Wall clock time and date at job start Tue Mar 31 2020 12:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45204 * 109.47089 * 2 1 4 4 C 1.34694 * 117.00125 * 179.97438 * 3 2 1 5 5 O 1.21447 * 120.00042 * 359.97438 * 4 3 2 6 6 C 1.47892 * 119.99860 * 179.97438 * 4 3 2 7 7 C 1.39917 * 120.46949 * 353.77003 * 6 4 3 8 8 C 1.38441 * 118.35103 * 180.25412 * 7 6 4 9 9 C 1.39310 * 119.19447 * 359.43282 * 8 7 6 10 10 C 1.48349 * 119.56277 * 180.27642 * 9 8 7 11 11 O 1.21490 * 120.00370 * 0.30277 * 10 9 8 12 12 N 1.34780 * 119.99645 * 180.30190 * 10 9 8 13 13 C 1.46501 * 120.00179 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.46822 * 325.00180 * 13 12 10 15 15 C 1.50698 * 109.47500 * 204.99925 * 13 12 10 16 16 H 1.08002 * 119.99750 * 0.02562 * 15 13 12 17 17 C 1.37876 * 120.00198 * 179.97438 * 15 13 12 18 18 N 1.31517 * 119.99809 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99802 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47327 * 59.99766 * 19 17 15 21 21 H 1.48504 * 109.47060 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47071 * 299.99620 * 19 17 15 23 23 C 1.53004 * 109.47162 * 84.99454 * 13 12 10 24 24 C 1.52993 * 109.47366 * 295.00243 * 23 13 12 25 25 N 1.32710 * 120.86622 * 0.58352 * 9 8 7 26 26 C 1.31411 * 121.81048 * 359.71266 * 25 9 8 27 27 C 1.50700 * 119.64628 * 179.97438 * 26 25 9 28 28 H 1.09000 * 109.47443 * 300.00458 * 1 2 3 29 29 H 1.08999 * 109.46670 * 60.00298 * 1 2 3 30 30 H 1.08993 * 109.46931 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47481 * 240.00059 * 2 1 3 32 32 H 1.08995 * 109.47263 * 119.99272 * 2 1 3 33 33 H 1.07994 * 120.82515 * 359.97438 * 7 6 4 34 34 H 1.08002 * 120.40350 * 179.70000 * 8 7 6 35 35 H 0.96996 * 120.00009 * 359.97438 * 12 10 9 36 36 H 0.96998 * 119.99763 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.47058 * 55.00708 * 23 13 12 38 38 H 1.08999 * 109.46852 * 175.00230 * 23 13 12 39 39 H 1.09000 * 109.47103 * 179.97438 * 24 23 13 40 40 H 1.08998 * 109.47412 * 300.00248 * 24 23 13 41 41 H 1.08999 * 109.47146 * 60.00168 * 24 23 13 42 42 H 1.09001 * 109.47419 * 263.40273 * 27 26 25 43 43 H 1.09005 * 109.46805 * 23.39935 * 27 26 25 44 44 H 1.08997 * 109.46962 * 143.39811 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3493 1.5455 0.0005 5 8 4.0892 0.5824 0.0015 6 6 3.9145 2.9122 0.0000 7 6 3.0779 4.0259 -0.1319 8 6 3.6542 5.2847 -0.1322 9 6 5.0353 5.3998 0.0098 10 6 5.6607 6.7450 0.0168 11 8 4.9688 7.7373 -0.0953 12 7 6.9967 6.8663 0.1475 13 6 7.6144 8.1946 0.1550 14 1 7.0685 8.8530 -0.5209 15 6 9.0472 8.0850 -0.2989 16 1 9.4566 7.1221 -0.5666 17 6 9.8351 9.2140 -0.3734 18 7 9.3360 10.3867 -0.0489 19 14 11.6109 9.0781 -0.9367 20 1 11.6526 8.5201 -2.3122 21 1 12.2367 10.4248 -0.9302 22 1 12.3550 8.1815 -0.0160 23 6 7.5708 8.7694 1.5723 24 6 6.1156 8.9974 1.9857 25 7 5.7993 4.3217 0.1328 26 6 5.2920 3.1094 0.1318 27 6 6.2052 1.9191 0.2741 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.0097 3.9063 -0.2356 34 1 3.0401 6.1669 -0.2369 35 1 7.5491 6.0740 0.2373 36 1 9.8902 11.1811 -0.1016 37 1 8.0393 8.0684 2.2631 38 1 8.1082 9.7174 1.5965 39 1 6.0846 9.4064 2.9956 40 1 5.6471 9.6983 1.2949 41 1 5.5782 8.0494 1.9615 42 1 6.4352 1.5175 -0.7127 43 1 7.1284 2.2262 0.7657 44 1 5.7125 1.1528 0.8725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273807134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:53 Heat of formation + Delta-G solvation = -93.099361 kcal Electronic energy + Delta-G solvation = -26556.791489 eV Core-core repulsion = 22667.264194 eV Total energy + Delta-G solvation = -3889.527295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.22884 -40.10123 -38.61524 -36.97317 -35.16494 -33.41566 -32.90070 -32.31143 -31.85215 -30.78029 -28.06697 -27.23588 -25.66641 -23.73222 -23.07704 -22.29486 -21.73620 -20.58525 -19.42251 -18.28143 -17.97024 -17.18463 -16.95149 -16.41804 -15.92158 -15.31179 -15.10987 -14.58354 -14.50248 -14.49204 -14.02714 -13.88457 -13.46481 -13.30299 -13.18420 -12.85638 -12.68866 -12.52186 -12.36935 -12.17927 -11.97967 -11.94336 -11.51592 -11.25196 -11.00039 -10.91599 -10.82193 -10.54560 -10.36071 -10.20835 -10.12939 -9.98124 -9.64394 -9.20593 -9.18834 -9.06699 -8.50218 -7.87516 -6.12107 -4.21227 0.09242 1.02789 2.11556 2.22949 3.11000 3.27608 3.32381 3.34092 3.67640 3.97375 4.11580 4.25903 4.36628 4.44954 4.51906 4.55766 4.74157 4.85012 4.92084 5.16473 5.19789 5.35262 5.36530 5.44851 5.52246 5.55176 5.62175 5.77399 5.89329 5.97303 6.13570 6.37628 6.40779 6.43778 6.63241 7.02747 7.15507 7.31000 7.37628 7.40428 7.54438 7.64581 7.75047 7.88668 8.15769 8.60819 8.73960 9.02287 9.45426 10.93307 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.002681 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.211008 B =10442.779136 C =11289.420582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.517 3.483 5 O -0.496 6.496 6 C -0.180 4.180 7 C -0.020 4.020 8 C -0.142 4.142 9 C 0.137 3.863 10 C 0.547 3.453 11 O -0.536 6.536 12 N -0.678 5.678 13 C 0.267 3.733 14 H 0.052 0.948 15 C -0.534 4.534 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.128 4.128 24 C -0.138 4.138 25 N -0.463 5.463 26 C 0.195 3.805 27 C -0.112 4.112 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.401 0.599 36 H 0.265 0.735 37 H 0.033 0.967 38 H 0.101 0.899 39 H 0.024 0.976 40 H 0.051 0.949 41 H 0.036 0.964 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 -18.699 1.194 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.271 6.271 4 C 0.362 3.638 5 O -0.385 6.385 6 C -0.184 4.184 7 C -0.045 4.045 8 C -0.162 4.162 9 C -0.002 4.002 10 C 0.329 3.671 11 O -0.414 6.414 12 N -0.324 5.324 13 C 0.166 3.834 14 H 0.070 0.930 15 C -0.572 4.572 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.167 4.167 24 C -0.195 4.195 25 N -0.175 5.175 26 C 0.055 3.945 27 C -0.169 4.169 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.235 0.765 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.120 0.880 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.426 -17.913 1.214 23.031 hybrid contribution 0.259 -0.650 -0.345 0.780 sum -14.167 -18.563 0.869 23.368 Atomic orbital electron populations 1.21820 0.92438 1.03107 1.03696 1.23070 0.95434 0.79699 1.02829 1.86536 1.23648 1.32743 1.84216 1.20883 0.80629 0.89362 0.72917 1.90799 1.59719 1.42466 1.45559 1.20037 0.95052 0.91193 1.12075 1.21892 1.00810 0.90846 0.90992 1.22161 0.95285 0.98808 0.99981 1.22098 0.91433 0.93812 0.92825 1.17814 0.83928 0.86017 0.79307 1.90767 1.62590 1.36821 1.51208 1.46474 1.05424 1.12558 1.67970 1.18925 0.92510 0.77869 0.94106 0.93001 1.21182 0.95483 0.94454 1.46128 0.91947 1.24875 0.98795 0.95053 0.94897 1.69881 1.36580 0.98414 1.47130 0.86492 0.84015 0.77228 0.79288 1.20173 1.21156 1.20105 1.21945 0.94388 1.03274 0.97054 1.21847 0.98771 1.00389 0.98536 1.67702 1.39193 0.97709 1.12941 1.21520 0.90158 0.93404 0.89435 1.21099 0.98417 0.93281 1.04102 0.91347 0.91357 0.90096 0.90997 0.91000 0.82871 0.82426 0.76508 0.92485 0.94838 0.88047 0.95675 0.93014 0.94490 0.89570 0.90294 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.29 37.16 0.38 -0.33 16 2 C 0.06 0.44 6.19 37.16 0.23 0.67 16 3 O -0.35 -3.39 9.56 -40.48 -0.39 -3.78 16 4 C 0.52 5.89 7.83 34.68 0.27 6.16 16 5 O -0.50 -6.24 13.15 -19.22 -0.25 -6.49 16 6 C -0.18 -2.19 5.89 -104.74 -0.62 -2.81 16 7 C -0.02 -0.22 9.73 -38.88 -0.38 -0.60 16 8 C -0.14 -1.91 9.62 -39.11 -0.38 -2.29 16 9 C 0.14 2.28 6.75 -82.93 -0.56 1.72 16 10 C 0.55 11.09 6.38 -12.10 -0.08 11.02 16 11 O -0.54 -12.03 13.45 5.37 0.07 -11.96 16 12 N -0.68 -14.59 5.01 -55.71 -0.28 -14.87 16 13 C 0.27 6.72 2.24 -69.08 -0.15 6.56 16 14 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 15 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 18 N -0.88 -24.51 11.30 55.43 0.63 -23.88 16 19 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 24 C -0.14 -3.05 8.51 37.15 0.32 -2.73 16 25 N -0.46 -7.31 9.43 -5.74 -0.05 -7.36 16 26 C 0.20 2.65 6.82 -82.20 -0.56 2.09 16 27 C -0.11 -1.30 8.87 36.01 0.32 -0.98 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.15 1.24 7.71 -52.49 -0.40 0.83 16 34 H 0.16 2.00 7.63 -52.49 -0.40 1.60 16 35 H 0.40 8.06 7.86 -40.82 -0.32 7.73 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 41 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.11 5.84 -51.93 -0.30 0.81 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -30.04 366.74 -7.69 -37.73 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.18 Total: 6.93 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.74 Total: 2.51 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.29 Total: -46.11 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.57 Total: -22.23 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.04 -7.69 -37.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273807134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.367 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds