Wall clock time and date at job start Tue Mar 31 2020 12:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45204 * 109.47089 * 2 1 4 4 C 1.34694 * 117.00125 * 179.97438 * 3 2 1 5 5 O 1.21447 * 120.00042 * 359.97438 * 4 3 2 6 6 C 1.47892 * 119.99860 * 179.97438 * 4 3 2 7 7 C 1.39917 * 120.46949 * 353.77003 * 6 4 3 8 8 C 1.38441 * 118.35103 * 180.25412 * 7 6 4 9 9 C 1.39310 * 119.19447 * 359.43282 * 8 7 6 10 10 C 1.48349 * 119.56277 * 180.27642 * 9 8 7 11 11 O 1.21490 * 120.00370 * 0.30277 * 10 9 8 12 12 N 1.34780 * 119.99645 * 180.30190 * 10 9 8 13 13 C 1.46501 * 120.00179 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.46822 * 325.00180 * 13 12 10 15 15 C 1.50698 * 109.47500 * 204.99925 * 13 12 10 16 16 H 1.08002 * 119.99750 * 0.02562 * 15 13 12 17 17 C 1.37876 * 120.00198 * 179.97438 * 15 13 12 18 18 N 1.31517 * 119.99809 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99802 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47327 * 59.99766 * 19 17 15 21 21 H 1.48504 * 109.47060 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47071 * 299.99620 * 19 17 15 23 23 C 1.53004 * 109.47162 * 84.99454 * 13 12 10 24 24 C 1.52993 * 109.47366 * 295.00243 * 23 13 12 25 25 N 1.32710 * 120.86622 * 0.58352 * 9 8 7 26 26 C 1.31411 * 121.81048 * 359.71266 * 25 9 8 27 27 C 1.50700 * 119.64628 * 179.97438 * 26 25 9 28 28 H 1.09000 * 109.47443 * 300.00458 * 1 2 3 29 29 H 1.08999 * 109.46670 * 60.00298 * 1 2 3 30 30 H 1.08993 * 109.46931 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47481 * 240.00059 * 2 1 3 32 32 H 1.08995 * 109.47263 * 119.99272 * 2 1 3 33 33 H 1.07994 * 120.82515 * 359.97438 * 7 6 4 34 34 H 1.08002 * 120.40350 * 179.70000 * 8 7 6 35 35 H 0.96996 * 120.00009 * 359.97438 * 12 10 9 36 36 H 0.96998 * 119.99763 * 180.02562 * 18 17 15 37 37 H 1.08998 * 109.47058 * 55.00708 * 23 13 12 38 38 H 1.08999 * 109.46852 * 175.00230 * 23 13 12 39 39 H 1.09000 * 109.47103 * 179.97438 * 24 23 13 40 40 H 1.08998 * 109.47412 * 300.00248 * 24 23 13 41 41 H 1.08999 * 109.47146 * 60.00168 * 24 23 13 42 42 H 1.09001 * 109.47419 * 263.40273 * 27 26 25 43 43 H 1.09005 * 109.46805 * 23.39935 * 27 26 25 44 44 H 1.08997 * 109.46962 * 143.39811 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3493 1.5455 0.0005 5 8 4.0892 0.5824 0.0015 6 6 3.9145 2.9122 0.0000 7 6 3.0779 4.0259 -0.1319 8 6 3.6542 5.2847 -0.1322 9 6 5.0353 5.3998 0.0098 10 6 5.6607 6.7450 0.0168 11 8 4.9688 7.7373 -0.0953 12 7 6.9967 6.8663 0.1475 13 6 7.6144 8.1946 0.1550 14 1 7.0685 8.8530 -0.5209 15 6 9.0472 8.0850 -0.2989 16 1 9.4566 7.1221 -0.5666 17 6 9.8351 9.2140 -0.3734 18 7 9.3360 10.3867 -0.0489 19 14 11.6109 9.0781 -0.9367 20 1 11.6526 8.5201 -2.3122 21 1 12.2367 10.4248 -0.9302 22 1 12.3550 8.1815 -0.0160 23 6 7.5708 8.7694 1.5723 24 6 6.1156 8.9974 1.9857 25 7 5.7993 4.3217 0.1328 26 6 5.2920 3.1094 0.1318 27 6 6.2052 1.9191 0.2741 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.0097 3.9063 -0.2356 34 1 3.0401 6.1669 -0.2369 35 1 7.5491 6.0740 0.2373 36 1 9.8902 11.1811 -0.1016 37 1 8.0393 8.0684 2.2631 38 1 8.1082 9.7174 1.5965 39 1 6.0846 9.4064 2.9956 40 1 5.6471 9.6983 1.2949 41 1 5.5782 8.0494 1.9615 42 1 6.4352 1.5175 -0.7127 43 1 7.1284 2.2262 0.7657 44 1 5.7125 1.1528 0.8725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273807134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:51 Heat of formation + Delta-G solvation = -111.097009 kcal Electronic energy + Delta-G solvation = -26557.571926 eV Core-core repulsion = 22667.264194 eV Total energy + Delta-G solvation = -3890.307732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23948 -41.21499 -40.07699 -37.80651 -37.01913 -34.62755 -34.13687 -33.89925 -32.71488 -32.31999 -29.14939 -29.01483 -26.93902 -24.99760 -24.35169 -23.31611 -22.76171 -22.02000 -21.24342 -19.60593 -19.12720 -18.23922 -17.76958 -17.67833 -17.51317 -16.95657 -16.52634 -16.22666 -15.69583 -15.45849 -15.31013 -14.85339 -14.65055 -14.56805 -14.32937 -14.03250 -13.86307 -13.58964 -13.53221 -13.27916 -13.17561 -13.13766 -12.93007 -12.86335 -12.66254 -12.48858 -12.20260 -12.08127 -11.61516 -11.55133 -11.45104 -11.29916 -11.17111 -11.07577 -10.64933 -10.52879 -10.29198 -9.69361 -8.16591 -6.33517 -0.99993 0.01795 1.09011 1.43743 1.45136 1.46731 1.54509 1.84848 2.21533 2.45710 2.67606 2.94535 3.12679 3.38307 3.50587 3.69073 3.80586 4.03628 4.05824 4.09897 4.39149 4.44597 4.49268 4.56333 4.62172 4.65960 4.71974 4.76025 4.81706 4.96431 4.96885 5.03633 5.05742 5.16434 5.24636 5.33018 5.41594 5.47415 5.50549 5.58566 5.76961 5.86939 6.14438 6.47678 6.56107 6.71516 6.89730 7.27120 7.42982 8.88567 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.002681 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.211008 B =10442.779136 C =11289.420582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.522 3.478 5 O -0.509 6.509 6 C -0.173 4.173 7 C 0.001 3.999 8 C -0.135 4.135 9 C 0.111 3.889 10 C 0.548 3.452 11 O -0.564 6.564 12 N -0.682 5.682 13 C 0.276 3.724 14 H 0.007 0.993 15 C -0.551 4.551 16 H 0.067 0.933 17 C 0.019 3.981 18 N -0.911 5.911 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.266 1.266 23 C -0.121 4.121 24 C -0.124 4.124 25 N -0.480 5.480 26 C 0.183 3.817 27 C -0.107 4.107 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.192 0.808 34 H 0.165 0.835 35 H 0.407 0.593 36 H 0.266 0.734 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.032 0.968 41 H 0.039 0.961 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.276 -21.037 1.308 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.268 6.268 4 C 0.367 3.633 5 O -0.399 6.399 6 C -0.177 4.177 7 C -0.024 4.024 8 C -0.156 4.156 9 C -0.026 4.026 10 C 0.332 3.668 11 O -0.444 6.444 12 N -0.329 5.329 13 C 0.173 3.827 14 H 0.025 0.975 15 C -0.589 4.589 16 H 0.085 0.915 17 C -0.182 4.182 18 N -0.549 5.549 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.191 1.191 23 C -0.160 4.160 24 C -0.182 4.182 25 N -0.193 5.193 26 C 0.043 3.957 27 C -0.163 4.163 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.209 0.791 34 H 0.183 0.817 35 H 0.242 0.758 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.594 -20.281 1.331 25.617 hybrid contribution 0.476 -0.052 -0.396 0.621 sum -15.118 -20.332 0.935 25.354 Atomic orbital electron populations 1.21844 0.90470 1.04443 1.03793 1.23382 0.96928 0.78371 1.03102 1.86528 1.22235 1.34451 1.83627 1.20661 0.81279 0.88641 0.72697 1.90798 1.60266 1.42722 1.46138 1.20205 0.94708 0.92264 1.10489 1.22221 1.02362 0.89164 0.88679 1.22261 0.93904 1.00248 0.99170 1.21540 0.92516 0.92101 0.96488 1.18302 0.83168 0.87534 0.77775 1.90737 1.63010 1.38478 1.52145 1.46255 1.06294 1.11341 1.69019 1.18530 0.91703 0.78969 0.93526 0.97467 1.21495 0.96232 0.94818 1.46372 0.91523 1.25718 1.02937 0.94654 0.94847 1.70020 1.38042 0.99039 1.47825 0.85443 0.78952 0.77317 0.78903 1.19806 1.20876 1.19105 1.21792 0.95488 1.01966 0.96764 1.21684 0.97042 1.00178 0.99249 1.67566 1.39834 0.98249 1.13631 1.21816 0.91367 0.92961 0.89587 1.21103 0.98184 0.92571 1.04483 0.91253 0.91218 0.88161 0.90785 0.90762 0.79130 0.81729 0.75755 0.92451 0.94365 0.90497 0.93322 0.94850 0.94153 0.89021 0.90203 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 71.98 0.74 -0.20 16 2 C 0.06 0.63 6.19 71.98 0.45 1.07 16 3 O -0.35 -5.66 9.56 -56.03 -0.54 -6.20 16 4 C 0.52 10.55 7.83 70.38 0.55 11.10 16 5 O -0.51 -11.71 13.15 20.01 0.26 -11.45 16 6 C -0.17 -3.81 5.89 -19.94 -0.12 -3.93 16 7 C 0.00 0.02 9.73 22.73 0.22 0.24 16 8 C -0.13 -3.45 9.62 22.58 0.22 -3.23 16 9 C 0.11 3.67 6.75 41.96 0.28 3.95 16 10 C 0.55 22.77 6.38 86.94 0.55 23.32 16 11 O -0.56 -26.13 13.45 -3.68 -0.05 -26.18 16 12 N -0.68 -30.28 5.01 -448.48 -2.25 -32.52 16 13 C 0.28 14.40 2.24 44.25 0.10 14.50 16 14 H 0.01 0.45 7.58 -2.38 -0.02 0.43 16 15 C -0.55 -29.84 8.73 25.60 0.22 -29.62 16 16 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 17 C 0.02 1.03 5.29 84.65 0.45 1.48 16 18 N -0.91 -51.94 11.30 21.45 0.24 -51.70 16 19 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 24 C -0.12 -5.57 8.51 71.98 0.61 -4.96 16 25 N -0.48 -14.97 9.43 -172.07 -1.62 -16.59 16 26 C 0.18 4.76 6.82 42.99 0.29 5.05 16 27 C -0.11 -2.34 8.87 71.24 0.63 -1.71 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.19 2.24 7.71 -2.91 -0.02 2.22 16 34 H 0.17 3.95 7.63 -2.91 -0.02 3.93 16 35 H 0.41 16.80 7.86 -92.71 -0.73 16.07 16 36 H 0.27 14.39 8.31 -92.71 -0.77 13.61 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 4.23 5.95 -2.39 -0.01 4.22 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.03 1.58 7.84 -2.39 -0.02 1.56 16 41 H 0.04 1.75 5.65 -2.39 -0.01 1.74 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.10 2.17 5.84 -2.39 -0.01 2.15 16 Total: -1.00 -66.33 366.74 3.75 -62.58 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.30 Total: 26.20 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.37 Total: 11.20 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -3.63 Total: -100.81 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.32 Total: -43.83 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -66.33 3.75 -62.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273807134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.516 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds