Wall clock time and date at job start Tue Mar 31 2020 12:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46778 * 2 1 4 4 H 1.08994 * 109.47146 * 54.99957 * 3 2 1 5 5 C 1.50704 * 109.46820 * 175.00173 * 3 2 1 6 6 H 1.08001 * 119.99723 * 120.00159 * 5 3 2 7 7 C 1.37879 * 119.99788 * 299.99958 * 5 3 2 8 8 N 1.31513 * 119.99761 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00226 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47004 * 89.99972 * 9 7 5 11 11 H 1.48502 * 109.47151 * 210.00434 * 9 7 5 12 12 H 1.48501 * 109.46731 * 330.00091 * 9 7 5 13 13 N 1.46504 * 109.47126 * 294.99711 * 3 2 1 14 14 C 1.34782 * 119.99565 * 85.00260 * 13 3 2 15 15 O 1.21282 * 119.99970 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99827 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.46891 * 83.66391 * 16 14 13 18 18 C 1.53000 * 109.47309 * 323.66349 * 16 14 13 19 19 C 1.50695 * 109.47150 * 203.66226 * 16 14 13 20 20 C 1.38257 * 120.00429 * 246.86866 * 19 16 14 21 21 C 1.38211 * 120.00501 * 179.72260 * 20 19 16 22 22 C 1.38257 * 119.99804 * 0.28465 * 21 20 19 23 23 C 1.38212 * 120.00026 * 359.97438 * 22 21 20 24 24 C 1.38216 * 120.00002 * 67.08535 * 19 16 14 25 25 N 1.48019 * 120.00087 * 0.06643 * 24 19 16 26 26 O 1.21802 * 119.99951 * 152.11396 * 25 24 19 27 27 O 1.21799 * 119.99701 * 332.11513 * 25 24 19 28 28 H 1.09001 * 109.46858 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47442 * 299.99708 * 1 2 3 30 30 H 1.08994 * 109.47308 * 60.00485 * 1 2 3 31 31 H 1.09006 * 109.46826 * 240.00132 * 2 1 3 32 32 H 1.09000 * 109.47343 * 120.00228 * 2 1 3 33 33 H 0.97001 * 119.99861 * 180.02562 * 8 7 5 34 34 H 0.96991 * 120.00168 * 264.99851 * 13 3 2 35 35 H 1.09001 * 109.47524 * 178.48164 * 17 16 14 36 36 H 1.09003 * 109.47374 * 298.48604 * 17 16 14 37 37 H 1.09004 * 109.47178 * 58.48069 * 17 16 14 38 38 H 1.08989 * 109.47260 * 292.86435 * 18 16 14 39 39 H 1.09002 * 109.46874 * 52.86534 * 18 16 14 40 40 H 1.09003 * 109.46840 * 172.85926 * 18 16 14 41 41 H 1.08005 * 119.99677 * 0.02562 * 20 19 16 42 42 H 1.08002 * 120.00090 * 180.25568 * 21 20 19 43 43 H 1.07999 * 120.00211 * 179.97438 * 22 21 20 44 44 H 1.08005 * 120.00452 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 5.4539 0.8805 1.3362 9 14 3.0964 0.1088 2.5700 10 1 2.8756 -1.3273 2.2633 11 1 3.7936 0.2348 3.8751 12 1 1.7877 0.8073 2.6386 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6318 -0.4344 16 6 0.0365 3.3386 -2.6544 17 6 -0.4882 2.2905 -3.6378 18 6 1.2530 4.0419 -3.2597 19 6 -1.0434 4.3524 -2.3772 20 6 -2.3190 4.1570 -2.8735 21 6 -3.3109 5.0840 -2.6145 22 6 -3.0261 6.2096 -1.8640 23 6 -1.7497 6.4077 -1.3723 24 6 -0.7577 5.4799 -1.6306 25 7 0.6095 5.6923 -1.1045 26 8 1.0183 6.8230 -0.9101 27 8 1.3255 4.7363 -0.8660 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8770 0.4820 2.1128 34 1 2.2718 2.1232 -1.9977 35 1 -0.8016 2.7813 -4.5592 36 1 0.3014 1.5724 -3.8591 37 1 -1.3383 1.7708 -3.1957 38 1 1.5495 4.8716 -2.6181 39 1 2.0778 3.3341 -3.3427 40 1 0.9984 4.4208 -4.2495 41 1 -2.5415 3.2775 -3.4596 42 1 -4.3083 4.9292 -2.9987 43 1 -3.8011 6.9342 -1.6618 44 1 -1.5271 7.2872 -0.7863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346722690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:52 Heat of formation + Delta-G solvation = -8.284166 kcal Electronic energy + Delta-G solvation = -29204.155392 eV Core-core repulsion = 25318.305959 eV Total energy + Delta-G solvation = -3885.849432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.59425 -41.45171 -40.04853 -37.89062 -37.09586 -36.22394 -34.32563 -33.09567 -33.02733 -31.16765 -29.30434 -28.52884 -27.52897 -25.38340 -24.61192 -23.50434 -23.25221 -21.78840 -20.71995 -20.22891 -19.69978 -19.06626 -18.68696 -17.90179 -17.29376 -17.06481 -16.49895 -16.29086 -15.93599 -15.55329 -15.16769 -15.10457 -14.94443 -14.35445 -14.03666 -13.93276 -13.66208 -13.54548 -13.44617 -13.19975 -13.06938 -12.98582 -12.84726 -12.71741 -12.65399 -12.49564 -12.33457 -12.21323 -11.96483 -11.82940 -11.56777 -11.34816 -11.18357 -10.82347 -10.54465 -10.49349 -10.08632 -9.60598 -8.34768 -6.38106 -1.16905 -0.00014 0.22561 0.45555 1.24098 1.33106 1.43668 1.96264 2.27284 2.28465 2.69415 3.01215 3.10244 3.37393 3.72374 3.77308 3.85338 3.98880 4.01732 4.12344 4.25536 4.26636 4.35093 4.49728 4.50369 4.55402 4.69479 4.73334 4.79482 4.86924 4.90280 4.99607 5.02381 5.08441 5.15219 5.17252 5.20759 5.24628 5.27596 5.48751 5.56726 5.60438 5.79944 6.21096 6.42175 6.63601 7.01859 7.24350 7.60852 8.81161 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.004809 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.477056 B = 5821.263421 C = 6294.478109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.137 4.137 3 C 0.258 3.742 4 H 0.010 0.990 5 C -0.525 4.525 6 H 0.052 0.948 7 C 0.028 3.972 8 N -0.936 5.936 9 Si 0.936 3.064 10 H -0.255 1.255 11 H -0.294 1.294 12 H -0.267 1.267 13 N -0.691 5.691 14 C 0.544 3.456 15 O -0.592 6.592 16 C -0.052 4.052 17 C -0.139 4.139 18 C -0.162 4.162 19 C -0.008 4.008 20 C -0.114 4.114 21 C -0.051 4.051 22 C -0.110 4.110 23 C -0.072 4.072 24 C -0.060 4.060 25 N 0.028 4.972 26 O -0.172 6.172 27 O -0.180 6.180 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.268 0.732 34 H 0.398 0.602 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.177 0.823 42 H 0.190 0.810 43 H 0.185 0.815 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.372 7.252 -14.798 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.175 4.175 3 C 0.152 3.848 4 H 0.028 0.972 5 C -0.564 4.564 6 H 0.070 0.930 7 C -0.171 4.171 8 N -0.576 5.576 9 Si 0.764 3.236 10 H -0.180 1.180 11 H -0.222 1.222 12 H -0.192 1.192 13 N -0.339 5.339 14 C 0.332 3.668 15 O -0.475 6.475 16 C -0.055 4.055 17 C -0.196 4.196 18 C -0.219 4.219 19 C -0.010 4.010 20 C -0.132 4.132 21 C -0.069 4.069 22 C -0.128 4.128 23 C -0.091 4.091 24 C -0.143 4.143 25 N 0.538 4.462 26 O -0.389 6.389 27 O -0.385 6.385 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.234 0.766 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.194 0.806 42 H 0.207 0.793 43 H 0.202 0.798 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -23.342 7.021 -14.267 28.243 hybrid contribution 1.556 -0.037 1.226 1.981 sum -21.786 6.984 -13.041 26.334 Atomic orbital electron populations 1.21733 0.95059 1.00436 1.01517 1.22200 0.96019 0.98339 1.00952 1.18637 0.92892 0.89340 0.83881 0.97190 1.21309 0.90570 1.37691 1.06791 0.92983 1.25526 0.95709 0.96123 0.99712 1.69987 1.10209 1.46550 1.30821 0.86042 0.79072 0.80033 0.78439 1.18011 1.22178 1.19235 1.45786 1.15420 1.56326 1.16412 1.20053 0.81429 0.76545 0.88770 1.90604 1.53072 1.62008 1.41807 1.19926 0.94933 0.95618 0.95044 1.22000 1.02458 0.97075 0.98021 1.22404 0.96513 1.01563 1.01456 1.19551 0.96874 0.90530 0.94041 1.21675 0.89285 1.01880 1.00390 1.22163 1.01075 0.91114 0.92503 1.21695 0.94602 0.99673 0.96812 1.21323 0.92577 0.97147 0.98075 1.21277 0.81751 1.02546 1.08677 1.44176 1.04141 0.99857 0.98010 1.94440 1.78508 1.09777 1.56164 1.94595 1.55935 1.33091 1.54832 0.92108 0.95105 0.92302 0.91040 0.94103 0.92237 0.76634 0.87675 0.90656 0.90765 0.93797 0.90465 0.89182 0.80553 0.79292 0.79759 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.51 71.98 0.61 -4.51 16 2 C -0.14 -6.13 5.11 30.59 0.16 -5.97 16 3 C 0.26 13.05 1.83 44.25 0.08 13.13 16 4 H 0.01 0.60 6.64 -2.39 -0.02 0.58 16 5 C -0.53 -30.62 9.31 25.60 0.24 -30.38 16 6 H 0.05 3.25 7.98 -2.91 -0.02 3.22 16 7 C 0.03 1.69 5.45 84.66 0.46 2.15 16 8 N -0.94 -58.93 13.96 21.45 0.30 -58.63 16 9 Si 0.94 47.55 24.41 68.60 1.67 49.22 16 10 H -0.25 -11.92 6.83 99.48 0.68 -11.24 16 11 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 12 H -0.27 -13.75 6.53 99.48 0.65 -13.10 16 13 N -0.69 -29.32 4.37 -446.08 -1.95 -31.27 16 14 C 0.54 20.99 2.19 87.66 0.19 21.18 16 15 O -0.59 -26.82 13.14 12.54 0.16 -26.66 16 16 C -0.05 -1.43 0.71 -53.68 -0.04 -1.47 16 17 C -0.14 -2.51 7.13 71.98 0.51 -2.00 16 18 C -0.16 -4.46 7.63 71.98 0.55 -3.91 16 19 C -0.01 -0.21 4.16 -19.87 -0.08 -0.29 16 20 C -0.11 -1.77 8.99 22.27 0.20 -1.57 16 21 C -0.05 -0.49 10.05 22.27 0.22 -0.27 16 22 C -0.11 -1.29 10.05 22.27 0.22 -1.07 16 23 C -0.07 -1.53 9.61 22.27 0.21 -1.31 16 24 C -0.06 -1.76 6.24 36.38 0.23 -1.53 16 25 N 0.03 1.05 3.13 -46.46 -0.15 0.91 16 26 O -0.17 -6.55 18.74 18.88 0.35 -6.20 16 27 O -0.18 -8.05 11.61 24.14 0.28 -7.77 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.03 1.32 7.85 -2.39 -0.02 1.30 16 30 H 0.06 2.21 5.64 -2.39 -0.01 2.20 16 31 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 32 H 0.04 1.92 3.21 -2.39 -0.01 1.92 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.07 16 34 H 0.40 15.52 6.62 -92.72 -0.61 14.91 16 35 H 0.10 1.15 7.75 -2.39 -0.02 1.13 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.28 7.29 -2.39 -0.02 1.26 16 38 H 0.04 1.49 4.07 -7.71 -0.03 1.46 16 39 H 0.08 2.10 6.38 -2.39 -0.02 2.09 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.18 1.67 5.93 -2.91 -0.02 1.65 16 42 H 0.19 0.09 8.06 -2.91 -0.02 0.06 16 43 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 44 H 0.15 2.93 7.86 -2.91 -0.02 2.91 16 Total: -1.00 -82.84 341.00 4.78 -78.06 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.33 Total: 20.17 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 3.77 Total: -17.83 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -1.79 Total: -88.99 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: 0.80 Total: -40.63 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.67 Total: 49.22 kcal Total: -82.84 4.78 -78.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346722690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.776 kcal (2) G-P(sol) polarization free energy of solvation -82.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds