Wall clock time and date at job start Tue Mar 31 2020 12:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47395 * 2 1 4 4 N 1.46502 * 109.47477 * 179.97438 * 3 2 1 5 5 C 1.36793 * 120.00549 * 277.90863 * 4 3 2 6 6 H 1.07994 * 120.00120 * 173.08479 * 5 4 3 7 7 C 1.39105 * 119.99537 * 353.08649 * 5 4 3 8 8 N 1.31319 * 120.00125 * 27.92636 * 7 5 4 9 9 Si 1.86799 * 119.99584 * 207.92364 * 7 5 4 10 10 H 1.48500 * 109.47177 * 94.99113 * 9 7 5 11 11 H 1.48505 * 109.47004 * 214.99255 * 9 7 5 12 12 H 1.48497 * 109.47392 * 334.99013 * 9 7 5 13 13 C 1.34782 * 119.99468 * 97.90636 * 4 3 2 14 14 O 1.21557 * 119.99779 * 185.61878 * 13 4 3 15 15 C 1.48005 * 120.00095 * 5.62257 * 13 4 3 16 16 C 1.40055 * 120.89957 * 332.21054 * 15 13 4 17 17 C 1.37936 * 119.12798 * 179.97438 * 16 15 13 18 18 N 1.31939 * 120.97981 * 359.75258 * 17 16 15 19 19 C 1.32189 * 121.98992 * 0.51913 * 18 17 16 20 20 O 1.35687 * 119.61990 * 179.75206 * 19 18 17 21 21 C 1.42904 * 116.99625 * 359.73045 * 20 19 18 22 22 H 1.08990 * 110.45872 * 328.84388 * 21 20 19 23 23 C 1.54510 * 110.62466 * 206.15835 * 21 20 19 24 24 C 1.54478 * 104.06563 * 241.30079 * 23 21 20 25 25 O 1.44691 * 104.84104 * 23.98094 * 24 23 21 26 26 C 1.44434 * 105.13442 * 319.52075 * 25 24 23 27 27 C 1.38851 * 120.76132 * 359.48139 * 19 18 17 28 28 H 1.08998 * 109.47216 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47449 * 300.00471 * 1 2 3 30 30 H 1.09004 * 109.47041 * 60.00525 * 1 2 3 31 31 H 1.08997 * 109.47449 * 239.99529 * 2 1 3 32 32 H 1.09003 * 109.47080 * 120.00024 * 2 1 3 33 33 H 1.09010 * 109.46990 * 60.00021 * 3 2 1 34 34 H 1.08995 * 109.47166 * 299.99728 * 3 2 1 35 35 H 0.97006 * 119.99965 * 179.97438 * 8 7 5 36 36 H 1.08000 * 120.43770 * 359.96347 * 16 15 13 37 37 H 1.08005 * 119.50855 * 180.02562 * 17 16 15 38 38 H 1.08996 * 110.51098 * 359.94491 * 23 21 20 39 39 H 1.09001 * 110.51059 * 122.65181 * 23 21 20 40 40 H 1.08991 * 110.37422 * 142.81438 * 24 23 21 41 41 H 1.09004 * 110.36887 * 265.03789 * 24 23 21 42 42 H 1.08999 * 110.37163 * 281.60240 * 26 25 24 43 43 H 1.09000 * 110.36978 * 159.38381 * 26 25 24 44 44 H 1.08000 * 120.52845 * 180.23364 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1886 1.2796 1.1743 6 1 5.2627 1.1677 1.1625 7 6 3.5002 1.2583 2.3828 8 7 2.2529 0.8493 2.4209 9 14 4.3501 1.8114 3.9516 10 1 4.0386 3.2410 4.2057 11 1 3.8690 0.9898 5.0913 12 1 5.8182 1.6431 3.8051 13 6 4.1793 1.6028 -1.1553 14 8 5.3905 1.5011 -1.1716 15 6 3.4451 1.9029 -2.4049 16 6 2.1221 1.4785 -2.5813 17 6 1.4722 1.7788 -3.7603 18 7 2.0769 2.4603 -4.7146 19 6 3.3258 2.8765 -4.5942 20 8 3.9023 3.5697 -5.6082 21 6 3.1037 3.8047 -6.7697 22 1 2.3986 2.9871 -6.9190 23 6 3.9972 3.9838 -8.0175 24 6 3.6822 5.4163 -8.5023 25 8 3.1970 6.1070 -7.3272 26 6 2.3545 5.1502 -6.6483 27 6 4.0526 2.6172 -3.4399 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6768 1.9562 -0.8900 35 1 1.7729 0.8340 3.2638 36 1 1.6173 0.9234 -1.8044 37 1 0.4517 1.4549 -3.9027 38 1 5.0499 3.8942 -7.7494 39 1 3.7338 3.2546 -8.7837 40 1 4.5852 5.8967 -8.8786 41 1 2.9143 5.3948 -9.2757 42 1 1.3816 5.0882 -7.1358 43 1 2.2361 5.4254 -5.6003 44 1 5.0715 2.9623 -3.3441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347654170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:32 Heat of formation + Delta-G solvation = -32.208767 kcal Electronic energy + Delta-G solvation = -27367.929753 eV Core-core repulsion = 23481.042872 eV Total energy + Delta-G solvation = -3886.886881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.70151 -39.66790 -38.48353 -36.95252 -35.67509 -33.02266 -31.95979 -31.78091 -31.43640 -29.93937 -28.78597 -26.21448 -25.31621 -23.73249 -23.30332 -22.63811 -21.38816 -20.80635 -19.78908 -18.07873 -17.23240 -17.00891 -16.58854 -16.24881 -15.94997 -15.32879 -15.09029 -14.92748 -14.63107 -14.26578 -13.99548 -13.79438 -13.63064 -13.35237 -13.08100 -12.84575 -12.48620 -12.25645 -12.24267 -11.95225 -11.78305 -11.72964 -11.32029 -11.14731 -11.08897 -10.98290 -10.64538 -10.48519 -10.43706 -10.24436 -9.99173 -9.87106 -9.44436 -9.29318 -8.92162 -8.50955 -8.21371 -7.94415 -6.59613 -3.90392 1.27927 1.48907 3.01551 3.05557 3.17079 3.22510 3.67042 3.76257 3.95183 4.25736 4.35194 4.46047 4.61434 4.63693 4.81821 4.88431 4.89671 5.17103 5.20554 5.33845 5.40723 5.42051 5.49545 5.54121 5.59461 5.73346 5.76664 5.85846 5.89244 6.05461 6.10950 6.18554 6.28011 6.48018 6.49813 6.62830 6.67348 6.72551 6.80828 7.16294 7.33719 7.45313 7.61750 7.90083 8.07971 8.31193 8.97851 9.20007 9.81208 10.34129 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021167 B = 0.003117 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.471976 B = 8981.758374 C = 9689.698791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.086 3.914 4 N -0.412 5.412 5 C -0.304 4.304 6 H 0.112 0.888 7 C 0.037 3.963 8 N -0.843 5.843 9 Si 0.921 3.079 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.454 3.546 14 O -0.590 6.590 15 C -0.013 4.013 16 C -0.221 4.221 17 C 0.125 3.875 18 N -0.548 5.548 19 C 0.306 3.694 20 O -0.293 6.293 21 C 0.061 3.939 22 H 0.103 0.897 23 C -0.155 4.155 24 C 0.045 3.955 25 O -0.372 6.372 26 C 0.033 3.967 27 C -0.150 4.150 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.271 0.729 36 H 0.178 0.822 37 H 0.157 0.843 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.432 3.101 -14.023 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C -0.037 4.037 4 N -0.127 5.127 5 C -0.432 4.432 6 H 0.130 0.870 7 C -0.168 4.168 8 N -0.480 5.480 9 Si 0.747 3.253 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.245 3.755 14 O -0.477 6.477 15 C -0.024 4.024 16 C -0.242 4.242 17 C -0.030 4.030 18 N -0.273 5.273 19 C 0.128 3.872 20 O -0.201 6.201 21 C 0.003 3.997 22 H 0.121 0.879 23 C -0.193 4.193 24 C -0.032 4.032 25 O -0.290 6.290 26 C -0.044 4.044 27 C -0.172 4.172 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.194 0.806 37 H 0.174 0.826 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.132 3.538 -14.551 16.182 hybrid contribution 0.324 -0.268 1.388 1.450 sum -5.808 3.270 -13.163 14.755 Atomic orbital electron populations 1.21634 0.96885 1.00390 1.00825 1.21927 0.94262 0.97754 1.02622 1.22577 0.80559 0.97770 1.02759 1.43764 1.05760 1.57206 1.05958 1.19862 0.94070 1.47436 0.81812 0.87043 1.25342 0.95937 0.95829 0.99732 1.70165 1.11246 1.39039 1.27570 0.85991 0.80226 0.79009 0.80106 1.20128 1.20886 1.19053 1.17516 0.87202 0.88135 0.82685 1.90615 1.13402 1.58569 1.85069 1.20479 0.93391 0.93645 0.94925 1.23494 0.95652 1.04702 1.00331 1.22246 0.99235 0.93294 0.88177 1.66994 1.09878 1.16638 1.33748 1.19557 0.88741 0.91215 0.87639 1.86353 1.40173 1.69140 1.24470 1.23627 0.93381 0.98748 0.83923 0.87876 1.23107 1.02306 0.98055 0.95789 1.23464 0.99595 0.91282 0.88823 1.89228 1.65826 1.36370 1.37615 1.23871 0.93483 0.87833 0.99252 1.21013 1.02048 1.02889 0.91287 0.93773 0.92352 0.94330 0.94671 0.87302 0.87824 0.91527 0.91771 0.80576 0.82565 0.88976 0.89202 0.88736 0.92003 0.90977 0.88489 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.82 37.16 0.36 -1.76 16 2 C -0.13 -2.43 4.64 -26.74 -0.12 -2.56 16 3 C 0.09 1.79 4.15 -4.04 -0.02 1.77 16 4 N -0.41 -10.13 2.64 -115.84 -0.31 -10.44 16 5 C -0.30 -7.99 9.38 -15.02 -0.14 -8.13 16 6 H 0.11 3.14 7.31 -52.49 -0.38 2.75 16 7 C 0.04 0.90 5.09 -17.45 -0.09 0.81 16 8 N -0.84 -19.42 8.00 55.50 0.44 -18.97 16 9 Si 0.92 19.25 29.64 -169.99 -5.04 14.22 16 10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 C 0.45 11.31 7.47 -12.25 -0.09 11.22 16 14 O -0.59 -16.67 16.34 5.32 0.09 -16.58 16 15 C -0.01 -0.27 5.63 -104.68 -0.59 -0.86 16 16 C -0.22 -3.83 7.58 -39.01 -0.30 -4.12 16 17 C 0.12 1.85 11.16 -17.62 -0.20 1.66 16 18 N -0.55 -8.64 8.66 -13.39 -0.12 -8.75 16 19 C 0.31 5.29 7.48 -17.17 -0.13 5.16 16 20 O -0.29 -4.66 9.76 -18.76 -0.18 -4.84 16 21 C 0.06 0.74 3.32 -25.16 -0.08 0.66 16 22 H 0.10 1.23 7.09 -51.93 -0.37 0.86 16 23 C -0.15 -1.47 6.90 -25.16 -0.17 -1.64 16 24 C 0.05 0.41 7.63 37.93 0.29 0.70 16 25 O -0.37 -4.77 11.67 -35.23 -0.41 -5.19 16 26 C 0.03 0.39 7.37 37.93 0.28 0.67 16 27 C -0.15 -2.93 9.63 -38.82 -0.37 -3.30 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.50 7.78 -51.93 -0.40 0.10 16 31 H 0.03 0.66 7.09 -51.93 -0.37 0.29 16 32 H 0.11 2.42 6.15 -51.93 -0.32 2.10 16 33 H 0.10 2.32 5.89 -51.92 -0.31 2.01 16 34 H 0.07 1.26 4.02 -51.98 -0.21 1.05 16 35 H 0.27 5.92 8.31 -40.82 -0.34 5.58 16 36 H 0.18 2.97 2.12 -52.49 -0.11 2.86 16 37 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.09 0.93 8.00 -51.93 -0.42 0.52 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.10 1.29 8.09 -51.93 -0.42 0.87 16 44 H 0.14 2.87 7.96 -52.49 -0.42 2.45 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -29.40 352.00 -7.40 -36.81 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.82 Total: 8.17 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.37 Total: 0.27 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.02 Total: -38.16 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.51 Total: -26.60 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.04 Total: 14.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.40 -7.40 -36.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347654170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.598 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds