Wall clock time and date at job start Tue Mar 31 2020 12:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00163 * 2 1 4 4 N 1.46508 * 109.46875 * 125.00018 * 3 2 1 5 5 C 1.46495 * 119.99865 * 270.38484 * 4 3 2 6 6 C 1.50699 * 109.47117 * 275.80292 * 5 4 3 7 7 H 1.08000 * 119.99887 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00099 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00185 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00259 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47079 * 89.99839 * 10 8 6 12 12 H 1.48495 * 109.47085 * 210.00398 * 10 8 6 13 13 H 1.48505 * 109.46753 * 329.99728 * 10 8 6 14 14 C 1.34772 * 119.99531 * 90.38273 * 4 3 2 15 15 O 1.21277 * 120.00355 * 4.74421 * 14 4 3 16 16 C 1.50701 * 119.99917 * 184.74263 * 14 4 3 17 17 H 1.08998 * 110.27227 * 328.13339 * 16 14 4 18 18 C 1.54599 * 110.39228 * 90.27597 * 16 14 4 19 19 C 1.54941 * 102.91939 * 140.91789 * 18 16 14 20 20 N 1.48535 * 103.22881 * 322.58809 * 19 18 16 21 21 C 1.46896 * 110.99954 * 159.72156 * 20 19 18 22 22 C 1.52996 * 109.47402 * 52.60259 * 21 20 19 23 23 F 1.39897 * 109.47334 * 59.99805 * 22 21 20 24 24 F 1.39902 * 109.47373 * 180.02562 * 22 21 20 25 25 F 1.39906 * 109.46978 * 300.00083 * 22 21 20 26 26 C 1.47899 * 105.81830 * 39.20444 * 20 19 18 27 27 H 1.08005 * 119.99602 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.00681 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99839 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.46885 * 5.00728 * 3 2 1 31 31 H 1.08997 * 109.47449 * 245.00328 * 3 2 1 32 32 H 1.09000 * 109.47474 * 35.80543 * 5 4 3 33 33 H 1.09005 * 109.47211 * 155.80658 * 5 4 3 34 34 H 0.97003 * 120.00407 * 179.97438 * 9 8 6 35 35 H 1.09000 * 110.72245 * 259.27552 * 18 16 14 36 36 H 1.08998 * 110.72263 * 22.56155 * 18 16 14 37 37 H 1.09005 * 110.66530 * 81.02394 * 19 18 16 38 38 H 1.08999 * 110.66898 * 204.14788 * 19 18 16 39 39 H 1.08998 * 109.47274 * 172.60366 * 21 20 19 40 40 H 1.09005 * 109.47143 * 292.60227 * 21 20 19 41 41 H 1.09000 * 109.91676 * 215.31737 * 26 20 19 42 42 H 1.09008 * 109.91527 * 94.02524 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5563 1.8570 2.4272 6 6 2.7018 3.3569 2.4363 7 1 3.0818 3.8679 1.5639 8 6 2.3499 4.0769 3.5582 9 7 1.8877 3.4547 4.6206 10 14 2.5296 5.9363 3.5692 11 1 1.2728 6.5579 3.0802 12 1 2.8048 6.3988 4.9532 13 1 3.6542 6.3301 2.6830 14 6 4.2520 0.8731 0.9803 15 8 4.6410 0.5185 -0.1123 16 6 5.1757 0.8009 2.1689 17 1 4.9490 1.6018 2.8725 18 6 5.0527 -0.5747 2.8638 19 6 6.5172 -0.8986 3.2522 20 7 7.2976 -0.3773 2.1009 21 6 8.7005 -0.1530 2.4742 22 6 9.2706 -1.4256 3.1037 23 9 9.1954 -2.4756 2.1824 24 9 10.6065 -1.2117 3.4598 25 9 8.5309 -1.7529 4.2452 26 6 6.6434 0.8907 1.7115 27 1 -0.5400 0.9354 0.0004 28 1 -0.5401 -0.9352 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9314 32 1 1.5120 1.5923 2.5927 33 1 3.1699 1.4277 3.2192 34 1 1.6404 3.9612 5.4101 35 1 4.4248 -0.5033 3.7519 36 1 4.6625 -1.3222 2.1731 37 1 6.7949 -0.3817 4.1709 38 1 6.6585 -1.9743 3.3573 39 1 9.2768 0.1021 1.5849 40 1 8.7591 0.6652 3.1922 41 1 6.6882 1.0147 0.6295 42 1 7.1353 1.7291 2.2048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293962181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:51 Heat of formation + Delta-G solvation = -157.785376 kcal Electronic energy + Delta-G solvation = -28079.079453 eV Core-core repulsion = 23644.890421 eV Total energy + Delta-G solvation = -4434.189032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.22477 -47.79126 -47.61678 -39.91815 -38.02513 -35.47385 -33.64971 -32.80011 -32.10167 -29.00070 -28.30825 -27.51642 -25.58432 -23.36931 -23.05374 -21.51894 -21.35718 -19.63783 -18.70093 -18.55394 -18.12219 -17.46644 -16.78000 -16.47906 -15.90794 -15.40399 -15.10329 -14.65538 -14.56342 -14.47270 -14.33406 -14.26159 -14.08695 -14.00783 -13.79274 -13.76227 -12.92414 -12.75493 -12.69514 -12.47814 -12.16812 -11.87931 -11.64034 -11.47085 -11.30853 -11.23230 -11.11418 -10.97584 -10.89634 -10.80944 -10.48336 -10.22595 -9.80997 -9.24287 -8.90166 -8.61544 -8.59818 -7.78495 -6.25008 -4.32989 2.55420 2.59208 3.17456 3.24483 3.25914 3.31970 3.49230 3.67356 3.92780 3.97069 4.27731 4.31456 4.66077 4.89123 4.96150 5.07972 5.14661 5.17945 5.32061 5.37612 5.53338 5.58010 5.62610 5.83626 5.96873 6.02492 6.05995 6.18642 6.25724 6.26681 6.34983 6.68213 6.69964 6.76518 6.91989 7.03717 7.14637 7.49980 7.69778 7.98453 8.29756 8.72325 8.96077 9.35596 10.81482 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.003873 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.246994 B = 7226.982580 C = 8645.211193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.143 3.857 4 N -0.590 5.590 5 C 0.236 3.764 6 C -0.541 4.541 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.896 3.104 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.526 3.474 15 O -0.566 6.566 16 C -0.121 4.121 17 H 0.117 0.883 18 C -0.105 4.105 19 C 0.023 3.977 20 N -0.506 5.506 21 C 0.000 4.000 22 C 0.456 3.544 23 F -0.173 7.173 24 F -0.186 7.186 25 F -0.182 7.182 26 C 0.055 3.945 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.266 0.734 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.146 -7.493 -1.651 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.319 5.319 5 C 0.117 3.883 6 C -0.579 4.579 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.723 3.277 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.313 3.687 15 O -0.447 6.447 16 C -0.142 4.142 17 H 0.135 0.865 18 C -0.143 4.143 19 C -0.104 4.104 20 N -0.231 5.231 21 C -0.130 4.130 22 C 0.401 3.599 23 F -0.155 7.155 24 F -0.167 7.167 25 F -0.163 7.163 26 C -0.073 4.073 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.288 -8.012 -2.428 12.505 hybrid contribution 0.052 1.484 1.066 1.828 sum 9.340 -6.528 -1.362 11.477 Atomic orbital electron populations 1.23769 0.95791 1.01545 1.01871 1.23376 0.96079 0.99268 0.98725 1.20403 0.92285 0.94730 0.90613 1.48183 1.10447 1.59643 1.13652 1.19473 0.96516 0.93904 0.78456 1.21506 1.44455 0.91783 1.00189 0.92061 1.24933 0.94673 0.98855 0.95253 1.69918 1.42944 1.36035 1.03925 0.86527 0.78706 0.85056 0.77393 1.20456 1.21046 1.19773 1.20158 0.82467 0.76671 0.89373 1.90594 1.75904 1.50958 1.27249 1.22163 0.93827 1.00695 0.97547 0.86495 1.22399 0.96046 0.95245 1.00618 1.23709 0.93357 1.01304 0.92043 1.64979 0.98814 1.26533 1.32770 1.23499 0.94202 0.92491 1.02846 1.20485 0.75645 0.87089 0.76677 1.93212 1.95922 1.60420 1.65920 1.93182 1.36211 1.94944 1.92390 1.93187 1.76351 1.93866 1.52941 1.22871 0.92273 0.88755 1.03356 0.88436 0.88929 0.87920 0.89846 0.90101 0.94726 0.94008 0.92468 0.89685 0.90527 0.92390 0.89157 0.86128 0.90003 0.87958 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.76 14.32 29.01 0.42 -2.35 16 2 C -0.16 -2.54 9.85 -36.02 -0.35 -2.89 16 3 C 0.14 2.62 5.90 -5.19 -0.03 2.59 16 4 N -0.59 -11.97 2.44 -176.43 -0.43 -12.40 16 5 C 0.24 5.36 4.86 -5.20 -0.03 5.33 16 6 C -0.54 -13.52 9.38 -34.44 -0.32 -13.84 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -23.68 13.29 55.43 0.74 -22.94 16 10 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 14 C 0.53 10.42 6.67 -10.99 -0.07 10.35 16 15 O -0.57 -12.28 15.18 5.56 0.08 -12.19 16 16 C -0.12 -2.05 2.45 -90.41 -0.22 -2.28 16 17 H 0.12 2.16 6.46 -51.93 -0.34 1.83 16 18 C -0.10 -1.57 6.45 -24.87 -0.16 -1.73 16 19 C 0.02 0.30 4.69 -1.89 -0.01 0.30 16 20 N -0.51 -6.86 5.32 -230.45 -1.23 -8.09 16 21 C 0.00 0.00 5.15 -3.83 -0.02 -0.02 16 22 C 0.46 5.08 3.07 37.16 0.11 5.19 16 23 F -0.17 -2.18 17.24 2.25 0.04 -2.15 16 24 F -0.19 -2.01 17.32 2.25 0.04 -1.98 16 25 F -0.18 -2.15 13.56 2.25 0.03 -2.12 16 26 C 0.05 0.81 6.22 -2.76 -0.02 0.80 16 27 H 0.10 1.36 7.84 -52.48 -0.41 0.95 16 28 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.08 1.53 7.73 -51.93 -0.40 1.13 16 31 H 0.08 1.49 7.35 -51.93 -0.38 1.11 16 32 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.04 0.96 5.80 -51.93 -0.30 0.66 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 36 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 37 H 0.06 0.72 7.36 -51.93 -0.38 0.34 16 38 H 0.09 1.15 6.97 -51.93 -0.36 0.79 16 39 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.08 0.75 7.81 -51.93 -0.41 0.35 16 41 H 0.10 1.70 6.78 -51.93 -0.35 1.34 16 42 H 0.05 0.70 7.57 -51.92 -0.39 0.31 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -27.84 355.73 -6.98 -34.82 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.79 Total: 3.77 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.80 Total: 3.03 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.92 Total: -43.43 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.84 -6.98 -34.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293962181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.966 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds