Wall clock time and date at job start Tue Mar 31 2020 12:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99916 * 2 1 4 4 N 1.46901 * 109.46841 * 124.13255 * 3 2 1 5 5 C 1.46901 * 111.00100 * 299.16617 * 4 3 2 6 6 C 1.50694 * 109.47086 * 288.13070 * 5 4 3 7 7 H 1.08004 * 120.00470 * 354.70936 * 6 5 4 8 8 C 1.37880 * 119.99841 * 174.71725 * 6 5 4 9 9 N 1.31512 * 120.00263 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99810 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47607 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47198 * 120.00162 * 10 8 6 13 13 H 1.48506 * 109.47406 * 239.99885 * 10 8 6 14 14 C 1.46901 * 110.99817 * 63.11941 * 4 3 2 15 15 C 1.53004 * 109.47063 * 66.04707 * 14 4 3 16 16 C 1.52995 * 109.47303 * 179.97438 * 15 14 4 17 17 O 1.42899 * 109.47210 * 179.97438 * 16 15 14 18 18 C 1.35899 * 116.99964 * 179.97438 * 17 16 15 19 19 C 1.38732 * 120.05544 * 179.97438 * 18 17 16 20 20 C 1.38150 * 119.94159 * 180.02562 * 19 18 17 21 21 C 1.38258 * 120.05732 * 0.03098 * 20 19 18 22 22 N 1.48000 * 119.94499 * 179.97438 * 21 20 19 23 23 O 1.21806 * 119.99786 * 359.97438 * 22 21 20 24 24 O 1.21797 * 120.00357 * 179.72451 * 22 21 20 25 25 C 1.38271 * 120.11326 * 0.24787 * 21 20 19 26 26 C 1.38146 * 120.05390 * 359.44923 * 25 21 20 27 27 H 1.07999 * 119.99768 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00028 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00254 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47105 * 4.13569 * 3 2 1 31 31 H 1.09001 * 109.46769 * 244.13386 * 3 2 1 32 32 H 1.09007 * 109.47037 * 48.12689 * 5 4 3 33 33 H 1.08994 * 109.47029 * 168.12442 * 5 4 3 34 34 H 0.96996 * 119.99929 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47571 * 306.04815 * 14 4 3 36 36 H 1.08994 * 109.46718 * 186.04089 * 14 4 3 37 37 H 1.09004 * 109.46769 * 59.99241 * 15 14 4 38 38 H 1.08998 * 109.46836 * 299.99827 * 15 14 4 39 39 H 1.08999 * 109.46900 * 59.99734 * 16 15 14 40 40 H 1.09003 * 109.47078 * 300.00270 * 16 15 14 41 41 H 1.07994 * 120.03021 * 0.02562 * 19 18 17 42 42 H 1.07997 * 119.96988 * 180.02562 * 20 19 18 43 43 H 1.08003 * 119.97293 * 179.73152 * 25 21 20 44 44 H 1.07994 * 120.02746 * 180.24798 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9814 1.3406 1.1464 5 6 2.2450 1.2407 2.4136 6 6 1.5054 2.5288 2.6677 7 1 1.6424 3.3701 2.0044 8 6 0.6539 2.6335 3.7471 9 7 0.4868 1.6090 4.5546 10 14 -0.2623 4.2305 4.0625 11 1 0.0962 5.2219 3.0166 12 1 -1.7253 3.9779 4.0236 13 1 0.1129 4.7613 5.3977 14 6 3.9953 0.2828 1.0419 15 6 4.9016 0.5619 -0.1588 16 6 5.9580 -0.5395 -0.2673 17 8 6.8042 -0.2791 -1.3890 18 6 7.8031 -1.1690 -1.6280 19 6 8.6618 -0.9780 -2.7008 20 6 9.6761 -1.8844 -2.9420 21 6 9.8356 -2.9813 -2.1156 22 7 10.9227 -3.9510 -2.3765 23 8 11.6758 -3.7826 -3.3190 24 8 11.0673 -4.9150 -1.6463 25 6 8.9775 -3.1769 -1.0491 26 6 7.9655 -2.2702 -0.8000 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3575 2.1323 0.0741 31 1 2.6335 1.3956 -0.9247 32 1 1.5324 0.4179 2.3559 33 1 2.9462 1.0576 3.2278 34 1 -0.1119 1.6828 5.3142 35 1 3.5030 -0.6806 0.9093 36 1 4.5943 0.2625 1.9523 37 1 5.3939 1.5254 -0.0261 38 1 4.3026 0.5822 -1.0691 39 1 5.4660 -1.5030 -0.3996 40 1 6.5570 -0.5594 0.6432 41 1 8.5373 -0.1216 -3.3469 42 1 10.3451 -1.7360 -3.7767 43 1 9.1015 -4.0369 -0.4076 44 1 7.2981 -2.4213 0.0355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292071557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:29 Heat of formation + Delta-G solvation = -9.910291 kcal Electronic energy + Delta-G solvation = -25420.569463 eV Core-core repulsion = 21534.649516 eV Total energy + Delta-G solvation = -3885.919947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.21962 -41.45613 -39.39314 -38.69200 -37.65430 -34.96143 -34.51851 -33.03143 -32.46766 -31.88178 -29.15611 -27.66071 -26.96228 -25.89444 -24.31502 -23.32646 -22.62839 -22.24463 -20.40100 -20.20873 -19.72196 -19.27066 -18.58008 -18.33263 -17.53456 -17.28561 -16.82512 -16.35262 -16.12758 -15.95404 -15.53413 -14.93665 -14.90633 -14.82180 -14.62756 -14.28268 -14.05253 -13.72233 -13.33830 -13.12232 -12.84992 -12.70600 -12.57268 -12.49172 -12.39507 -12.30285 -12.29594 -12.26428 -12.13617 -11.98701 -11.95418 -11.52410 -11.22495 -10.58747 -10.52761 -10.16674 -9.84531 -8.94419 -8.17003 -6.25311 -1.20050 -0.11098 0.30151 0.42095 1.39680 1.41658 1.45295 1.53722 1.81230 2.22233 2.41472 3.15943 3.30602 3.38587 3.46255 3.58250 3.84523 3.90316 4.02885 4.09564 4.14555 4.26808 4.27113 4.32638 4.46572 4.55800 4.61705 4.64481 4.70564 4.74721 4.90729 4.98071 5.06590 5.08699 5.13617 5.22727 5.28071 5.34467 5.40945 5.68762 5.73533 5.91590 6.04110 6.13293 6.38914 6.49951 6.67986 6.91599 7.43827 8.92979 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027742 B = 0.001874 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.050935 B =14936.582100 C =15079.362718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.189 4.189 3 C 0.089 3.911 4 N -0.539 5.539 5 C 0.206 3.794 6 C -0.514 4.514 7 H 0.058 0.942 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.055 3.945 15 C -0.103 4.103 16 C 0.057 3.943 17 O -0.306 6.306 18 C 0.187 3.813 19 C -0.150 4.150 20 C -0.011 4.011 21 C -0.109 4.109 22 N 0.039 4.961 23 O -0.184 6.184 24 O -0.195 6.195 25 C -0.011 4.011 26 C -0.208 4.208 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.093 0.907 32 H -0.016 1.016 33 H -0.003 1.003 34 H 0.262 0.738 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.175 0.825 42 H 0.173 0.827 43 H 0.165 0.835 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.951 -7.408 -14.679 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.208 4.208 3 C -0.039 4.039 4 N -0.261 5.261 5 C 0.080 3.920 6 C -0.553 4.553 7 H 0.076 0.924 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.189 1.189 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.073 4.073 15 C -0.141 4.141 16 C -0.018 4.018 17 O -0.217 6.217 18 C 0.138 3.862 19 C -0.169 4.169 20 C -0.030 4.030 21 C -0.193 4.193 22 N 0.551 4.449 23 O -0.397 6.397 24 O -0.405 6.405 25 C -0.030 4.030 26 C -0.227 4.227 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.002 0.998 33 H 0.015 0.985 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.193 0.807 42 H 0.191 0.809 43 H 0.182 0.818 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 13.548 -6.362 -14.485 20.829 hybrid contribution -0.827 -0.634 0.845 1.342 sum 12.721 -6.995 -13.640 19.920 Atomic orbital electron populations 1.23866 0.96358 1.01645 1.00313 1.23612 0.96850 0.99956 1.00391 1.21283 0.94547 0.94114 0.93947 1.62241 1.15132 1.45797 1.02962 1.19387 0.91239 0.95452 0.85880 1.21463 1.24268 0.99155 1.10404 0.92388 1.25790 0.97850 0.99751 0.96014 1.70070 1.38709 1.32069 1.16445 0.85481 0.78113 0.79820 0.78094 1.18895 1.20679 1.20687 1.21958 0.93794 0.93279 0.98250 1.21376 0.95544 0.98629 0.98551 1.23056 0.91365 1.00221 0.87140 1.86132 1.39894 1.46795 1.48923 1.19643 0.86634 0.87456 0.92441 1.20695 0.94815 1.02511 0.98908 1.21028 0.96022 0.88938 0.97023 1.21193 0.96062 0.96157 1.05867 1.43847 1.01202 1.00955 0.98931 1.94509 1.41947 1.81243 1.22023 1.94523 1.78335 1.21860 1.45746 1.21007 0.90061 0.98983 0.92951 1.21553 1.02027 0.95336 1.03767 0.89552 0.87830 0.86955 0.92283 0.88860 0.99841 0.98488 0.92930 0.94417 0.91594 0.90710 0.90409 0.89604 0.89795 0.80721 0.80939 0.81758 0.81085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.97 14.32 67.78 0.97 -5.00 16 2 C -0.19 -6.06 7.45 25.65 0.19 -5.87 16 3 C 0.09 3.02 5.46 85.56 0.47 3.49 16 4 N -0.54 -20.57 4.66 -905.36 -4.22 -24.79 16 5 C 0.21 10.19 4.59 85.55 0.39 10.58 16 6 C -0.51 -27.89 8.51 25.60 0.22 -27.67 16 7 H 0.06 3.13 7.67 -2.91 -0.02 3.11 16 8 C 0.00 0.21 5.46 84.66 0.46 0.67 16 9 N -0.93 -54.30 13.29 21.45 0.28 -54.01 16 10 Si 0.96 43.26 29.54 68.60 2.03 45.28 16 11 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 C 0.06 1.58 4.79 86.30 0.41 1.99 16 15 C -0.10 -2.15 5.51 30.59 0.17 -1.98 16 16 C 0.06 0.84 4.74 71.98 0.34 1.18 16 17 O -0.31 -4.82 10.14 -92.42 -0.94 -5.76 16 18 C 0.19 2.53 6.69 22.51 0.15 2.68 16 19 C -0.15 -1.72 9.99 22.37 0.22 -1.50 16 20 C -0.01 -0.14 9.55 22.25 0.21 0.07 16 21 C -0.11 -1.84 6.85 36.39 0.25 -1.59 16 22 N 0.04 0.88 4.45 -46.44 -0.21 0.67 16 23 O -0.18 -4.40 18.44 18.88 0.35 -4.05 16 24 O -0.19 -4.80 18.44 18.89 0.35 -4.45 16 25 C -0.01 -0.15 9.55 22.26 0.21 0.06 16 26 C -0.21 -2.48 9.04 22.37 0.20 -2.28 16 27 H 0.09 2.97 7.84 -2.91 -0.02 2.95 16 28 H 0.10 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.11 3.20 6.76 -2.91 -0.02 3.18 16 30 H 0.06 2.31 7.02 -2.39 -0.02 2.29 16 31 H 0.09 2.59 6.33 -2.39 -0.02 2.58 16 32 H -0.02 -0.86 6.75 -2.38 -0.02 -0.88 16 33 H 0.00 -0.16 7.81 -2.39 -0.02 -0.18 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.04 1.02 6.29 -2.39 -0.02 1.00 16 36 H 0.07 1.92 7.86 -2.39 -0.02 1.90 16 37 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.08 1.59 6.49 -2.39 -0.02 1.57 16 39 H 0.09 1.00 7.66 -2.39 -0.02 0.98 16 40 H 0.08 1.06 7.66 -2.39 -0.02 1.04 16 41 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.17 1.65 7.60 -2.91 -0.02 1.63 16 43 H 0.16 1.91 7.61 -2.91 -0.02 1.89 16 44 H 0.17 1.38 6.30 -2.91 -0.02 1.36 16 Total: -1.00 -66.09 373.00 3.53 -62.57 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.00 Total: 9.72 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 4.88 Total: -25.18 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -4.14 Total: -78.13 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.24 Total: -14.26 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -66.09 3.53 -62.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292071557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.657 kcal (2) G-P(sol) polarization free energy of solvation -66.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds