Wall clock time and date at job start Tue Mar 31 2020 12:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47025 * 2 1 4 4 H 1.09004 * 109.46703 * 305.70212 * 3 2 1 5 5 C 1.50699 * 109.47172 * 185.70393 * 3 2 1 6 6 O 1.20825 * 119.99951 * 239.99816 * 5 3 2 7 7 O 1.34232 * 119.99813 * 59.99703 * 5 3 2 8 8 C 1.45202 * 116.99803 * 180.02562 * 7 5 3 9 9 C 1.50700 * 109.47530 * 65.70131 * 3 2 1 10 10 O 1.21282 * 119.99512 * 34.93107 * 9 3 2 11 11 N 1.34769 * 120.00380 * 214.93461 * 9 3 2 12 12 C 1.46501 * 119.99894 * 354.97414 * 11 9 3 13 13 C 1.50701 * 109.47346 * 275.56192 * 12 11 9 14 14 H 1.07996 * 119.99937 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99580 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00414 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99523 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47010 * 59.99895 * 17 15 13 19 19 H 1.48495 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47004 * 299.99870 * 17 15 13 21 21 C 1.46500 * 120.00088 * 174.97781 * 11 9 3 22 22 C 1.50706 * 109.46951 * 90.00049 * 21 11 9 23 23 C 1.38223 * 119.62161 * 94.98105 * 22 21 11 24 24 C 1.38623 * 119.16382 * 179.79096 * 23 22 21 25 25 C 1.38677 * 118.41543 * 0.46793 * 24 23 22 26 26 C 1.38171 * 119.16562 * 359.51079 * 25 24 23 27 27 N 1.31855 * 119.61432 * 274.99928 * 22 21 11 28 28 H 1.09006 * 109.47263 * 64.85780 * 1 2 3 29 29 H 1.09000 * 109.47098 * 184.85393 * 1 2 3 30 30 H 1.08997 * 109.47212 * 304.85730 * 1 2 3 31 31 H 1.09004 * 109.47163 * 239.99970 * 2 1 3 32 32 H 1.09000 * 109.47076 * 119.99905 * 2 1 3 33 33 H 1.09000 * 109.46869 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46955 * 300.00012 * 8 7 5 35 35 H 1.09000 * 109.47086 * 59.99728 * 8 7 5 36 36 H 1.08999 * 109.47075 * 35.56364 * 12 11 9 37 37 H 1.09002 * 109.47018 * 155.55940 * 12 11 9 38 38 H 0.97003 * 120.00028 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.47176 * 329.99706 * 21 11 9 40 40 H 1.08998 * 109.46979 * 209.99393 * 21 11 9 41 41 H 1.08009 * 120.41538 * 359.97438 * 23 22 21 42 42 H 1.07996 * 120.79168 * 180.22565 * 24 23 22 43 43 H 1.08006 * 120.41499 * 179.78280 * 25 24 23 44 44 H 1.08001 * 119.61805 * 180.25023 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5956 1.9849 -0.8346 5 6 3.5403 1.4449 -0.1412 6 8 4.2275 1.9387 0.7212 7 8 4.1133 0.8983 -1.2251 8 6 5.5632 0.9359 -1.2940 9 6 1.6562 2.1111 1.2949 10 8 1.6367 1.4713 2.3251 11 7 1.3348 3.4198 1.3082 12 6 1.4641 4.2183 0.0868 13 6 2.8842 4.7043 -0.0476 14 1 3.6170 4.4448 0.7020 15 6 3.2476 5.4813 -1.1271 16 7 2.3549 5.7986 -2.0392 17 14 5.0082 6.0832 -1.2941 18 1 5.9251 4.9173 -1.3661 19 1 5.1392 6.8926 -2.5321 20 1 5.3598 6.9175 -0.1170 21 6 0.8560 4.0439 2.5442 22 6 2.0291 4.5828 3.3218 23 6 2.3922 5.9089 3.1793 24 6 3.4700 6.3956 3.9025 25 6 4.1516 5.5239 4.7384 26 6 3.7304 4.2112 4.8298 27 7 2.6975 3.7837 4.1301 28 1 -0.3634 0.4366 -0.9303 29 1 -0.3633 -1.0240 0.0870 30 1 -0.3633 0.5873 0.8432 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8954 0.4625 -2.2179 34 1 5.9011 1.9721 -1.2751 35 1 5.9814 0.4018 -0.4408 36 1 1.2066 3.6054 -0.7769 37 1 0.7907 5.0738 0.1390 38 1 2.6105 6.3455 -2.7985 39 1 0.3309 3.3022 3.1460 40 1 0.1766 4.8603 2.2993 41 1 1.8411 6.5583 2.5151 42 1 3.7741 7.4281 3.8140 43 1 4.9982 5.8680 5.3140 44 1 4.2534 3.5270 5.4817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298531267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:32 Heat of formation + Delta-G solvation = -83.742356 kcal Electronic energy + Delta-G solvation = -28889.648080 eV Core-core repulsion = 25000.526535 eV Total energy + Delta-G solvation = -3889.121545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37819 -39.64809 -38.61239 -35.81648 -35.22628 -34.14991 -32.73656 -31.90792 -31.21602 -28.84522 -27.65126 -26.99650 -25.71204 -23.17485 -22.85742 -22.22991 -21.69112 -20.77243 -18.21101 -17.35095 -16.95871 -16.37198 -16.27845 -16.09612 -15.73758 -15.52814 -15.26736 -14.97968 -14.47687 -13.99922 -13.64620 -13.36379 -13.30196 -12.89723 -12.81030 -12.53152 -12.41535 -12.17989 -12.14050 -11.86647 -11.71621 -11.48658 -11.40765 -11.25049 -10.98508 -10.96887 -10.77670 -10.51024 -10.30294 -10.13442 -9.80213 -9.64850 -9.35316 -9.08195 -8.87184 -8.58923 -8.43287 -7.74646 -6.18413 -4.22445 1.59107 1.83524 2.80399 2.90008 3.22416 3.26725 3.32700 3.73580 3.84511 4.33365 4.48299 4.82886 4.94174 5.14892 5.19924 5.24184 5.26172 5.29080 5.43699 5.50276 5.52393 5.56257 5.64515 5.66684 5.80426 5.86567 5.90980 5.96379 6.00846 6.16712 6.20219 6.25921 6.38346 6.47319 6.60925 6.66988 6.68599 6.88281 7.09030 7.20649 7.48683 7.81191 8.05978 8.25408 8.35491 8.60554 8.85542 9.02053 9.45177 10.88456 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.007401 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.028652 B = 3782.416019 C = 5087.287134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.099 4.099 4 H 0.132 0.868 5 C 0.485 3.515 6 O -0.481 6.481 7 O -0.361 6.361 8 C 0.039 3.961 9 C 0.543 3.457 10 O -0.534 6.534 11 N -0.589 5.589 12 C 0.234 3.766 13 C -0.525 4.525 14 H 0.066 0.934 15 C 0.067 3.933 16 N -0.893 5.893 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.173 3.827 22 C 0.125 3.875 23 C -0.136 4.136 24 C -0.084 4.084 25 C -0.181 4.181 26 C 0.090 3.910 27 N -0.454 5.454 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.264 0.736 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -4.553 3.909 6.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.121 4.121 4 H 0.150 0.850 5 C 0.326 3.674 6 O -0.365 6.365 7 O -0.278 6.278 8 C -0.055 4.055 9 C 0.329 3.671 10 O -0.411 6.411 11 N -0.320 5.320 12 C 0.114 3.886 13 C -0.564 4.564 14 H 0.084 0.916 15 C -0.135 4.135 16 N -0.532 5.532 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.049 3.951 22 C -0.015 4.015 23 C -0.156 4.156 24 C -0.110 4.110 25 C -0.202 4.202 26 C -0.068 4.068 27 N -0.163 5.163 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.981 -5.495 4.599 7.233 hybrid contribution 1.899 1.713 -0.512 2.608 sum 0.918 -3.782 4.087 5.644 Atomic orbital electron populations 1.21755 0.94727 1.01926 1.02228 1.21395 0.96927 0.92614 1.03433 1.21252 0.90098 0.99921 1.00792 0.85023 1.22742 0.90731 0.74603 0.79311 1.90700 1.64568 1.40311 1.40964 1.86432 1.23694 1.73709 1.43967 1.23162 0.77125 1.02919 1.02340 1.19395 0.76789 0.82176 0.88740 1.90649 1.52663 1.64537 1.33286 1.48092 1.64093 1.08389 1.11386 1.19558 0.97837 0.90841 0.80360 1.21527 0.95088 1.31737 1.08063 0.91558 1.24862 0.97187 0.95925 0.95569 1.69900 1.33646 1.37717 1.11907 0.86697 0.85367 0.78965 0.77351 1.20326 1.21206 1.20177 1.20123 0.91741 0.97896 0.85385 1.21595 0.96730 0.89881 0.93257 1.21953 0.98039 0.96922 0.98695 1.21464 0.94738 0.99844 0.94994 1.22014 1.01279 0.95588 1.01285 1.22616 0.93618 0.93632 0.96918 1.67555 1.06322 1.37137 1.05256 0.92394 0.92313 0.92263 0.90340 0.90476 0.88584 0.91882 0.92420 0.94614 0.94167 0.92609 0.89351 0.89372 0.84774 0.85549 0.85752 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.81 37.16 0.36 -1.66 16 2 C -0.11 -1.65 5.14 -26.73 -0.14 -1.79 16 3 C -0.10 -1.91 2.10 -92.93 -0.20 -2.11 16 4 H 0.13 2.53 5.81 -51.93 -0.30 2.22 16 5 C 0.49 10.33 6.86 36.01 0.25 10.58 16 6 O -0.48 -11.88 15.02 -18.75 -0.28 -12.16 16 7 O -0.36 -6.71 10.36 -39.26 -0.41 -7.11 16 8 C 0.04 0.60 10.56 101.05 1.07 1.67 16 9 C 0.54 11.67 4.83 -10.99 -0.05 11.61 16 10 O -0.53 -12.45 15.66 5.56 0.09 -12.37 16 11 N -0.59 -12.44 2.45 -176.43 -0.43 -12.88 16 12 C 0.23 5.35 5.01 -5.19 -0.03 5.33 16 13 C -0.53 -13.56 8.75 -34.44 -0.30 -13.86 16 14 H 0.07 1.90 7.24 -52.49 -0.38 1.52 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -23.99 13.29 55.43 0.74 -23.26 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.17 3.26 5.72 -5.19 -0.03 3.23 16 22 C 0.12 2.48 6.36 -82.58 -0.53 1.95 16 23 C -0.14 -2.48 9.72 -39.44 -0.38 -2.86 16 24 C -0.08 -1.39 10.18 -39.28 -0.40 -1.79 16 25 C -0.18 -2.87 10.11 -39.44 -0.40 -3.26 16 26 C 0.09 1.59 11.18 -17.55 -0.20 1.40 16 27 N -0.45 -9.41 10.27 -9.47 -0.10 -9.51 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.89 7.16 -51.93 -0.37 0.52 16 31 H 0.08 1.07 7.98 -51.93 -0.41 0.66 16 32 H 0.08 1.28 7.65 -51.93 -0.40 0.89 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 35 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.04 0.84 5.89 -51.93 -0.31 0.53 16 37 H 0.04 0.93 7.83 -51.93 -0.41 0.53 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.09 1.65 7.50 -51.93 -0.39 1.26 16 40 H 0.09 1.41 7.76 -51.93 -0.40 1.01 16 41 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 42 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 44 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -32.95 375.76 -7.13 -40.08 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.31 Total: 5.17 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -1.07 Total: 10.10 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.21 Total: -45.64 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.60 Total: -31.64 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.95 -7.13 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298531267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.667 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds