01693 1.19273 0.95724 0.88511 0.82374 0.93309 1.22007 0.89352 1.49523 1.05285 0.91992 1.25650 0.97114 0.91807 1.01863 1.70864 1.10328 1.38502 1.32678 0.83996 0.75667 0.77672 0.75850 1.20444 1.20019 1.20903 1.46231 1.14211 1.54729 1.18458 1.17906 0.83216 0.79700 0.86402 1.90787 1.52625 1.59983 1.38101 1.20244 0.94156 1.01591 0.96299 1.21843 0.99368 0.93351 0.91348 1.21024 0.94901 0.98812 0.99022 1.19905 0.92361 0.94048 0.94133 1.20518 1.02518 0.95879 0.90562 1.21935 1.02063 0.99529 0.96986 1.21766 0.99995 0.94641 1.03021 1.20728 0.85149 1.08177 0.98652 1.43543 1.02856 1.00120 0.98605 1.94587 1.30209 1.64825 1.47391 1.94494 1.91987 1.09157 1.41066 1.20981 0.95973 0.89796 0.95812 0.92731 0.94764 0.93515 0.91787 0.92811 0.91938 0.77388 0.83389 0.83060 0.88908 0.91396 0.92392 0.91795 0.91627 0.91427 0.92297 0.82246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.49 37.16 0.32 -2.49 16 2 C -0.13 -2.81 5.32 -26.73 -0.14 -2.95 16 3 C 0.24 5.47 1.84 -69.09 -0.13 5.34 16 4 H 0.05 1.21 5.90 -51.93 -0.31 0.90 16 5 C -0.62 -15.91 8.98 -34.44 -0.31 -16.21 16 6 H 0.06 1.63 7.96 -52.48 -0.42 1.22 16 7 C 0.04 1.17 5.26 -17.82 -0.09 1.07 16 8 N -0.89 -25.47 13.69 55.43 0.76 -24.71 16 9 Si 1.04 24.34 26.08 -169.99 -4.43 19.91 16 10 H -0.28 -6.19 6.80 56.52 0.38 -5.81 16 11 H -0.27 -6.26 6.61 56.52 0.37 -5.89 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.69 -12.65 4.96 -55.88 -0.28 -12.92 16 14 C 0.54 9.59 6.29 -12.33 -0.08 9.52 16 15 O -0.54 -11.15 13.48 5.31 0.07 -11.08 16 16 C -0.12 -1.63 5.87 -104.97 -0.62 -2.24 16 17 C -0.04 -0.42 9.54 -39.19 -0.37 -0.79 16 18 C -0.12 -1.03 9.07 -39.64 -0.36 -1.39 16 19 C 0.00 -0.03 4.81 -104.53 -0.50 -0.53 16 20 C -0.08 -0.64 2.39 -91.77 -0.22 -0.86 16 21 C -0.15 -0.95 8.80 37.16 0.33 -0.62 16 22 C -0.14 -1.00 9.10 37.16 0.34 -0.67 16 23 C -0.04 -0.56 6.45 -80.01 -0.52 -1.08 16 24 N 0.03 0.37 4.09 33.93 0.14 0.51 16 25 O -0.15 -2.28 18.98 -29.46 -0.56 -2.84 16 26 O -0.15 -2.01 16.34 -29.46 -0.48 -2.49 16 27 C -0.01 -0.08 9.23 -39.18 -0.36 -0.44 16 28 H 0.05 1.10 7.77 -51.93 -0.40 0.69 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.88 5.67 -51.93 -0.29 0.59 16 31 H 0.06 1.42 5.57 -51.93 -0.29 1.13 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.27 7.61 8.73 -40.82 -0.36 7.25 16 34 H 0.39 6.14 6.56 -40.82 -0.27 5.87 16 35 H 0.15 1.26 6.41 -52.48 -0.34 0.92 16 36 H 0.15 0.86 6.68 -52.48 -0.35 0.51 16 37 H 0.09 0.92 5.64 -51.92 -0.29 0.62 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.33 6.68 -51.93 -0.35 -0.02 16 41 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.37 8.12 -51.92 -0.42 -0.05 16 44 H 0.16 2.31 7.63 -52.48 -0.40 1.91 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -30.08 357.70 -7.97 -38.05 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.86 Total: 4.54 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.72 Total: -14.35 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.62 Total: -37.13 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.97 Total: -16.41 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.43 Total: 19.91 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.08 -7.97 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190752545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.383 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds