Wall clock time and date at job start Tue Mar 31 2020 12:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99916 * 2 1 4 4 N 1.46901 * 109.46841 * 124.13255 * 3 2 1 5 5 C 1.46901 * 111.00100 * 299.16617 * 4 3 2 6 6 C 1.50694 * 109.47086 * 288.13070 * 5 4 3 7 7 H 1.08004 * 120.00470 * 354.70936 * 6 5 4 8 8 C 1.37880 * 119.99841 * 174.71725 * 6 5 4 9 9 N 1.31512 * 120.00263 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99810 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47607 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47198 * 120.00162 * 10 8 6 13 13 H 1.48506 * 109.47406 * 239.99885 * 10 8 6 14 14 C 1.46901 * 110.99817 * 63.11941 * 4 3 2 15 15 C 1.53004 * 109.47063 * 66.04707 * 14 4 3 16 16 C 1.52995 * 109.47303 * 179.97438 * 15 14 4 17 17 O 1.42899 * 109.47210 * 179.97438 * 16 15 14 18 18 C 1.35899 * 116.99964 * 179.97438 * 17 16 15 19 19 C 1.38732 * 120.05544 * 179.97438 * 18 17 16 20 20 C 1.38150 * 119.94159 * 180.02562 * 19 18 17 21 21 C 1.38258 * 120.05732 * 0.03098 * 20 19 18 22 22 N 1.48000 * 119.94499 * 179.97438 * 21 20 19 23 23 O 1.21806 * 119.99786 * 359.97438 * 22 21 20 24 24 O 1.21797 * 120.00357 * 179.72451 * 22 21 20 25 25 C 1.38271 * 120.11326 * 0.24787 * 21 20 19 26 26 C 1.38146 * 120.05390 * 359.44923 * 25 21 20 27 27 H 1.07999 * 119.99768 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00028 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00254 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47105 * 4.13569 * 3 2 1 31 31 H 1.09001 * 109.46769 * 244.13386 * 3 2 1 32 32 H 1.09007 * 109.47037 * 48.12689 * 5 4 3 33 33 H 1.08994 * 109.47029 * 168.12442 * 5 4 3 34 34 H 0.96996 * 119.99929 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47571 * 306.04815 * 14 4 3 36 36 H 1.08994 * 109.46718 * 186.04089 * 14 4 3 37 37 H 1.09004 * 109.46769 * 59.99241 * 15 14 4 38 38 H 1.08998 * 109.46836 * 299.99827 * 15 14 4 39 39 H 1.08999 * 109.46900 * 59.99734 * 16 15 14 40 40 H 1.09003 * 109.47078 * 300.00270 * 16 15 14 41 41 H 1.07994 * 120.03021 * 0.02562 * 19 18 17 42 42 H 1.07997 * 119.96988 * 180.02562 * 20 19 18 43 43 H 1.08003 * 119.97293 * 179.73152 * 25 21 20 44 44 H 1.07994 * 120.02746 * 180.24798 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9814 1.3406 1.1464 5 6 2.2450 1.2407 2.4136 6 6 1.5054 2.5288 2.6677 7 1 1.6424 3.3701 2.0044 8 6 0.6539 2.6335 3.7471 9 7 0.4868 1.6090 4.5546 10 14 -0.2623 4.2305 4.0625 11 1 0.0962 5.2219 3.0166 12 1 -1.7253 3.9779 4.0236 13 1 0.1129 4.7613 5.3977 14 6 3.9953 0.2828 1.0419 15 6 4.9016 0.5619 -0.1588 16 6 5.9580 -0.5395 -0.2673 17 8 6.8042 -0.2791 -1.3890 18 6 7.8031 -1.1690 -1.6280 19 6 8.6618 -0.9780 -2.7008 20 6 9.6761 -1.8844 -2.9420 21 6 9.8356 -2.9813 -2.1156 22 7 10.9227 -3.9510 -2.3765 23 8 11.6758 -3.7826 -3.3190 24 8 11.0673 -4.9150 -1.6463 25 6 8.9775 -3.1769 -1.0491 26 6 7.9655 -2.2702 -0.8000 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3575 2.1323 0.0741 31 1 2.6335 1.3956 -0.9247 32 1 1.5324 0.4179 2.3559 33 1 2.9462 1.0576 3.2278 34 1 -0.1119 1.6828 5.3142 35 1 3.5030 -0.6806 0.9093 36 1 4.5943 0.2625 1.9523 37 1 5.3939 1.5254 -0.0261 38 1 4.3026 0.5822 -1.0691 39 1 5.4660 -1.5030 -0.3996 40 1 6.5570 -0.5594 0.6432 41 1 8.5373 -0.1216 -3.3469 42 1 10.3451 -1.7360 -3.7767 43 1 9.1015 -4.0369 -0.4076 44 1 7.2981 -2.4213 0.0355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292071557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:30 Heat of formation + Delta-G solvation = 6.636451 kcal Electronic energy + Delta-G solvation = -25419.851942 eV Core-core repulsion = 21534.649516 eV Total energy + Delta-G solvation = -3885.202426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.41339 -40.80375 -38.37233 -37.61232 -36.79353 -33.54034 -32.89853 -32.04926 -31.69184 -30.91892 -27.48318 -26.60942 -25.92697 -24.59344 -23.42422 -22.45732 -21.40881 -20.95598 -19.68956 -19.01968 -18.89289 -18.42837 -17.76130 -16.74379 -16.54378 -16.28163 -15.50977 -15.36737 -15.01972 -14.50556 -14.38246 -14.30245 -14.07421 -13.74177 -13.56403 -13.15943 -12.83761 -12.27850 -12.11758 -11.84244 -11.80760 -11.59484 -11.45337 -11.44827 -11.38378 -11.12615 -11.03849 -10.79792 -10.71773 -10.53537 -10.48386 -9.99487 -9.97408 -9.30939 -9.20986 -8.81790 -8.48110 -7.37883 -6.08098 -4.09185 -0.42805 0.43442 1.05058 1.15780 2.49990 2.78556 2.81620 3.25886 3.33992 3.38273 3.88271 3.98623 4.18291 4.35390 4.42100 4.61598 4.66203 4.70452 4.88951 5.04056 5.14383 5.17726 5.27513 5.29580 5.36952 5.42009 5.45415 5.47926 5.64359 5.69803 5.84614 6.01127 6.11336 6.17013 6.26748 6.33701 6.57024 6.69592 7.05557 7.14260 7.23070 7.34197 7.39608 7.74490 7.98609 8.08549 8.45339 8.98934 9.55117 11.02443 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027742 B = 0.001874 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.050935 B =14936.582100 C =15079.362718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.185 4.185 3 C 0.087 3.913 4 N -0.528 5.528 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.056 3.944 15 C -0.115 4.115 16 C 0.054 3.946 17 O -0.297 6.297 18 C 0.194 3.806 19 C -0.155 4.155 20 C -0.014 4.014 21 C -0.093 4.093 22 N 0.037 4.963 23 O -0.169 6.169 24 O -0.169 6.169 25 C -0.009 4.009 26 C -0.212 4.212 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.007 0.993 33 H 0.022 0.978 34 H 0.260 0.740 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 -7.808 -13.687 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.204 4.204 3 C -0.041 4.041 4 N -0.251 5.251 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.021 4.021 17 O -0.208 6.208 18 C 0.145 3.855 19 C -0.174 4.174 20 C -0.033 4.033 21 C -0.177 4.177 22 N 0.554 4.446 23 O -0.383 6.383 24 O -0.384 6.384 25 C -0.029 4.029 26 C -0.231 4.231 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.025 0.975 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.174 0.826 42 H 0.176 0.824 43 H 0.173 0.827 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 13.438 -6.739 -13.475 20.189 hybrid contribution -0.797 -0.542 0.574 1.122 sum 12.641 -7.281 -12.901 19.474 Atomic orbital electron populations 1.23727 0.96071 1.01232 1.00349 1.23532 0.96739 0.99740 1.00416 1.21304 0.94744 0.94477 0.93567 1.62384 1.14781 1.43440 1.04485 1.19786 0.92231 0.97380 0.84063 1.21151 1.24126 0.98336 1.10613 0.91899 1.24975 0.96889 0.96577 0.96145 1.69959 1.37836 1.30105 1.15862 0.86487 0.79405 0.83627 0.78175 1.19658 1.21140 1.21045 1.21912 0.94508 0.94225 0.96683 1.21607 0.95416 0.97945 1.00338 1.23156 0.91648 1.00770 0.86535 1.86176 1.39530 1.46287 1.48855 1.19459 0.86729 0.87383 0.91943 1.20480 0.95589 1.02264 0.99075 1.20829 0.95842 0.89658 0.97017 1.20965 0.96231 0.95966 1.04561 1.43524 1.00904 1.00817 0.99358 1.94531 1.41106 1.81045 1.21667 1.94538 1.77637 1.20808 1.45381 1.20840 0.90292 0.98506 0.93220 1.21382 1.02210 0.95988 1.03545 0.88382 0.89672 0.88724 0.89667 0.91887 0.97529 0.95971 0.93020 0.95274 0.91144 0.89815 0.90683 0.91354 0.91023 0.82623 0.82365 0.82679 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 14.32 29.01 0.42 -2.50 16 2 C -0.18 -3.08 7.45 -36.02 -0.27 -3.35 16 3 C 0.09 1.52 5.46 -4.97 -0.03 1.49 16 4 N -0.53 -10.20 4.66 -237.51 -1.11 -11.31 16 5 C 0.19 4.62 4.59 -4.98 -0.02 4.59 16 6 C -0.50 -13.49 8.51 -34.44 -0.29 -13.79 16 7 H 0.06 1.69 7.67 -52.48 -0.40 1.28 16 8 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 9 N -0.90 -25.83 13.29 55.43 0.74 -25.10 16 10 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.06 0.83 4.79 -3.82 -0.02 0.81 16 15 C -0.12 -1.34 5.51 -26.73 -0.15 -1.49 16 16 C 0.05 0.48 4.74 37.16 0.18 0.66 16 17 O -0.30 -2.80 10.14 -19.42 -0.20 -2.99 16 18 C 0.19 1.59 6.69 -39.21 -0.26 1.32 16 19 C -0.15 -1.09 9.99 -39.43 -0.39 -1.49 16 20 C -0.01 -0.11 9.55 -39.61 -0.38 -0.48 16 21 C -0.09 -0.85 6.85 -79.94 -0.55 -1.40 16 22 N 0.04 0.43 4.45 33.97 0.15 0.58 16 23 O -0.17 -2.04 18.44 -29.46 -0.54 -2.58 16 24 O -0.17 -2.08 18.44 -29.46 -0.54 -2.62 16 25 C -0.01 -0.07 9.55 -39.60 -0.38 -0.45 16 26 C -0.21 -1.55 9.04 -39.43 -0.36 -1.91 16 27 H 0.10 1.68 7.84 -52.49 -0.41 1.26 16 28 H 0.08 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.09 1.46 6.76 -52.49 -0.36 1.10 16 30 H 0.08 1.66 7.02 -51.93 -0.36 1.29 16 31 H 0.06 0.94 6.33 -51.93 -0.33 0.61 16 32 H 0.01 0.18 6.75 -51.93 -0.35 -0.17 16 33 H 0.02 0.58 7.81 -51.93 -0.41 0.17 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.03 0.42 6.29 -51.93 -0.33 0.10 16 36 H 0.07 1.06 7.86 -51.93 -0.41 0.65 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.88 6.49 -51.93 -0.34 0.54 16 39 H 0.07 0.53 7.66 -51.93 -0.40 0.13 16 40 H 0.07 0.56 7.66 -51.93 -0.40 0.17 16 41 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.16 0.91 7.60 -52.49 -0.40 0.51 16 43 H 0.16 1.01 7.61 -52.48 -0.40 0.61 16 44 H 0.15 0.87 6.30 -52.49 -0.33 0.54 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -30.40 373.00 -9.52 -39.92 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.02 Total: -0.97 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -2.60 Total: -16.56 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.22 Total: -35.83 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -1.28 Total: -8.20 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.40 -9.52 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292071557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.557 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds