Wall clock time and date at job start Tue Mar 31 2020 12:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47025 * 2 1 4 4 H 1.09004 * 109.46703 * 305.70212 * 3 2 1 5 5 C 1.50699 * 109.47172 * 185.70393 * 3 2 1 6 6 O 1.20825 * 119.99951 * 239.99816 * 5 3 2 7 7 O 1.34232 * 119.99813 * 59.99703 * 5 3 2 8 8 C 1.45202 * 116.99803 * 180.02562 * 7 5 3 9 9 C 1.50700 * 109.47530 * 65.70131 * 3 2 1 10 10 O 1.21282 * 119.99512 * 34.93107 * 9 3 2 11 11 N 1.34769 * 120.00380 * 214.93461 * 9 3 2 12 12 C 1.46501 * 119.99894 * 354.97414 * 11 9 3 13 13 C 1.50701 * 109.47346 * 275.56192 * 12 11 9 14 14 H 1.07996 * 119.99937 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99580 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00414 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99523 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47010 * 59.99895 * 17 15 13 19 19 H 1.48495 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47004 * 299.99870 * 17 15 13 21 21 C 1.46500 * 120.00088 * 174.97781 * 11 9 3 22 22 C 1.50706 * 109.46951 * 90.00049 * 21 11 9 23 23 C 1.38223 * 119.62161 * 94.98105 * 22 21 11 24 24 C 1.38623 * 119.16382 * 179.79096 * 23 22 21 25 25 C 1.38677 * 118.41543 * 0.46793 * 24 23 22 26 26 C 1.38171 * 119.16562 * 359.51079 * 25 24 23 27 27 N 1.31855 * 119.61432 * 274.99928 * 22 21 11 28 28 H 1.09006 * 109.47263 * 64.85780 * 1 2 3 29 29 H 1.09000 * 109.47098 * 184.85393 * 1 2 3 30 30 H 1.08997 * 109.47212 * 304.85730 * 1 2 3 31 31 H 1.09004 * 109.47163 * 239.99970 * 2 1 3 32 32 H 1.09000 * 109.47076 * 119.99905 * 2 1 3 33 33 H 1.09000 * 109.46869 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46955 * 300.00012 * 8 7 5 35 35 H 1.09000 * 109.47086 * 59.99728 * 8 7 5 36 36 H 1.08999 * 109.47075 * 35.56364 * 12 11 9 37 37 H 1.09002 * 109.47018 * 155.55940 * 12 11 9 38 38 H 0.97003 * 120.00028 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.47176 * 329.99706 * 21 11 9 40 40 H 1.08998 * 109.46979 * 209.99393 * 21 11 9 41 41 H 1.08009 * 120.41538 * 359.97438 * 23 22 21 42 42 H 1.07996 * 120.79168 * 180.22565 * 24 23 22 43 43 H 1.08006 * 120.41499 * 179.78280 * 25 24 23 44 44 H 1.08001 * 119.61805 * 180.25023 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5956 1.9849 -0.8346 5 6 3.5403 1.4449 -0.1412 6 8 4.2275 1.9387 0.7212 7 8 4.1133 0.8983 -1.2251 8 6 5.5632 0.9359 -1.2940 9 6 1.6562 2.1111 1.2949 10 8 1.6367 1.4713 2.3251 11 7 1.3348 3.4198 1.3082 12 6 1.4641 4.2183 0.0868 13 6 2.8842 4.7043 -0.0476 14 1 3.6170 4.4448 0.7020 15 6 3.2476 5.4813 -1.1271 16 7 2.3549 5.7986 -2.0392 17 14 5.0082 6.0832 -1.2941 18 1 5.9251 4.9173 -1.3661 19 1 5.1392 6.8926 -2.5321 20 1 5.3598 6.9175 -0.1170 21 6 0.8560 4.0439 2.5442 22 6 2.0291 4.5828 3.3218 23 6 2.3922 5.9089 3.1793 24 6 3.4700 6.3956 3.9025 25 6 4.1516 5.5239 4.7384 26 6 3.7304 4.2112 4.8298 27 7 2.6975 3.7837 4.1301 28 1 -0.3634 0.4366 -0.9303 29 1 -0.3633 -1.0240 0.0870 30 1 -0.3633 0.5873 0.8432 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8954 0.4625 -2.2179 34 1 5.9011 1.9721 -1.2751 35 1 5.9814 0.4018 -0.4408 36 1 1.2066 3.6054 -0.7769 37 1 0.7907 5.0738 0.1390 38 1 2.6105 6.3455 -2.7985 39 1 0.3309 3.3022 3.1460 40 1 0.1766 4.8603 2.2993 41 1 1.8411 6.5583 2.5151 42 1 3.7741 7.4281 3.8140 43 1 4.9982 5.8680 5.3140 44 1 4.2534 3.5270 5.4817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298531267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:31 Heat of formation + Delta-G solvation = -103.166076 kcal Electronic energy + Delta-G solvation = -28890.490356 eV Core-core repulsion = 25000.526535 eV Total energy + Delta-G solvation = -3889.963821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.99301 -41.08381 -40.19963 -37.43973 -36.91970 -35.60659 -34.63720 -33.31010 -32.68127 -30.20387 -29.41826 -28.44412 -27.19460 -24.99485 -24.28323 -23.61543 -23.12525 -22.25740 -19.85257 -19.00823 -18.70775 -18.07580 -17.78029 -17.65714 -17.20600 -17.06370 -16.79421 -16.46444 -16.27496 -15.47942 -15.11746 -14.80034 -14.70407 -14.37217 -14.24976 -14.06275 -14.02216 -13.74919 -13.64126 -13.39264 -13.19818 -13.14418 -12.83769 -12.79641 -12.67448 -12.55998 -12.22171 -12.08089 -11.83026 -11.76804 -11.68070 -11.35602 -10.84583 -10.69910 -10.55025 -10.30565 -9.86800 -9.46264 -8.20553 -6.28317 0.22385 0.48176 1.18727 1.28968 1.30111 1.32992 1.41000 2.16015 2.25489 2.40598 3.05159 3.10340 3.41789 3.50006 3.76880 3.87338 3.92103 4.03394 4.08228 4.24616 4.25616 4.27913 4.31955 4.42159 4.49824 4.51638 4.60308 4.62937 4.81355 4.82401 4.88768 4.91701 5.05531 5.17214 5.21604 5.27477 5.32984 5.33542 5.36286 5.67473 5.82447 5.88209 6.08904 6.51412 6.73080 6.84712 7.21630 7.29033 7.42906 8.84766 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.007401 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.028652 B = 3782.416019 C = 5087.287134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.100 4.100 4 H 0.134 0.866 5 C 0.483 3.517 6 O -0.524 6.524 7 O -0.356 6.356 8 C 0.032 3.968 9 C 0.539 3.461 10 O -0.558 6.558 11 N -0.589 5.589 12 C 0.247 3.753 13 C -0.517 4.517 14 H 0.037 0.963 15 C 0.035 3.965 16 N -0.910 5.910 17 Si 0.927 3.073 18 H -0.287 1.287 19 H -0.275 1.275 20 H -0.276 1.276 21 C 0.168 3.832 22 C 0.101 3.899 23 C -0.149 4.149 24 C -0.089 4.089 25 C -0.171 4.171 26 C 0.071 3.929 27 N -0.492 5.492 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.143 0.857 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.267 0.733 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 -4.463 3.339 5.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.122 4.122 4 H 0.151 0.849 5 C 0.326 3.674 6 O -0.412 6.412 7 O -0.273 6.273 8 C -0.061 4.061 9 C 0.326 3.674 10 O -0.437 6.437 11 N -0.320 5.320 12 C 0.127 3.873 13 C -0.556 4.556 14 H 0.055 0.945 15 C -0.166 4.166 16 N -0.549 5.549 17 Si 0.754 3.246 18 H -0.213 1.213 19 H -0.200 1.200 20 H -0.201 1.201 21 C 0.045 3.955 22 C -0.037 4.037 23 C -0.169 4.169 24 C -0.115 4.115 25 C -0.191 4.191 26 C -0.086 4.086 27 N -0.202 5.202 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.405 -5.402 4.011 6.741 hybrid contribution 1.799 1.666 -0.296 2.470 sum 1.394 -3.736 3.715 5.450 Atomic orbital electron populations 1.21738 0.93012 1.03344 1.02038 1.21443 0.98345 0.89999 1.03910 1.21366 0.89201 1.02140 0.99513 0.84901 1.23146 0.91406 0.73679 0.79183 1.90679 1.65626 1.42353 1.42506 1.86424 1.25486 1.72829 1.42536 1.23494 0.75333 1.02153 1.05149 1.19755 0.76170 0.82181 0.89248 1.90623 1.53713 1.64978 1.34353 1.48091 1.63915 1.08343 1.11602 1.19285 0.96234 0.90744 0.81051 1.21404 0.95623 1.31476 1.07115 0.94501 1.25291 0.99456 0.96271 0.95563 1.69938 1.34532 1.38263 1.12212 0.86094 0.82495 0.78316 0.77687 1.21275 1.19951 1.20136 1.20312 0.92179 0.98482 0.84567 1.21676 0.97342 0.90666 0.94052 1.22100 0.99017 0.96486 0.99342 1.21897 0.93888 1.01441 0.94240 1.22409 1.01630 0.94506 1.00558 1.23106 0.93280 0.95235 0.97006 1.67504 1.07822 1.38380 1.06475 0.91028 0.89745 0.94317 0.87894 0.91814 0.83950 0.94173 0.91698 0.94882 0.94291 0.92391 0.89738 0.87002 0.84430 0.82577 0.81878 0.81769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.81 71.98 0.71 -2.99 16 2 C -0.10 -3.00 5.14 30.59 0.16 -2.84 16 3 C -0.10 -3.89 2.10 -12.29 -0.03 -3.92 16 4 H 0.13 5.08 5.81 -2.38 -0.01 5.07 16 5 C 0.48 20.67 6.86 71.24 0.49 21.16 16 6 O -0.52 -26.47 15.02 21.97 0.33 -26.14 16 7 O -0.36 -12.91 10.36 -51.43 -0.53 -13.45 16 8 C 0.03 0.95 10.56 113.37 1.20 2.15 16 9 C 0.54 23.62 4.83 87.66 0.42 24.04 16 10 O -0.56 -26.72 15.66 -3.04 -0.05 -26.77 16 11 N -0.59 -25.34 2.45 -830.50 -2.04 -27.38 16 12 C 0.25 11.41 5.01 85.63 0.43 11.83 16 13 C -0.52 -26.87 8.75 25.60 0.22 -26.64 16 14 H 0.04 2.15 7.24 -2.91 -0.02 2.12 16 15 C 0.03 1.82 5.46 84.65 0.46 2.28 16 16 N -0.91 -48.27 13.29 21.45 0.28 -47.98 16 17 Si 0.93 43.15 29.54 68.60 2.03 45.18 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 C 0.17 6.48 5.72 85.63 0.49 6.97 16 22 C 0.10 4.08 6.36 42.55 0.27 4.35 16 23 C -0.15 -5.41 9.72 22.36 0.22 -5.19 16 24 C -0.09 -2.77 10.18 22.47 0.23 -2.54 16 25 C -0.17 -5.08 10.11 22.36 0.23 -4.85 16 26 C 0.07 2.48 11.18 84.67 0.95 3.43 16 27 N -0.49 -20.77 10.27 -183.89 -1.89 -22.66 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.14 7.16 -2.39 -0.02 1.13 16 31 H 0.10 2.59 7.98 -2.39 -0.02 2.57 16 32 H 0.06 2.10 7.65 -2.39 -0.02 2.08 16 33 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.04 1.38 8.13 -2.38 -0.02 1.36 16 35 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 36 H 0.03 1.56 5.89 -2.39 -0.01 1.54 16 37 H 0.04 1.81 7.83 -2.39 -0.02 1.79 16 38 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 39 H 0.08 3.26 7.50 -2.39 -0.02 3.25 16 40 H 0.11 3.62 7.76 -2.39 -0.02 3.60 16 41 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 43 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 44 H 0.17 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -71.90 375.76 5.57 -66.33 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 1.00 Total: 25.63 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: 6.44 Total: 27.24 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -3.64 Total: -98.03 kcal Atomic # 8 Polarization: -66.10 SS G_CDS: -0.25 Total: -66.35 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -71.90 5.57 -66.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298531267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.840 kcal (2) G-P(sol) polarization free energy of solvation -71.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds