Wall clock time and date at job start Tue Mar 31 2020 12:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 N 1.46503 * 109.47163 * 179.97438 * 3 2 1 5 5 C 1.46502 * 120.00072 * 270.00444 * 4 3 2 6 6 C 1.52996 * 109.46837 * 262.07515 * 5 4 3 7 7 C 1.34771 * 119.99933 * 89.99925 * 4 3 2 8 8 O 1.21361 * 120.00014 * 1.49910 * 7 4 3 9 9 C 1.49354 * 120.00079 * 181.50365 * 7 4 3 10 10 O 1.21375 * 120.00102 * 2.82601 * 9 7 4 11 11 N 1.34772 * 120.00231 * 182.82515 * 9 7 4 12 12 C 1.39728 * 120.00270 * 176.39778 * 11 9 7 13 13 C 1.39022 * 120.03785 * 35.99004 * 12 11 9 14 14 C 1.38143 * 120.05732 * 180.02562 * 13 12 11 15 15 C 1.38176 * 120.14786 * 359.72892 * 14 13 12 16 16 C 1.38916 * 120.07810 * 0.54898 * 15 14 13 17 17 O 1.35758 * 120.02945 * 179.72360 * 16 15 14 18 18 C 1.34824 * 117.00101 * 173.76400 * 17 16 15 19 19 H 1.08001 * 120.00185 * 5.16397 * 18 17 16 20 20 C 1.38651 * 120.00332 * 185.16730 * 18 17 16 21 21 N 1.31561 * 119.99561 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00397 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47031 * 89.99918 * 22 20 18 24 24 H 1.48507 * 109.47074 * 209.99703 * 22 20 18 25 25 H 1.48498 * 109.47070 * 329.99890 * 22 20 18 26 26 C 1.38758 * 119.94294 * 359.45056 * 16 15 14 27 27 H 1.09003 * 109.46846 * 59.99715 * 1 2 3 28 28 H 1.08997 * 109.47280 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47316 * 300.00010 * 1 2 3 30 30 H 1.08996 * 109.46687 * 240.00001 * 2 1 3 31 31 H 1.08999 * 109.46996 * 119.99805 * 2 1 3 32 32 H 1.09005 * 109.47161 * 60.00399 * 3 2 1 33 33 H 1.09003 * 109.47549 * 299.99854 * 3 2 1 34 34 H 1.09003 * 109.46930 * 22.07564 * 5 4 3 35 35 H 1.08999 * 109.47514 * 142.07764 * 5 4 3 36 36 H 1.08994 * 109.47621 * 299.99805 * 6 5 4 37 37 H 1.09003 * 109.47529 * 60.00482 * 6 5 4 38 38 H 1.09007 * 109.47243 * 180.02562 * 6 5 4 39 39 H 0.97004 * 119.99833 * 356.40264 * 11 9 7 40 40 H 1.07995 * 119.97233 * 0.02562 * 13 12 11 41 41 H 1.08007 * 119.92347 * 180.02562 * 14 13 12 42 42 H 1.08000 * 119.95862 * 180.27201 * 15 14 13 43 43 H 0.97000 * 120.00103 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.07413 * 180.25423 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4426 1.2697 6 6 4.6640 2.8714 1.6119 7 6 4.1793 1.4424 -1.1663 8 8 3.5733 1.4697 -2.2174 9 6 5.6725 1.4085 -1.1659 10 8 6.2775 1.3293 -0.1166 11 7 6.3482 1.4658 -2.3306 12 6 7.7447 1.5100 -2.3267 13 6 8.4610 0.7955 -1.3732 14 6 9.8417 0.8394 -1.3687 15 6 10.5153 1.5885 -2.3144 16 6 9.8054 2.3093 -3.2663 17 8 10.4681 3.0494 -4.1916 18 6 9.7280 3.6197 -5.1637 19 1 8.6508 3.5475 -5.1349 20 6 10.3498 4.2987 -6.2003 21 7 11.6620 4.3871 -6.2351 22 14 9.3245 5.0882 -7.5475 23 1 8.9926 6.4837 -7.1635 24 1 10.0952 5.0941 -8.8170 25 1 8.0708 4.3143 -7.7331 26 6 8.4185 2.2678 -3.2742 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8900 34 1 3.5936 1.0564 2.0602 35 1 5.1208 0.8111 1.1795 36 1 5.3074 3.2576 0.8214 37 1 3.7802 3.5030 1.7022 38 1 5.2091 2.8715 2.5559 39 1 5.8649 1.4764 -3.1716 40 1 7.9376 0.2057 -0.6354 41 1 10.3960 0.2832 -0.6272 42 1 11.5949 1.6171 -2.3108 43 1 12.0971 4.8624 -6.9601 44 1 7.8645 2.8241 -4.0158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299413275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:34 Heat of formation + Delta-G solvation = -79.158239 kcal Electronic energy + Delta-G solvation = -26673.295559 eV Core-core repulsion = 22784.372796 eV Total energy + Delta-G solvation = -3888.922763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32201 -40.91342 -39.87802 -38.29429 -37.66193 -35.73727 -34.54277 -34.24349 -31.34731 -31.12351 -30.41156 -28.17475 -27.31523 -25.61634 -24.31930 -23.55192 -23.11342 -22.12299 -21.00575 -19.81575 -19.37378 -18.68177 -18.07816 -17.30543 -17.07677 -16.84988 -16.67335 -16.09365 -15.96895 -15.73382 -15.58697 -15.48877 -15.19322 -14.75268 -14.56377 -14.33729 -14.15770 -13.59647 -13.55881 -13.33558 -13.24463 -13.00996 -12.96342 -12.74355 -12.63407 -12.47534 -12.33788 -12.24991 -12.13210 -11.96170 -11.62473 -11.43737 -11.27962 -10.76630 -10.44438 -9.90743 -9.42223 -8.95398 -8.47950 -6.16652 -0.03162 0.58081 0.69761 1.16049 1.35092 1.43631 1.51873 1.99681 2.16594 2.31093 2.80333 3.08539 3.16302 3.47727 3.94374 3.99143 4.08070 4.09664 4.29449 4.34937 4.37121 4.39243 4.50473 4.54018 4.58964 4.65513 4.65879 4.81179 4.90272 4.99054 5.04975 5.09487 5.16277 5.17546 5.23018 5.29815 5.33883 5.41333 5.47452 5.62394 5.64733 5.87325 6.00122 6.08088 6.18135 6.56121 6.79180 6.96608 7.75028 8.74685 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002947 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.139300 B = 9498.392705 C =10621.249276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.107 3.893 4 N -0.572 5.572 5 C 0.087 3.913 6 C -0.158 4.158 7 C 0.508 3.492 8 O -0.544 6.544 9 C 0.505 3.495 10 O -0.497 6.497 11 N -0.638 5.638 12 C 0.177 3.823 13 C -0.189 4.189 14 C -0.049 4.049 15 C -0.205 4.205 16 C 0.133 3.867 17 O -0.224 6.224 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.019 4.019 21 N -0.917 5.917 22 Si 1.015 2.985 23 H -0.264 1.264 24 H -0.270 1.270 25 H -0.254 1.254 26 C -0.257 4.257 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.423 0.577 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.122 0.878 43 H 0.273 0.727 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.768 -7.892 16.029 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.014 4.014 4 N -0.304 5.304 5 C -0.034 4.034 6 C -0.216 4.216 7 C 0.290 3.710 8 O -0.422 6.422 9 C 0.287 3.713 10 O -0.372 6.372 11 N -0.284 5.284 12 C 0.083 3.917 13 C -0.209 4.209 14 C -0.068 4.068 15 C -0.225 4.225 16 C 0.082 3.918 17 O -0.130 6.130 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.217 4.217 21 N -0.555 5.555 22 Si 0.834 3.166 23 H -0.189 1.189 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.278 4.278 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.262 0.738 40 H 0.160 0.840 41 H 0.179 0.821 42 H 0.140 0.860 43 H 0.082 0.918 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.339 -7.782 16.116 27.092 hybrid contribution -0.121 0.649 -1.448 1.591 sum -20.460 -7.133 14.668 26.166 Atomic orbital electron populations 1.21669 0.93539 1.02576 1.02567 1.21841 0.97462 0.95900 1.02153 1.21923 0.76529 0.98363 1.04575 1.48055 1.07885 1.68727 1.05772 1.22322 0.98401 0.99085 0.83608 1.22056 1.01179 0.96370 1.01976 1.19842 0.87467 0.78619 0.85043 1.90760 1.69795 1.49947 1.31706 1.20399 0.89161 0.77767 0.83938 1.90663 1.69898 1.46513 1.30144 1.43153 1.04918 1.70211 1.10146 1.17433 0.81486 0.95985 0.96762 1.20993 0.94111 1.04002 1.01821 1.20984 0.93505 0.95973 0.96294 1.20573 1.00169 1.03227 0.98499 1.19601 0.91073 0.90724 0.90439 1.83973 1.36400 1.57849 1.34811 1.21767 0.91710 1.33622 1.01905 0.88257 1.26526 0.97478 0.97533 1.00197 1.70173 1.10046 1.41652 1.33621 0.84638 0.77582 0.78510 0.75832 1.18938 1.19470 1.17740 1.20856 0.94014 1.07464 1.05473 0.92921 0.91927 0.90941 0.93792 0.90532 0.86932 0.90814 0.87220 0.87901 0.95260 0.91910 0.90044 0.73842 0.83964 0.82145 0.85956 0.91773 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.14 -1.73 6.26 30.59 0.19 -1.54 16 3 C 0.11 1.52 5.38 86.38 0.46 1.99 16 4 N -0.57 -10.88 2.49 -823.50 -2.05 -12.93 16 5 C 0.09 1.35 5.72 86.38 0.49 1.85 16 6 C -0.16 -2.67 9.71 71.98 0.70 -1.97 16 7 C 0.51 13.16 7.67 87.24 0.67 13.83 16 8 O -0.54 -16.37 16.05 -3.28 -0.05 -16.43 16 9 C 0.50 14.46 7.31 87.24 0.64 15.09 16 10 O -0.50 -14.45 9.43 -3.32 -0.03 -14.48 16 11 N -0.64 -19.96 5.32 -304.89 -1.62 -21.58 16 12 C 0.18 6.53 6.27 38.20 0.24 6.77 16 13 C -0.19 -6.43 8.68 22.44 0.19 -6.23 16 14 C -0.05 -1.65 10.03 22.23 0.22 -1.43 16 15 C -0.21 -8.55 9.99 22.42 0.22 -8.33 16 16 C 0.13 6.56 6.64 22.56 0.15 6.71 16 17 O -0.22 -13.32 9.76 -22.77 -0.22 -13.54 16 18 C -0.41 -23.94 9.49 67.92 0.64 -23.30 16 19 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 20 C -0.02 -1.09 5.49 84.83 0.47 -0.63 16 21 N -0.92 -55.89 13.67 21.61 0.30 -55.59 16 22 Si 1.01 42.89 29.55 68.60 2.03 44.91 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 26 C -0.26 -11.27 9.08 22.52 0.20 -11.07 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 0.95 8.07 -2.38 -0.02 0.93 16 33 H 0.07 1.29 7.40 -2.39 -0.02 1.28 16 34 H 0.11 0.98 8.01 -2.39 -0.02 0.97 16 35 H 0.10 1.98 5.39 -2.46 -0.01 1.96 16 36 H 0.03 0.68 6.90 -2.39 -0.02 0.66 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.42 12.30 8.30 -92.71 -0.77 11.54 16 40 H 0.14 4.37 6.32 -2.91 -0.02 4.35 16 41 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 42 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 Total: -1.00 -71.92 367.89 4.82 -67.11 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.26 Total: 31.46 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 6.22 Total: -8.92 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -3.38 Total: -90.11 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -0.31 Total: -44.45 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -71.92 4.82 -67.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299413275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.053 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds