Wall clock time and date at job start Tue Mar 31 2020 12:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46778 * 2 1 4 4 H 1.08994 * 109.47146 * 54.99957 * 3 2 1 5 5 C 1.50704 * 109.46820 * 175.00173 * 3 2 1 6 6 H 1.08001 * 119.99723 * 120.00159 * 5 3 2 7 7 C 1.37879 * 119.99788 * 299.99958 * 5 3 2 8 8 N 1.31513 * 119.99761 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00226 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47004 * 89.99972 * 9 7 5 11 11 H 1.48502 * 109.47151 * 210.00434 * 9 7 5 12 12 H 1.48501 * 109.46731 * 330.00091 * 9 7 5 13 13 N 1.46504 * 109.47126 * 294.99711 * 3 2 1 14 14 C 1.34782 * 119.99565 * 85.00260 * 13 3 2 15 15 O 1.21282 * 119.99970 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99827 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.46891 * 83.66391 * 16 14 13 18 18 C 1.53000 * 109.47309 * 323.66349 * 16 14 13 19 19 C 1.50695 * 109.47150 * 203.66226 * 16 14 13 20 20 C 1.38257 * 120.00429 * 246.86866 * 19 16 14 21 21 C 1.38211 * 120.00501 * 179.72260 * 20 19 16 22 22 C 1.38257 * 119.99804 * 0.28465 * 21 20 19 23 23 C 1.38212 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38216 * 120.00002 * 67.08535 * 19 16 14 25 25 N 1.48019 * 120.00087 * 0.06643 * 24 19 16 26 26 O 1.21802 * 119.99951 * 152.11396 * 25 24 19 27 27 O 1.21799 * 119.99701 * 332.11513 * 25 24 19 28 28 H 1.09001 * 109.46858 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47442 * 299.99708 * 1 2 3 30 30 H 1.08994 * 109.47308 * 60.00485 * 1 2 3 31 31 H 1.09006 * 109.46826 * 240.00132 * 2 1 3 32 32 H 1.09000 * 109.47343 * 120.00228 * 2 1 3 33 33 H 0.97001 * 119.99861 * 180.02562 * 8 7 5 34 34 H 0.96991 * 120.00168 * 264.99851 * 13 3 2 35 35 H 1.09001 * 109.47524 * 178.48164 * 17 16 14 36 36 H 1.09003 * 109.47374 * 298.48604 * 17 16 14 37 37 H 1.09004 * 109.47178 * 58.48069 * 17 16 14 38 38 H 1.08989 * 109.47260 * 292.86435 * 18 16 14 39 39 H 1.09002 * 109.46874 * 52.86534 * 18 16 14 40 40 H 1.09003 * 109.46840 * 172.85926 * 18 16 14 41 41 H 1.08005 * 119.99677 * 0.02562 * 20 19 16 42 42 H 1.08002 * 120.00090 * 180.25568 * 21 20 19 43 43 H 1.07999 * 120.00211 * 179.97438 * 22 21 20 44 44 H 1.08005 * 120.00452 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 5.4539 0.8805 1.3362 9 14 3.0964 0.1088 2.5700 10 1 2.8756 -1.3273 2.2633 11 1 3.7936 0.2348 3.8751 12 1 1.7877 0.8073 2.6386 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6318 -0.4344 16 6 0.0365 3.3386 -2.6544 17 6 -0.4882 2.2905 -3.6378 18 6 1.2530 4.0419 -3.2597 19 6 -1.0434 4.3524 -2.3772 20 6 -2.3190 4.1570 -2.8735 21 6 -3.3109 5.0840 -2.6145 22 6 -3.0261 6.2096 -1.8640 23 6 -1.7497 6.4077 -1.3723 24 6 -0.7577 5.4799 -1.6306 25 7 0.6095 5.6923 -1.1045 26 8 1.0183 6.8230 -0.9101 27 8 1.3255 4.7363 -0.8660 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8770 0.4820 2.1128 34 1 2.2718 2.1232 -1.9977 35 1 -0.8016 2.7813 -4.5592 36 1 0.3014 1.5724 -3.8591 37 1 -1.3383 1.7708 -3.1957 38 1 1.5495 4.8716 -2.6181 39 1 2.0778 3.3341 -3.3427 40 1 0.9984 4.4208 -4.2495 41 1 -2.5415 3.2775 -3.4596 42 1 -4.3083 4.9292 -2.9987 43 1 -3.8011 6.9342 -1.6618 44 1 -1.5271 7.2872 -0.7863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346722690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:53 Heat of formation + Delta-G solvation = 14.475550 kcal Electronic energy + Delta-G solvation = -29203.168456 eV Core-core repulsion = 25318.305959 eV Total energy + Delta-G solvation = -3884.862497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.38317 -40.23670 -38.88265 -36.52789 -35.55423 -34.85927 -32.26326 -32.14670 -31.47839 -30.17703 -27.64538 -27.31642 -26.39681 -24.27439 -22.86137 -22.29986 -22.11395 -20.18373 -19.25758 -19.04826 -18.40685 -17.64567 -17.29955 -16.36661 -15.86926 -15.62491 -15.40827 -15.03926 -14.73441 -14.31320 -14.01594 -13.51445 -13.36282 -13.02793 -12.88418 -12.68402 -12.33864 -12.20709 -12.07758 -12.05765 -11.79656 -11.70065 -11.42385 -11.32810 -11.15685 -10.98127 -10.78122 -10.73818 -10.53739 -10.29719 -9.82238 -9.69140 -9.47639 -9.42244 -9.08559 -8.85671 -8.62345 -7.87904 -6.08603 -4.08862 -0.02846 0.77625 1.31849 1.56227 3.09858 3.30292 3.37667 3.43042 3.49133 4.00912 4.08184 4.23338 4.42302 4.45255 4.70541 4.72949 4.77507 4.94122 4.98534 5.24213 5.26621 5.38357 5.41883 5.54775 5.57400 5.66703 5.70063 5.77816 5.90186 5.99099 6.05412 6.08069 6.12783 6.16733 6.25828 6.58280 6.72202 6.78023 6.95431 7.03306 7.38032 7.48461 7.68071 7.83045 8.29689 8.69771 8.90880 9.10717 9.53329 11.03880 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.004809 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.477056 B = 5821.263421 C = 6294.478109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.049 0.951 5 C -0.525 4.525 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.895 5.895 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.261 1.261 13 N -0.686 5.686 14 C 0.542 3.458 15 O -0.557 6.557 16 C -0.060 4.060 17 C -0.141 4.141 18 C -0.163 4.163 19 C 0.017 3.983 20 C -0.115 4.115 21 C -0.072 4.072 22 C -0.124 4.124 23 C -0.058 4.058 24 C -0.025 4.025 25 N 0.020 4.980 26 O -0.171 6.171 27 O -0.107 6.107 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.265 0.735 34 H 0.392 0.608 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.751 7.568 -12.629 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.144 3.856 4 H 0.067 0.933 5 C -0.563 4.563 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.186 1.186 13 N -0.334 5.334 14 C 0.327 3.673 15 O -0.438 6.438 16 C -0.063 4.063 17 C -0.198 4.198 18 C -0.221 4.221 19 C 0.015 3.985 20 C -0.133 4.133 21 C -0.090 4.090 22 C -0.142 4.142 23 C -0.077 4.077 24 C -0.108 4.108 25 N 0.538 4.462 26 O -0.382 6.382 27 O -0.326 6.326 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.226 0.774 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.166 0.834 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.758 7.427 -12.077 23.513 hybrid contribution 0.265 -0.375 0.638 0.786 sum -18.493 7.052 -11.439 22.860 Atomic orbital electron populations 1.21864 0.97149 0.98713 1.02199 1.22311 0.94199 1.00317 1.00975 1.19081 0.95554 0.87956 0.83024 0.93337 1.21058 0.88664 1.38936 1.07691 0.90107 1.24805 0.94777 0.95364 0.97547 1.69871 1.08626 1.44924 1.29779 0.86946 0.81102 0.79764 0.81119 1.20441 1.22319 1.18558 1.45940 1.14172 1.55656 1.17641 1.19280 0.82823 0.77916 0.87241 1.90646 1.52194 1.61012 1.39921 1.20011 0.94282 0.94745 0.97295 1.21922 1.02361 0.97893 0.97627 1.22434 0.96458 1.02548 1.00615 1.19358 0.95539 0.91038 0.92573 1.21221 0.90724 1.00489 1.00895 1.21533 0.99661 0.92891 0.94920 1.21137 0.95573 0.98843 0.98691 1.20967 0.91783 0.97522 0.97468 1.20894 0.83563 1.00078 1.06250 1.43638 1.02839 1.00633 0.99054 1.94509 1.77587 1.09497 1.56624 1.94603 1.53809 1.32767 1.51383 0.95218 0.92986 0.93005 0.92394 0.92881 0.92480 0.77395 0.91332 0.90664 0.91339 0.91004 0.90015 0.92130 0.83365 0.84176 0.83869 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.14 -3.14 5.11 -26.73 -0.14 -3.27 16 3 C 0.25 6.01 1.83 -69.08 -0.13 5.89 16 4 H 0.05 1.34 6.64 -51.93 -0.34 0.99 16 5 C -0.53 -14.53 9.31 -34.44 -0.32 -14.86 16 6 H 0.08 2.35 7.98 -52.49 -0.42 1.94 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 8 N -0.89 -27.12 13.96 55.43 0.77 -26.34 16 9 Si 0.88 22.42 24.41 -169.99 -4.15 18.27 16 10 H -0.28 -6.80 6.83 56.52 0.39 -6.41 16 11 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 12 H -0.26 -6.64 6.53 56.52 0.37 -6.27 16 13 N -0.69 -13.93 4.37 -54.93 -0.24 -14.17 16 14 C 0.54 10.24 2.19 -10.98 -0.02 10.22 16 15 O -0.56 -12.32 13.14 -10.74 -0.14 -12.46 16 16 C -0.06 -0.85 0.71 -156.82 -0.11 -0.96 16 17 C -0.14 -1.49 7.13 37.16 0.26 -1.23 16 18 C -0.16 -2.22 7.63 37.16 0.28 -1.93 16 19 C 0.02 0.23 4.16 -104.63 -0.43 -0.21 16 20 C -0.11 -1.15 8.99 -39.58 -0.36 -1.51 16 21 C -0.07 -0.57 10.05 -39.58 -0.40 -0.96 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.06 -0.67 9.61 -39.58 -0.38 -1.05 16 24 C -0.03 -0.38 6.24 -79.95 -0.50 -0.88 16 25 N 0.02 0.37 3.13 33.96 0.11 0.48 16 26 O -0.17 -3.07 18.74 -29.46 -0.55 -3.62 16 27 O -0.11 -2.22 11.61 -34.95 -0.41 -2.62 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 30 H 0.05 1.00 5.64 -51.93 -0.29 0.71 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.27 3.21 -51.93 -0.17 1.10 16 33 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.39 7.20 6.62 -40.82 -0.27 6.93 16 35 H 0.07 0.54 7.75 -51.93 -0.40 0.14 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.72 7.29 -51.93 -0.38 0.34 16 38 H 0.07 1.15 4.07 -52.27 -0.21 0.94 16 39 H 0.08 1.06 6.38 -51.93 -0.33 0.73 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.15 1.14 5.93 -52.48 -0.31 0.83 16 42 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.15 1.50 7.86 -52.48 -0.41 1.08 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -34.52 341.00 -7.56 -42.07 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.67 Total: 5.86 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.42 Total: -12.60 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.64 Total: -40.04 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.10 Total: -18.71 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.15 Total: 18.27 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.52 -7.56 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346722690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.549 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds