Wall clock time and date at job start Tue Mar 31 2020 12:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47121 * 2 1 4 4 H 1.09003 * 109.47015 * 303.79856 * 3 2 1 5 5 C 1.50695 * 109.47055 * 183.79707 * 3 2 1 6 6 H 1.08007 * 120.00160 * 245.01081 * 5 3 2 7 7 C 1.37880 * 120.00182 * 65.00667 * 5 3 2 8 8 N 1.31516 * 120.00021 * 200.77849 * 7 5 3 9 9 Si 1.86803 * 119.99919 * 20.78507 * 7 5 3 10 10 H 1.48502 * 109.46630 * 270.00050 * 9 7 5 11 11 H 1.48497 * 109.47071 * 29.99571 * 9 7 5 12 12 H 1.48495 * 109.47080 * 149.99999 * 9 7 5 13 13 N 1.46498 * 109.46889 * 63.79936 * 3 2 1 14 14 C 1.34776 * 119.99850 * 274.99483 * 13 3 2 15 15 O 1.21561 * 119.99882 * 0.02562 * 14 13 3 16 16 C 1.47845 * 120.00153 * 180.02562 * 14 13 3 17 17 C 1.39596 * 120.14540 * 0.02562 * 16 14 13 18 18 C 1.37932 * 119.85624 * 179.97438 * 17 16 14 19 19 C 1.38385 * 120.14489 * 359.97438 * 18 17 16 20 20 C 1.50700 * 119.85120 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47123 * 315.82000 * 20 19 18 22 22 C 1.52998 * 109.47420 * 75.83005 * 20 19 18 23 23 C 1.38336 * 120.29229 * 359.97438 * 19 18 17 24 24 N 1.48008 * 119.92921 * 180.02562 * 23 19 18 25 25 O 1.21803 * 120.00337 * 219.12975 * 24 23 19 26 26 O 1.21810 * 120.00033 * 39.12980 * 24 23 19 27 27 C 1.37980 * 120.14209 * 359.76652 * 23 19 18 28 28 H 1.09005 * 109.47001 * 59.99713 * 1 2 3 29 29 H 1.09002 * 109.47481 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47533 * 299.99921 * 1 2 3 31 31 H 1.08998 * 109.46861 * 239.99748 * 2 1 3 32 32 H 1.08995 * 109.46994 * 120.00165 * 2 1 3 33 33 H 0.96996 * 120.00051 * 354.35349 * 8 7 5 34 34 H 0.97001 * 120.00340 * 94.99968 * 13 3 2 35 35 H 1.08006 * 120.06907 * 0.02562 * 17 16 14 36 36 H 1.08004 * 119.93014 * 179.97438 * 18 17 16 37 37 H 1.09009 * 109.46474 * 195.82284 * 20 19 18 38 38 H 1.09005 * 109.46835 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47402 * 300.00406 * 21 20 19 40 40 H 1.08996 * 109.46972 * 60.00875 * 21 20 19 41 41 H 1.08996 * 109.47522 * 59.98989 * 22 20 19 42 42 H 1.08993 * 109.47104 * 180.02562 * 22 20 19 43 43 H 1.09007 * 109.46271 * 299.99429 * 22 20 19 44 44 H 1.08007 * 120.07218 * 180.25528 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6221 1.9756 -0.8540 5 6 3.5440 1.4435 -0.0941 6 1 4.1362 1.8202 0.7269 7 6 4.1642 0.9635 -1.2281 8 7 5.4210 0.5796 -1.1778 9 14 3.2192 0.8587 -2.8361 10 1 2.5590 -0.4677 -2.9366 11 1 2.1898 1.9282 -2.8759 12 1 4.1575 1.0320 -3.9739 13 7 1.6278 2.1061 1.2393 14 6 0.4085 2.6738 1.3264 15 8 -0.3493 2.6347 0.3767 16 6 -0.0073 3.3440 2.5768 17 6 0.8607 3.3912 3.6691 18 6 0.4668 4.0185 4.8326 19 6 -0.7856 4.6008 4.9185 20 6 -1.2089 5.2850 6.1928 21 6 -0.8193 4.4173 7.3912 22 6 -0.5123 6.6431 6.2983 23 6 -1.6502 4.5586 3.8395 24 7 -2.9877 5.1846 3.9400 25 8 -3.9543 4.6402 3.4371 26 8 -3.1217 6.2442 4.5256 27 6 -1.2665 3.9389 2.6679 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.9358 0.7098 -0.3661 34 1 2.2324 2.1371 1.9972 35 1 1.8389 2.9381 3.6029 36 1 1.1373 4.0553 5.6786 37 1 -2.2893 5.4304 6.1854 38 1 -1.1259 4.9120 8.3129 39 1 -1.3156 3.4498 7.3160 40 1 0.2609 4.2720 7.3986 41 1 -0.7899 7.2611 5.4444 42 1 -0.8182 7.1377 7.2201 43 1 0.5680 6.4976 6.3056 44 1 -1.9409 3.9102 1.8248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190752545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:32 Heat of formation + Delta-G solvation = -45.799500 kcal Electronic energy + Delta-G solvation = -27201.442497 eV Core-core repulsion = 23313.966277 eV Total energy + Delta-G solvation = -3887.476219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.51960 -41.59995 -40.19600 -37.90474 -37.22048 -36.45056 -34.61813 -33.71949 -32.82068 -31.45694 -29.24290 -28.08049 -27.63547 -25.86350 -24.26455 -23.87239 -22.69878 -21.62127 -21.45223 -20.59235 -19.92892 -19.46250 -18.90541 -18.06402 -17.58659 -16.96685 -16.57506 -16.30634 -15.73454 -15.60381 -15.23792 -15.04896 -14.82842 -14.54554 -14.45703 -14.16857 -14.10276 -13.74552 -13.51134 -13.29840 -12.97612 -12.86585 -12.73153 -12.60132 -12.55076 -12.35810 -12.31812 -12.21402 -12.15126 -11.79278 -11.64016 -11.55539 -11.21955 -11.04236 -10.81191 -10.44451 -10.35114 -9.92794 -8.82108 -6.44561 -1.22927 -0.61416 -0.04593 0.18452 1.41585 1.49647 1.50758 1.66970 2.14997 2.36315 2.37567 2.97130 3.03149 3.19204 3.52892 3.58660 3.62152 3.83183 3.96182 4.10967 4.24726 4.27206 4.35514 4.40195 4.49781 4.53170 4.72486 4.74612 4.78260 4.81959 4.91038 4.92174 4.98069 5.06070 5.13409 5.14363 5.23758 5.25968 5.33299 5.37066 5.50448 5.53465 5.63801 6.00382 6.35578 6.51872 6.66426 7.18345 7.30634 8.58395 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.003199 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.139767 B = 8750.416244 C = 9486.141476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.249 3.751 4 H 0.026 0.974 5 C -0.616 4.616 6 H 0.048 0.952 7 C 0.002 3.998 8 N -0.922 5.922 9 Si 1.068 2.932 10 H -0.260 1.260 11 H -0.271 1.271 12 H -0.282 1.282 13 N -0.688 5.688 14 C 0.545 3.455 15 O -0.573 6.573 16 C -0.135 4.135 17 C -0.025 4.025 18 C -0.101 4.101 19 C 0.008 3.992 20 C -0.077 4.077 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.058 4.058 24 N 0.028 4.972 25 O -0.200 6.200 26 O -0.127 6.127 27 C -0.015 4.015 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.262 0.738 34 H 0.406 0.594 35 H 0.172 0.828 36 H 0.197 0.803 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 7.888 19.103 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.144 3.856 4 H 0.043 0.957 5 C -0.654 4.654 6 H 0.066 0.934 7 C -0.200 4.200 8 N -0.557 5.557 9 Si 0.891 3.109 10 H -0.185 1.185 11 H -0.196 1.196 12 H -0.208 1.208 13 N -0.336 5.336 14 C 0.332 3.668 15 O -0.455 6.455 16 C -0.139 4.139 17 C -0.044 4.044 18 C -0.119 4.119 19 C 0.007 3.993 20 C -0.096 4.096 21 C -0.203 4.203 22 C -0.193 4.193 23 C -0.140 4.140 24 N 0.547 4.453 25 O -0.406 6.406 26 O -0.353 6.353 27 C -0.035 4.035 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.243 0.757 35 H 0.189 0.811 36 H 0.214 0.786 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.155 6.949 16.751 20.315 hybrid contribution -0.171 0.646 1.326 1.485 sum -9.326 7.595 18.077 21.713 Atomic orbital electron populations 1.21797 0.95704 1.00531 1.01321 1.22121 0.95068 0.98206 1.01459 1.18937 0.93590 0.89556 0.83494 0.95670 1.22195 0.91026 1.47774 1.04366 0.93352 1.26593 0.97188 0.91774 1.04450 1.70953 1.11315 1.40980 1.32459 0.83630 0.75064 0.78737 0.73452 1.18498 1.19638 1.20781 1.45959 1.15037 1.54947 1.17702 1.18354 0.82258 0.78835 0.87305 1.90766 1.53544 1.61229 1.39924 1.19816 0.95030 1.03266 0.95756 1.22106 0.99403 0.92379 0.90493 1.21471 0.94423 0.96549 0.99428 1.20346 0.92240 0.92887 0.93875 1.20602 1.01621 0.96900 0.90446 1.21957 1.03378 0.98733 0.96228 1.21791 1.00937 0.93526 1.03077 1.20801 0.84814 1.09128 0.99301 1.43731 1.03290 1.00011 0.98236 1.94595 1.31139 1.65555 1.49329 1.94459 1.92174 1.08837 1.39833 1.20798 0.96006 0.90762 0.95931 0.94112 0.92349 0.93502 0.92944 0.92092 0.92864 0.75739 0.81094 0.78643 0.90755 0.90162 0.93054 0.89664 0.93307 0.89954 0.90551 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.49 71.98 0.61 -4.49 16 2 C -0.13 -5.36 5.32 30.59 0.16 -5.20 16 3 C 0.25 11.07 1.84 44.24 0.08 11.15 16 4 H 0.03 1.27 5.90 -2.39 -0.01 1.25 16 5 C -0.62 -31.37 8.98 25.60 0.23 -31.14 16 6 H 0.05 2.55 7.96 -2.91 -0.02 2.52 16 7 C 0.00 0.12 5.26 84.66 0.45 0.57 16 8 N -0.92 -53.23 13.69 21.45 0.29 -52.93 16 9 Si 1.07 49.11 26.08 68.60 1.79 50.90 16 10 H -0.26 -11.13 6.80 99.48 0.68 -10.45 16 11 H -0.27 -12.21 6.61 99.48 0.66 -11.55 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 N -0.69 -24.64 4.96 -448.98 -2.23 -26.87 16 14 C 0.55 19.11 6.29 86.79 0.55 19.65 16 15 O -0.57 -24.34 13.48 -3.91 -0.05 -24.40 16 16 C -0.13 -3.54 5.87 -20.09 -0.12 -3.66 16 17 C -0.03 -0.44 9.54 22.52 0.21 -0.22 16 18 C -0.10 -1.29 9.07 22.23 0.20 -1.09 16 19 C 0.01 0.14 4.81 -19.81 -0.10 0.05 16 20 C -0.08 -1.05 2.39 -11.54 -0.03 -1.08 16 21 C -0.15 -1.24 8.80 71.98 0.63 -0.61 16 22 C -0.14 -1.51 9.10 71.98 0.66 -0.85 16 23 C -0.06 -1.42 6.45 36.34 0.23 -1.19 16 24 N 0.03 0.77 4.09 -46.56 -0.19 0.58 16 25 O -0.20 -6.28 18.98 18.88 0.36 -5.92 16 26 O -0.13 -3.34 16.34 18.87 0.31 -3.03 16 27 C -0.01 -0.41 9.23 22.53 0.21 -0.20 16 28 H 0.04 1.62 7.77 -2.38 -0.02 1.60 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.73 5.67 -2.39 -0.01 1.72 16 31 H 0.05 2.28 5.57 -2.39 -0.01 2.26 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.26 14.99 8.73 -92.71 -0.81 14.18 16 34 H 0.41 11.99 6.56 -92.71 -0.61 11.38 16 35 H 0.17 2.18 6.41 -2.91 -0.02 2.16 16 36 H 0.20 0.86 6.68 -2.91 -0.02 0.84 16 37 H 0.07 1.32 5.64 -2.38 -0.01 1.31 16 38 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 0.38 6.68 -2.39 -0.02 0.36 16 41 H 0.05 0.71 8.08 -2.39 -0.02 0.70 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.59 8.12 -2.38 -0.02 0.57 16 44 H 0.14 4.33 7.63 -2.91 -0.02 4.31 16 Total: -1.00 -67.58 357.70 4.58 -63.00 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.32 Total: 16.97 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 3.98 Total: -18.30 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.12 Total: -79.22 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: 0.61 Total: -33.35 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.79 Total: 50.90 kcal Total: -67.58 4.58 -63.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190752545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.198 kcal (2) G-P(sol) polarization free energy of solvation -67.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds