Wall clock time and date at job start Tue Mar 31 2020 12:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 N 1.46503 * 109.47163 * 179.97438 * 3 2 1 5 5 C 1.46502 * 120.00072 * 270.00444 * 4 3 2 6 6 C 1.52996 * 109.46837 * 262.07515 * 5 4 3 7 7 C 1.34771 * 119.99933 * 89.99925 * 4 3 2 8 8 O 1.21361 * 120.00014 * 1.49910 * 7 4 3 9 9 C 1.49354 * 120.00079 * 181.50365 * 7 4 3 10 10 O 1.21375 * 120.00102 * 2.82601 * 9 7 4 11 11 N 1.34772 * 120.00231 * 182.82515 * 9 7 4 12 12 C 1.39728 * 120.00270 * 176.39778 * 11 9 7 13 13 C 1.39022 * 120.03785 * 35.99004 * 12 11 9 14 14 C 1.38143 * 120.05732 * 180.02562 * 13 12 11 15 15 C 1.38176 * 120.14786 * 359.72892 * 14 13 12 16 16 C 1.38916 * 120.07810 * 0.54898 * 15 14 13 17 17 O 1.35758 * 120.02945 * 179.72360 * 16 15 14 18 18 C 1.34824 * 117.00101 * 173.76400 * 17 16 15 19 19 H 1.08001 * 120.00185 * 5.16397 * 18 17 16 20 20 C 1.38651 * 120.00332 * 185.16730 * 18 17 16 21 21 N 1.31561 * 119.99561 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00397 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47031 * 89.99918 * 22 20 18 24 24 H 1.48507 * 109.47074 * 209.99703 * 22 20 18 25 25 H 1.48498 * 109.47070 * 329.99890 * 22 20 18 26 26 C 1.38758 * 119.94294 * 359.45056 * 16 15 14 27 27 H 1.09003 * 109.46846 * 59.99715 * 1 2 3 28 28 H 1.08997 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47316 * 300.00010 * 1 2 3 30 30 H 1.08996 * 109.46687 * 240.00001 * 2 1 3 31 31 H 1.08999 * 109.46996 * 119.99805 * 2 1 3 32 32 H 1.09005 * 109.47161 * 60.00399 * 3 2 1 33 33 H 1.09003 * 109.47549 * 299.99854 * 3 2 1 34 34 H 1.09003 * 109.46930 * 22.07564 * 5 4 3 35 35 H 1.08999 * 109.47514 * 142.07764 * 5 4 3 36 36 H 1.08994 * 109.47621 * 299.99805 * 6 5 4 37 37 H 1.09003 * 109.47529 * 60.00482 * 6 5 4 38 38 H 1.09007 * 109.47243 * 180.02562 * 6 5 4 39 39 H 0.97004 * 119.99833 * 356.40264 * 11 9 7 40 40 H 1.07995 * 119.97233 * 0.02562 * 13 12 11 41 41 H 1.08007 * 119.92347 * 180.02562 * 14 13 12 42 42 H 1.08000 * 119.95862 * 180.27201 * 15 14 13 43 43 H 0.97000 * 120.00103 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.07413 * 180.25423 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4426 1.2697 6 6 4.6640 2.8714 1.6119 7 6 4.1793 1.4424 -1.1663 8 8 3.5733 1.4697 -2.2174 9 6 5.6725 1.4085 -1.1659 10 8 6.2775 1.3293 -0.1166 11 7 6.3482 1.4658 -2.3306 12 6 7.7447 1.5100 -2.3267 13 6 8.4610 0.7955 -1.3732 14 6 9.8417 0.8394 -1.3687 15 6 10.5153 1.5885 -2.3144 16 6 9.8054 2.3093 -3.2663 17 8 10.4681 3.0494 -4.1916 18 6 9.7280 3.6197 -5.1637 19 1 8.6508 3.5475 -5.1349 20 6 10.3498 4.2987 -6.2003 21 7 11.6620 4.3871 -6.2351 22 14 9.3245 5.0882 -7.5475 23 1 8.9926 6.4837 -7.1635 24 1 10.0952 5.0941 -8.8170 25 1 8.0708 4.3143 -7.7331 26 6 8.4185 2.2678 -3.2742 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8900 34 1 3.5936 1.0564 2.0602 35 1 5.1208 0.8111 1.1795 36 1 5.3074 3.2576 0.8214 37 1 3.7802 3.5030 1.7022 38 1 5.2091 2.8715 2.5559 39 1 5.8649 1.4764 -3.1716 40 1 7.9376 0.2057 -0.6354 41 1 10.3960 0.2832 -0.6272 42 1 11.5949 1.6171 -2.3108 43 1 12.0971 4.8624 -6.9601 44 1 7.8645 2.8241 -4.0158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299413275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:36 Heat of formation + Delta-G solvation = -59.608710 kcal Electronic energy + Delta-G solvation = -26672.447827 eV Core-core repulsion = 22784.372796 eV Total energy + Delta-G solvation = -3888.075032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.14820 -39.45437 -38.43679 -36.99755 -36.38235 -34.43764 -33.78028 -32.26536 -30.54450 -29.56789 -28.78028 -27.26411 -25.40357 -24.57176 -23.39136 -22.20984 -21.87784 -20.90187 -19.78097 -18.13699 -17.99679 -17.28169 -16.94135 -16.22952 -15.68717 -15.52192 -15.17690 -14.97771 -14.74742 -14.52896 -14.17789 -13.96591 -13.79454 -13.63668 -13.39196 -13.04082 -12.83536 -12.57571 -12.47087 -12.36095 -12.09140 -11.79625 -11.70001 -11.62086 -11.58461 -11.13445 -11.06622 -10.96904 -10.95702 -10.82004 -10.46376 -9.84747 -9.54826 -9.30087 -8.99655 -8.83777 -7.84237 -7.24395 -6.47314 -4.07316 1.21351 2.04364 2.23901 2.36674 3.11329 3.12898 3.16993 3.18263 3.37346 3.94831 4.24738 4.52963 4.59611 4.60732 4.77623 4.94340 5.05469 5.06394 5.14927 5.23574 5.29795 5.32761 5.43031 5.55962 5.61872 5.66909 5.73068 5.79012 5.89362 5.92224 5.98169 6.07633 6.16602 6.20756 6.22892 6.54140 6.73951 6.87532 6.91592 7.06258 7.22597 7.36176 7.40618 7.66646 7.72316 7.96084 8.03289 8.98053 9.66495 10.70398 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002947 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.139300 B = 9498.392705 C =10621.249276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.111 3.889 4 N -0.584 5.584 5 C 0.088 3.912 6 C -0.161 4.161 7 C 0.509 3.491 8 O -0.520 6.520 9 C 0.503 3.497 10 O -0.494 6.494 11 N -0.636 5.636 12 C 0.171 3.829 13 C -0.202 4.202 14 C -0.065 4.065 15 C -0.194 4.194 16 C 0.167 3.833 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.091 0.909 20 C 0.041 3.959 21 N -0.861 5.861 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.249 4.249 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.418 0.582 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.270 0.730 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.969 -6.912 13.671 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.011 4.011 4 N -0.318 5.318 5 C -0.033 4.033 6 C -0.219 4.219 7 C 0.291 3.709 8 O -0.396 6.396 9 C 0.285 3.715 10 O -0.370 6.370 11 N -0.281 5.281 12 C 0.078 3.922 13 C -0.222 4.222 14 C -0.084 4.084 15 C -0.214 4.214 16 C 0.112 3.888 17 O -0.077 6.077 18 C -0.470 4.470 19 H 0.108 0.892 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.271 4.271 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.255 0.745 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.080 0.920 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.486 -6.767 13.681 23.210 hybrid contribution -0.858 0.528 -1.057 1.460 sum -18.343 -6.239 12.623 23.124 Atomic orbital electron populations 1.21687 0.94873 1.02078 1.02017 1.21890 0.96367 0.96829 1.02784 1.21681 0.78235 0.97489 1.03688 1.47899 1.06836 1.70747 1.06268 1.22227 0.98149 0.99460 0.83501 1.22087 1.01084 0.96149 1.02601 1.20118 0.88377 0.78053 0.84318 1.90763 1.69806 1.48252 1.30750 1.20058 0.88310 0.78546 0.84545 1.90664 1.69443 1.46690 1.30155 1.43154 1.06019 1.69755 1.09178 1.17403 0.80034 0.97086 0.97650 1.20622 0.93830 1.05307 1.02459 1.20543 0.93406 0.97483 0.96929 1.20308 0.99712 1.02987 0.98358 1.19061 0.89773 0.89820 0.90119 1.84007 1.35006 1.55471 1.33241 1.21292 0.91037 1.33269 1.01370 0.89151 1.25279 0.96169 0.97124 0.97822 1.70037 1.07952 1.39458 1.32141 0.85727 0.79046 0.79398 0.79369 1.19872 1.20207 1.19149 1.20860 0.94655 1.06835 1.04702 0.92356 0.92353 0.92593 0.91408 0.91679 0.90031 0.89492 0.90843 0.86459 0.92035 0.93235 0.91259 0.74498 0.85936 0.86449 0.86240 0.91971 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.14 -1.07 6.26 -26.73 -0.17 -1.24 16 3 C 0.11 0.94 5.38 -4.04 -0.02 0.92 16 4 N -0.58 -6.24 2.49 -174.23 -0.43 -6.68 16 5 C 0.09 0.83 5.72 -4.04 -0.02 0.81 16 6 C -0.16 -1.57 9.71 37.16 0.36 -1.21 16 7 C 0.51 6.90 7.67 -11.63 -0.09 6.81 16 8 O -0.52 -7.97 16.05 5.49 0.09 -7.88 16 9 C 0.50 7.53 7.31 -11.63 -0.08 7.45 16 10 O -0.49 -7.67 9.43 5.48 0.05 -7.61 16 11 N -0.64 -10.16 5.32 -10.31 -0.05 -10.22 16 12 C 0.17 3.21 6.27 -83.77 -0.53 2.69 16 13 C -0.20 -3.66 8.68 -39.33 -0.34 -4.00 16 14 C -0.06 -1.16 10.03 -39.64 -0.40 -1.56 16 15 C -0.19 -4.03 9.99 -39.35 -0.39 -4.43 16 16 C 0.17 3.97 6.64 -39.14 -0.26 3.71 16 17 O -0.17 -4.89 9.76 0.04 0.00 -4.89 16 18 C -0.39 -10.85 9.49 30.88 0.29 -10.56 16 19 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 20 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 22 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.25 -5.35 9.08 -39.19 -0.36 -5.70 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.09 0.84 7.40 -51.93 -0.38 0.45 16 34 H 0.07 0.51 8.01 -51.93 -0.42 0.09 16 35 H 0.12 1.29 5.39 -51.93 -0.28 1.01 16 36 H 0.06 0.77 6.90 -51.93 -0.36 0.41 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.42 6.10 8.30 -40.82 -0.34 5.76 16 40 H 0.12 2.10 6.32 -52.49 -0.33 1.76 16 41 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -31.27 367.89 -6.84 -38.11 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.04 Total: 8.34 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.73 Total: -5.84 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.27 Total: -41.16 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.14 Total: -20.39 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.27 -6.84 -38.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299413275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.494 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds